Basic Information

Insect: Agriopis marginaria
Gene Symbol: -
Assembly: GCA_932301435.1
Location: CAKOAR010000002.1:4310858-4326401[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0023 0.14 13.0 3.3 1 23 347 370 347 370 0.95

2 10 0.03 1.8 9.5 8.2 2 23 378 399 377 399 0.96

3 10 2 1.2e+02 3.8 0.1 1 12 403 414 403 421 0.88

4 10 0.00025 0.015 16.1 5.7 2 23 431 453 431 453 0.98

5 10 0.0012 0.072 13.9 0.1 1 23 457 480 457 480 0.95

6 10 0.1 6.1 7.8 0.3 2 20 498 516 497 518 0.91

7 10 0.026 1.5 9.7 6.3 2 23 557 579 556 579 0.91

8 10 3.5 2e+02 3.1 1.9 1 21 591 614 591 616 0.56

9 10 0.041 2.4 9.1 3.2 1 23 618 640 618 640 0.97

10 10 9.6e-06 0.00057 20.5 1.7 1 23 646 669 646 669 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0023	0.14	13.0	3.3	1	23	347	370	347	370	0.95
2	10	0.03	1.8	9.5	8.2	2	23	378	399	377	399	0.96
3	10	2	1.2e+02	3.8	0.1	1	12	403	414	403	421	0.88
4	10	0.00025	0.015	16.1	5.7	2	23	431	453	431	453	0.98
5	10	0.0012	0.072	13.9	0.1	1	23	457	480	457	480	0.95
6	10	0.1	6.1	7.8	0.3	2	20	498	516	497	518	0.91
7	10	0.026	1.5	9.7	6.3	2	23	557	579	556	579	0.91
8	10	3.5	2e+02	3.1	1.9	1	21	591	614	591	616	0.56
9	10	0.041	2.4	9.1	3.2	1	23	618	640	618	640	0.97
10	10	9.6e-06	0.00057	20.5	1.7	1	23	646	669	646	669	0.98

Sequence Information

Coding Sequence: ATGTGCGACTTATACATTTGTCGAATATGTCTCATTATCGCCGTGAGAGGGTACAAACTAGAGAAGCACAGCCTGGGTAGTTACTATGAATATGTAACACGACAAAAACTGAACACTAGAGACGGGCTGCCGCAGTGGGTCTGCTATGAATGTGCGATGATTCTGCATAAGTACCACAAGTTTAAGGAGAAGTGCTTAAAAGCACAGCAAGTGTTGAGACAGCAGATTTCATGGAGAGGACATATTAGTTATGAATCAGTTGCCCTATTAAACAGATACAGCGAAAACTTAATATCCTCTGTTGGCATTGCTGTACAGAATAAACGAGTTAAGACGACCATTGTAAAACATAAATACAAGAATAAACGCAAACTAATTGAAGTAGAAAAGGTCATGTTGAACTTTGACAGCGAAGACTCGATGAAACCTGAAGATCTTGAAGTGAAAGAAATTAAAAACATATTCGATAACAGTATAACCGTTGCCGATGAGAATGTTGATGAAAAAATATCTATCGATGTAGAACAAGTGGAAATAAAAACTGAAACAAATGTTGTAGAACCACTTAAAGCTGAAGCATCAAAACAAGACAATGAAATAGCTGAGCCTCCAAGCAACACATTTGATAGCATAGACAATACTGAAGTGAGCAATACAAAAATTGACATCGCAAAGACAAATACTGACATTATAAATGACTTAGATGTCAATGATGACATGGGCAACACAGATCATGTTGACAACGCCATGTCAAGCGACGATGAAAACATATTCCTAGATATAGTAAAAAAAGCTGTGAAAGGCGAGAGTAAATTAGTATTTCTAGATAACATAGCAATGGAACCACTCAAAAAGAAGAAAAAATACACAAAGAAGACAGAAAAGTCTAAAGGCTCTAAAGGCAAAGTACATAAGTTTGAAAAACCTAAAAAAGAGTATTTAGGTCCGGAGCATTGGAGAAAGTTTAATTTAAGTGAAGAGGAAGCAATGCATGAGTTCAAACAGAGAGAGAATAGTGACCAATATGTGAACGCTAACTATAAGTGTCACAATTGCTTGAAAGGTTTCTCCAAAGTTGACATGTTGATGAGACATGTCAAATTTAGACACGAAGAGTCTTGCGGTCCGATCGAATGCCGCTTCTGTCACATGCGTTTCAAACAGAAGAACAAGCTGTGTAAGCATTTGAAGCAACATTATGCTGTGTATCAGTGCTTAAGGTGCGACATGCGGTTTAGACTTGAGAGTTCTGCAATATTCCACGAAGACTATCATAATGGGGTGACGAGAAAGTGCAAACATTGCGGCGAGGAGTTCAAACACTCGTCTACGTACTACACACACTTGCGTATGTCGCACCGCAGCGCGCATGTGTGCGTGGCATGCGGCGCATCCTTCGTCTCGGCCGCGGGGCTGCAGCAACATCGCAGGATCAAACATTACGATAACGGCGACGAAGTGCCAAACGAACCAGCGGCGGCGACAAACACCTACTGCTCGAAATGTGACATTCGGTTCGAGACGCAAGCCGCGTACGACGAGCATCTCACCCACTCCAACATGCACGGGGACCTCAACACGGATTCTGAAATCGCGCGCGTCAACTTGAAAGGCAACAAGAAAATATCACCACAAAGCTATAAAGGGATCCGGAAGAAGAAACCCACCACTTGCCAGTATTGCGGGAAACACTTCACGACGCAGGGGCAGTGTATGAAGCACCACCTGGCGGAGCACCCGCGGCGGTCCTTCTACCCGCCAGACAAGCGGCACATCTGCGAGGTCTGCGGACAGTCGCTAGCTGCGGTGAGCATCGCGTCCCACATGAACCGGCACACGCGCGAGCACGTGTACCCGTGCGCCACCTGCGGCATGCAGTTCATATCCAAGAGTAGCCACCACCGGCACCAAGTCACGCACACAGGCGAGAGGCCGTATCCGTGTCCGCTGTGCGAGAAGCGATTCACACAGAAGAACAGCATGCAACTACACTATCGGACCTTCCATCTCAAACAACCTTACCCTAAAAGGAATAGAAGAAAGAAGACAGACGTTGAGATGCCTATAATGGAGTGTGCCATAAACAGAGATAGAATGCAGATGTTGGAGTGCATCAGAGACCGCAGCGATATTGACAGTAACGACACGCCGCCCGTCACCAGGTGGCGCGCCACGTTTTAA
Protein Sequence: MCDLYICRICLIIAVRGYKLEKHSLGSYYEYVTRQKLNTRDGLPQWVCYECAMILHKYHKFKEKCLKAQQVLRQQISWRGHISYESVALLNRYSENLISSVGIAVQNKRVKTTIVKHKYKNKRKLIEVEKVMLNFDSEDSMKPEDLEVKEIKNIFDNSITVADENVDEKISIDVEQVEIKTETNVVEPLKAEASKQDNEIAEPPSNTFDSIDNTEVSNTKIDIAKTNTDIINDLDVNDDMGNTDHVDNAMSSDDENIFLDIVKKAVKGESKLVFLDNIAMEPLKKKKKYTKKTEKSKGSKGKVHKFEKPKKEYLGPEHWRKFNLSEEEAMHEFKQRENSDQYVNANYKCHNCLKGFSKVDMLMRHVKFRHEESCGPIECRFCHMRFKQKNKLCKHLKQHYAVYQCLRCDMRFRLESSAIFHEDYHNGVTRKCKHCGEEFKHSSTYYTHLRMSHRSAHVCVACGASFVSAAGLQQHRRIKHYDNGDEVPNEPAAATNTYCSKCDIRFETQAAYDEHLTHSNMHGDLNTDSEIARVNLKGNKKISPQSYKGIRKKKPTTCQYCGKHFTTQGQCMKHHLAEHPRRSFYPPDKRHICEVCGQSLAAVSIASHMNRHTREHVYPCATCGMQFISKSSHHRHQVTHTGERPYPCPLCEKRFTQKNSMQLHYRTFHLKQPYPKRNRRKKTDVEMPIMECAINRDRMQMLECIRDRSDIDSNDTPPVTRWRATF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00666892;
90% Identity: iTF_00033349;
80% Identity: -