Basic Information

Insect: Agriphila geniculea
Gene Symbol: -
Assembly: GCA_943789515.1
Location: CALSUL010000597.1:268303-274868[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.3e-07 6.7e-05 24.9 0.6 1 23 176 198 176 198 0.98

2 14 0.00089 0.18 14.1 3.0 1 23 204 227 204 227 0.91

3 14 4.5e-06 0.00091 21.3 0.5 1 23 233 255 233 255 0.98

4 14 1.6e-05 0.0033 19.6 3.0 1 23 261 283 261 283 0.99

5 14 5.3e-05 0.011 17.9 2.8 1 23 289 311 289 311 0.98

6 14 2.3e-07 4.6e-05 25.4 0.7 1 23 317 340 317 340 0.94

7 14 5.7e-06 0.0011 21.0 1.1 1 23 346 368 346 368 0.98

8 14 1.3e-05 0.0026 19.9 0.8 1 23 374 396 374 396 0.98

9 14 0.0013 0.26 13.6 1.9 1 23 402 424 402 424 0.99

10 14 1.3e-07 2.5e-05 26.2 0.7 1 23 430 452 430 452 0.98

11 14 5.4e-07 0.00011 24.2 2.9 1 23 458 480 458 480 0.98

12 14 0.062 13 8.3 3.0 1 23 486 505 486 505 0.95

13 14 9e-07 0.00018 23.5 2.0 1 23 511 533 511 533 0.98

14 14 6e-05 0.012 17.8 2.1 1 23 539 561 539 561 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.3e-07	6.7e-05	24.9	0.6	1	23	176	198	176	198	0.98
2	14	0.00089	0.18	14.1	3.0	1	23	204	227	204	227	0.91
3	14	4.5e-06	0.00091	21.3	0.5	1	23	233	255	233	255	0.98
4	14	1.6e-05	0.0033	19.6	3.0	1	23	261	283	261	283	0.99
5	14	5.3e-05	0.011	17.9	2.8	1	23	289	311	289	311	0.98
6	14	2.3e-07	4.6e-05	25.4	0.7	1	23	317	340	317	340	0.94
7	14	5.7e-06	0.0011	21.0	1.1	1	23	346	368	346	368	0.98
8	14	1.3e-05	0.0026	19.9	0.8	1	23	374	396	374	396	0.98
9	14	0.0013	0.26	13.6	1.9	1	23	402	424	402	424	0.99
10	14	1.3e-07	2.5e-05	26.2	0.7	1	23	430	452	430	452	0.98
11	14	5.4e-07	0.00011	24.2	2.9	1	23	458	480	458	480	0.98
12	14	0.062	13	8.3	3.0	1	23	486	505	486	505	0.95
13	14	9e-07	0.00018	23.5	2.0	1	23	511	533	511	533	0.98
14	14	6e-05	0.012	17.8	2.1	1	23	539	561	539	561	0.97

Sequence Information

Coding Sequence: atgtCGAACTCATCTATCGCTGGATTGTGCCGCTGTTGCCACGGTCAAGGCGCGTTCAAGAACCTCGGCGTTACGTATAATTTTAATGGAGTTGATGAGGTTTATTCCGCTATGCTTCGTGATACATTCGATGTCAACATAAATACTGAAACTACATCATCTTACAATATTTGTGAAGTATGTGAGAGCCGGCTTAGAGATGCTACCCTTTTTAAACGCCAAGTGGTGACATGTGAACAGAAATTGATACAGCTTTATAATGACAATGGTTTTAAAGatgcAAATGAAGAAACTGCTTTTATGGAAGaggaaaaagaaattaaatatgaTGAAGATGAGAAAATGCCTTCAATGGAAATATTCATCCAGCCAGTGATGGATTTAGAGGATCAGCCTCTCTCTTCTCTCCGctccaaaagaaaaaagatgGAAGATTCTGGTGGTGATGTTGACACTAATTGGGACGCTCCAGTGGATCAAAGCGATGATGAAAGCTCCAAACCCAGTAAggtgaaaacaaaaaagttttcatGCGAAGTCTGCCAAAAAAGATTTACGTACAACGGCTCTCTAGAAGTCCACATGAGAATCCACAGCGGAGAGAAAACTTATCAATGCAAGCTTTGCAACAACAAATTTGTTCACAATAAAGATTTAACGAAACACTTCGAAGAAATCCACGGAGACGGTGAAAAATACCCTTGCACGATATGCCCTAAAACATTCGAAAAGGCACGGTTCCTgaaaactcatataaaaatcCATTTCGACGAAGAAAAATTCAAGTGCACTCAATGTGAAAAGGAGTTTCAGCGGAAAAAAGGCTTAAAAGAACATTTAAAAACGCATACGGGTGAAAAGAACTTTACTTGTGATGTTTGTAATAAGGCTTTTGGGCACAATCAGACTTTGAAGTCACATAAACTGACGCATACTGGAGAAAGACCGTATGTTTGTGATATTTGTGGCAAAAGGTTCCCACAGCGAACACATTTGAAGAGACATTTAGTGATAATTCACACCGGAGTGAAACCGTATTCTTGTAAAGTGTGTGAAAAACAGTTTTCAAGCAAAAGTTATTTAGCAATACATGAAAGACAACATACTGGGGAGCGACCGTTTTCTTGTGACGTTTGTAAAAAAGATTTTAGTGCGTACACTTCTTTAAAAGTGCATATGCGTGTCCATACCGGTTTAAAACCGTATTCGTGCAGTTTTTGTAGTAGACAGTTCGCTCAAATGGGTAGTTTTAAACTACATGAACGGACGCATACAGGCGAACGACCGTTTTCATGTAAAGTGTGTAAAAAACCATTTTCTGACAACGGTTACTTGAAAATACATATGAGAGTACATACAGGAGAAAAACCTTATTCTTGCGAGATTTGTAATCGTTGCTTTAGGGAAACGGGGCAGTTGAAACGACATATGAGGGTGCATACTGGTGTTAAGCCGTATACATGTAAAATTTGCAATAAACAAATAGGTAATTTGTCTAAACATATGCGAGTACATTCGGATGTAAGACCGTTCATGTGTCATATTTGTAATAAACAGTTTTCTATTAACGGTAATTTGAAGTTGCACATGAGAGTTCATTCTGGTGAGAAACCGTACGCTTGTGATATTTGTAATGGTCAGTTTACGCAAAGCAGTGGTTTAAAAAGACATAGGTGTTCTCATGCTGGGAAAAGTGATAGTTga
Protein Sequence: MSNSSIAGLCRCCHGQGAFKNLGVTYNFNGVDEVYSAMLRDTFDVNINTETTSSYNICEVCESRLRDATLFKRQVVTCEQKLIQLYNDNGFKDANEETAFMEEEKEIKYDEDEKMPSMEIFIQPVMDLEDQPLSSLRSKRKKMEDSGGDVDTNWDAPVDQSDDESSKPSKVKTKKFSCEVCQKRFTYNGSLEVHMRIHSGEKTYQCKLCNNKFVHNKDLTKHFEEIHGDGEKYPCTICPKTFEKARFLKTHIKIHFDEEKFKCTQCEKEFQRKKGLKEHLKTHTGEKNFTCDVCNKAFGHNQTLKSHKLTHTGERPYVCDICGKRFPQRTHLKRHLVIIHTGVKPYSCKVCEKQFSSKSYLAIHERQHTGERPFSCDVCKKDFSAYTSLKVHMRVHTGLKPYSCSFCSRQFAQMGSFKLHERTHTGERPFSCKVCKKPFSDNGYLKIHMRVHTGEKPYSCEICNRCFRETGQLKRHMRVHTGVKPYTCKICNKQIGNLSKHMRVHSDVRPFMCHICNKQFSINGNLKLHMRVHSGEKPYACDICNGQFTQSSGLKRHRCSHAGKSDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00382919;
90% Identity: iTF_00035930;
80% Identity: -