Agen007657.1
Basic Information
- Insect
- Agriphila geniculea
- Gene Symbol
- -
- Assembly
- GCA_943789515.1
- Location
- CALSUL010000091.1:385660-386904[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-11 2.6e-08 35.2 0.1 1 43 12 54 12 55 0.92 2 2 2.7 2.5e+03 0.1 0.0 28 42 244 259 243 261 0.79
Sequence Information
- Coding Sequence
- ATGTCTCCTTCGAAGAAGGAACGGGCGCTTTGGTCTGAAGAGAATTTAAAAGCAGCTATTGtagaaatacaaacaaacaagctGACTCAACGCGCTGCTGCtgaaaaatacaatattccAAGACGAACTTTAAGGAATCACTTGAAATCAGGCATTATGTCAAAAGTATCACCAGGAAAAAAGACTATGCTCACTAAACATCAGGAAGAAGAACTTTGTCAAAGAATCAATAAATTTGTTGAAATAGGTTTACCTATTACTTCAGTGTTTATAAGAAAGCAGGCTTTTAAATTCTGCTTGAGGTATGGTATCCGGAACAAATTTGACCACCAAAAGAGAATGGCAAGTCGCTACTGGCTCACATATTTTCTTAAACGTAATCCTTCAGTTCCCAAGCCACAACACCAAATCATGATCCCCACCATGGACCAAAAATTAAACAAGTCGATAGTCCTACATTATTTTCGAGAGGTCCAGAGACTTTATGGTGTATTAGATATACTAGATCACCCAGAACGTCTGTACAATATGGATGAAAAAGTATGCAGGATTTCTGTTCAAACTCAGAACACTGTTTTAGTCACAAAGGGAAGcaaaaaagtttgtttaacTGCATCCAAGCACACAGAAAATGTAACAATAGCAAAGTGTGTGAATGCATCAGGAACCACCATCCCGCCTATGATAATTTTTAAGGGTCACCGCCACAATCCTGAACCTGCAGAAAATTTGCCAGCTGGAACACTTGTCAGAATGGCTAAAACAGGAAGCATGACTCTTGATTTGTTTATGGAGTTCATCCAACACATAGGTAGACATAAGGTACCTGGTAAATGTTTGTTCATTTTTGATGGTATTAAATCCTACATGACATATGAAGTTATACAAGAAGCAGAAAAATATGACATTGTTCTTTACTGTCTACCATATAATGCCACCCATGAACTTCAGCCCTTGGACAAGACGATTAACAAATCCTTCAAGCATTACTGGGACGAAGAAGTTTTGCGGGTTTTGAACAACAAACCGGACACAACATTAACATATGCCACCTTTAACAAATTGTTCAGTAATATTTGGCCTAAGTGTATGACACATACAAATATTGTCAACGGATTCAAGGCAACGGGATTGTTCCCTTTTAATCCAGAAGCTATTCCAGATGAGGCTTATAGAGCTAGTTGTTCTGGTTTACAAAATCCTATTATAAATATTGATTCTTCTGACTCAGATACTTCCAATTGA
- Protein Sequence
- MSPSKKERALWSEENLKAAIVEIQTNKLTQRAAAEKYNIPRRTLRNHLKSGIMSKVSPGKKTMLTKHQEEELCQRINKFVEIGLPITSVFIRKQAFKFCLRYGIRNKFDHQKRMASRYWLTYFLKRNPSVPKPQHQIMIPTMDQKLNKSIVLHYFREVQRLYGVLDILDHPERLYNMDEKVCRISVQTQNTVLVTKGSKKVCLTASKHTENVTIAKCVNASGTTIPPMIIFKGHRHNPEPAENLPAGTLVRMAKTGSMTLDLFMEFIQHIGRHKVPGKCLFIFDGIKSYMTYEVIQEAEKYDIVLYCLPYNATHELQPLDKTINKSFKHYWDEEVLRVLNNKPDTTLTYATFNKLFSNIWPKCMTHTNIVNGFKATGLFPFNPEAIPDEAYRASCSGLQNPIINIDSSDSDTSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -