Amar002693.1
Basic Information
- Insect
- Agriopis marginaria
- Gene Symbol
- -
- Assembly
- GCA_932301435.1
- Location
- CAKOAR010000022.1:5408521-5426012[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2 1.2e+02 3.8 4.6 5 23 285 303 282 303 0.94 2 11 0.087 5.1 8.1 4.4 1 23 311 334 311 334 0.92 3 11 2.8 1.7e+02 3.3 0.2 1 23 338 360 338 360 0.88 4 11 0.0067 0.4 11.6 2.2 1 23 443 465 443 465 0.98 5 11 0.12 7 7.7 6.5 1 23 473 496 473 496 0.97 6 11 0.49 29 5.7 1.2 1 23 500 522 500 522 0.97 7 11 0.0088 0.52 11.2 3.7 1 23 527 550 527 550 0.95 8 11 0.00023 0.014 16.2 0.6 3 23 556 577 554 577 0.94 9 11 1.1e-05 0.00065 20.4 1.3 1 23 710 732 710 732 0.98 10 11 0.00045 0.027 15.3 1.2 1 23 738 760 738 760 0.96 11 11 9.9e-05 0.0059 17.3 2.8 1 23 766 789 766 789 0.98
Sequence Information
- Coding Sequence
- ATGTGGGATTTAAAAGCGTGCACTGTGTGCTTCAGCACAGATGTAAAACTTAATAGCTTAAACGATGGAACACTGCGAAATGATTTCAACTTGGTTTCCGGGCTTAAGATAGTGCAAGGGAACGGAATGCCGGAGTACTTGTGTGTGGAATGCACAGCTTTTGTTGAAAAGTTTAAAATGTTTCGGAGCAAATGCCATAGAGCACACTATGCATTGGAACAAATACTCACTAAGAATAAAGAGATTAAGAAGTGCAATTTAAAACAGTTCAACCGCAGACGAGTTCAGATCATGCCCACACTATCTTACATGAGTATGGACAGAAGTAATTATTCCCAATTCCAGTTTGAACTGGTTGATGATTGCCGTAATGGTAATTCACAAGTTGGCCACATCCCTGTAGCACATTGCACCACGCTGACACCCGAAGAGACTTTCGAATTGGAAATGAAAGACGTTTCACAACAAGAAATAGAAAAGTGCATTAAGATTGAAATTGAACAATCGGGACATGAAATTACCATTGAACATACACCACTAAAAGGAAACCAAACACTTAATCAAAATTACATTACAAATACAACGGAAAGTACAACAAATTCCACAAATGATAAAACAACTTTAAAATCATTGATGTTTGAAATAGATCAAAATGACGATTTCCATGCTGATAATGCCAATGAAACCGATGTTGAAGATGAGAAATTTGAGCCAGTTTCTTGTAAATTGAATAATGAAGCAGTGGGAGTAAGATATAGCGATAAGTGTGGGGATGTGGTGCCGATGACCGTGAAGGAAGCCAAAGCGGCTGTGGAAGTATACAAGTACACCTCGGTTGGTCCTTACCGATGTCACTGCGGTAAAGCATTTGTGCTAGAGAAAAATTACACAACACATTGTCGGAGGCATGATTTGCACATAAGCGGCACATATCACTGTGAGATCTGTGATTACTACTTCAAGACCGCATTCCTGCTTCAATGTCACATGTCTGACCAGCACATGTACAAATATCTATGTACCATGTGCCCTACAGTCTCTTTCACCAAGCCATCAGCAAAACAGCACTATGTGGCTCACGCTAAGCCGGATCGAGAAGTTAGTCCCACGCGGAAAAAGAGGGAAAAAGTCCCCGTCAAGAAACCGTCCTGGATTACACCCACCACTCGAGGCGGCGCACGGATTAAGGGTATTTGCAAAGTAAAGCCGAAGAGGGTGATGAAAAAGCAGCCCAAAGACTTTCCGCTCTACTCCCCTCAAACCCAATTGGAGCAATATGAGATGGTGCAACGGAGGAAGGAGTCTAGGAACTATTTAGAGGCCAAATTCAAGTGTGAATTGTGCTACAGAGGGTATAGGCTCACTAGCACTTATAATAAACACATGGCGAAACATGACTCGACGATATCCGGCGCCCACCAGTGCGACATGTGCAAACATTACTTCCGCGACACGCGCCGCCTCTACAAACATATGATCATGTACCATTTGTTTAAATACTCCTGCCAGCTCTGCGAGTTTTTTACCACTAACAAAGGTCAAGCGATATATCACTACAAATGGCATAAGAATGTTACATACGACTGTCCACACTGTGATAAAAAGTTTAATAAAATCACGACGCAAATGACGCACATAAGGTTCAAGCACCCTGGCACCGACATCTGCAACGTATGTGGGCACAGCTTCATCAGTTCCAGCGGACTTAAATATCACAAGCTTGTGTCTCATAGTAAACTGGAGATAGATATAAGCGAAGCGATGGTGGTGAACCCGGACACCACGAGCCCGTACCACTGCGCGGAGTGTCGAATGCAGTTCTTGTCGGAACAGGCCTTCGTCACACATCTAGGGAGCTCCAAGAAACACGTCGAAATTAACGTCTCCTCGCAATCAGTGATGAAGTGCAAATCGAGGGCGTCACGGGCGGAGCCCGGGTCTGACGCCGGGCTGGGCACCGGGACCGGGCCGGGGGGACGCCGGCGGCGCGCGGCCGACTCTCAAGTCCTCAACACCGGCGTCACCACGTCCACACACTGCAATGTCTGCGGGTTGTTCCTAGGCAGCGACGTGATGGCTCGGCGGCACTACGAGGCGGAGCACCCCGGGACCGACTACCTGAAGCGGTACATGTGCGACGTATGCGGACACACCACTAAGCAATTCGCGAACCTGCTAGTCCACATGCGCACGCACACGCGCGAGAAGCCGTACCCGTGTCCGCACTGCGACCGCCGGTTCAGCATGACCAGCAACAGAGACCGCCATCTTGTCGTGCATACTGGAGAAAAACGCTTCCAATGCCAGCACTGTAGCCGGCGGTTCACTCAAAGCACCGCTGTCAAGCTTCACATACAGACCGTCCACATGAAGATTCCGTACAAACCCTGGGACAAGAAGAACAGGAAACGACGCAAGGAGGCCCAACAGATCACATCAGGAACGGAGGTGGTTGATACGCCGGTGACCGAGGTGGTGGCTCCCGTGCCACAACACAAGCTGCTGATCGAACCTCAAGGAGAATTTATCACGTACATCTACACACATGAACAGTGA
- Protein Sequence
- MWDLKACTVCFSTDVKLNSLNDGTLRNDFNLVSGLKIVQGNGMPEYLCVECTAFVEKFKMFRSKCHRAHYALEQILTKNKEIKKCNLKQFNRRRVQIMPTLSYMSMDRSNYSQFQFELVDDCRNGNSQVGHIPVAHCTTLTPEETFELEMKDVSQQEIEKCIKIEIEQSGHEITIEHTPLKGNQTLNQNYITNTTESTTNSTNDKTTLKSLMFEIDQNDDFHADNANETDVEDEKFEPVSCKLNNEAVGVRYSDKCGDVVPMTVKEAKAAVEVYKYTSVGPYRCHCGKAFVLEKNYTTHCRRHDLHISGTYHCEICDYYFKTAFLLQCHMSDQHMYKYLCTMCPTVSFTKPSAKQHYVAHAKPDREVSPTRKKREKVPVKKPSWITPTTRGGARIKGICKVKPKRVMKKQPKDFPLYSPQTQLEQYEMVQRRKESRNYLEAKFKCELCYRGYRLTSTYNKHMAKHDSTISGAHQCDMCKHYFRDTRRLYKHMIMYHLFKYSCQLCEFFTTNKGQAIYHYKWHKNVTYDCPHCDKKFNKITTQMTHIRFKHPGTDICNVCGHSFISSSGLKYHKLVSHSKLEIDISEAMVVNPDTTSPYHCAECRMQFLSEQAFVTHLGSSKKHVEINVSSQSVMKCKSRASRAEPGSDAGLGTGTGPGGRRRRAADSQVLNTGVTTSTHCNVCGLFLGSDVMARRHYEAEHPGTDYLKRYMCDVCGHTTKQFANLLVHMRTHTREKPYPCPHCDRRFSMTSNRDRHLVVHTGEKRFQCQHCSRRFTQSTAVKLHIQTVHMKIPYKPWDKKNRKRRKEAQQITSGTEVVDTPVTEVVAPVPQHKLLIEPQGEFITYIYTHEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00033332;
- 90% Identity
- iTF_00033332;
- 80% Identity
- -