Amar017299.1
Basic Information
- Insect
- Agriopis marginaria
- Gene Symbol
- -
- Assembly
- GCA_932301435.1
- Location
- CAKOAR010000181.1:601613-609582[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00039 0.023 15.5 0.6 1 23 299 322 299 322 0.92 2 10 0.012 0.71 10.8 1.3 3 19 335 351 333 355 0.90 3 10 3e-06 0.00018 22.1 0.9 2 23 361 382 360 382 0.97 4 10 0.00011 0.0065 17.2 0.5 1 23 386 408 386 408 0.98 5 10 0.00013 0.0079 16.9 0.5 2 23 634 655 633 655 0.96 6 10 0.11 6.4 7.8 0.3 3 23 676 697 674 697 0.95 7 10 7.5e-05 0.0044 17.7 3.1 1 23 703 725 703 725 0.97 8 10 5e-05 0.003 18.3 2.1 1 23 730 752 730 752 0.97 9 10 0.00054 0.032 15.0 5.8 2 23 759 781 758 781 0.96 10 10 0.0038 0.23 12.3 1.7 3 23 821 842 820 843 0.92
Sequence Information
- Coding Sequence
- ATGGCCCAGGAAAACATCTTCGCGGGCGTCCGAGAGGTCGTCCCAGTCATATTTATCCCGAGACAATGTACAAATCTTCAAATGAACAGCGATATGTCCGAAAACGTGTTCCTTGACCTGGCCATTACTTCACCAGACACTGAGGGTAACCAAGCTTGCATTTATTCGGGCTTTTGCAATGTAAAGGTTGTGGAATCTTGCAATATCAACATTTATCCGACTGAAACGGTTGACGTTGAACAGGAGAAATCAAATTCGTCAATAGACTGTGAGGACATAAATCACATGCCGGTTATCTTGTCTGATGCCAATACATTTCCAAATCAAGCTTATGACCAGTCTCAAGTGTGGATAGACCCTACTAGAAGCCCATATGTATACAACCACTATAACACAGCGGCACAACAGGCTTACTCCATCCTAGAAAAGACCGGATGCATCACTCTTCAGCAACACAATACCTACTTAACTCAGAATGTCTACAACTATGACCGTAAGTCTCAGAAAAATGATCTTGAGCAAAATAAGTTCAAGAAGGCACCTAAACCTCGAACCCGACAACCTACTCCGGTGATCTATGAAGACGAAGAGTCAGAGAGTGAAGTGTTCTTATCTCAACTGTCTCGCAGAAATAAGAAGAGGAATAAAGCTGCAGAGAAACGTGATACCAGCATTGAAAAGAAGAATAATGCATTGAAGCAGTTGATGTCAACGGATATCCAGTCCACATCCAAGCAGAGGAAGACAATACTGTTCCTTGGGGAGGACTCCACTTCTGGACAGACCATTCAGAATATACAGTACACGGATCCTATGGTCAAGTGCTCCGcgatagaggtggaccatgaagtagtgattgAGGACGCCCCGCCCGCATCACCCAATAAAAAAAGATACCAGTGCGACAAATGCAAGCAAATCTTCGAACAAATCTCAGATTTCCGTAACCACATGGTCGGGAACCACACTAACTACAAAGTCATTAAGAACAGAGACTTGGCGTGTTCCGAATGTGGGAAGAAATTTTCAAACTATGTCAAGTACGAAGTACACTGCTTGGGACATGGAAACCCAGATGTAGAATGCCCTAAGTGCCACAAAGTGTACGCTTCAAAAAACAACCTAAAAGTTCACTTAAAGATTCATGACCGCAAATTCCCTTGCCAATATTGTTCTAAATCGTATGCCACTGCTGAACCTTACAAAAAACATTTAAAGGTGCATTCTAAATTCGTATGCCAGTATAATGGCTGCTTCTTTTTGACAAATTCGGCGTCGCAGCGTGATGATCACTATGACGAACATATTGAAAATTATCGTATTGAGACCGATCTTAACAATAACGATAACGATCTTGATGAAGATCGTGATGACCGTAATGGACAAGGTCCTAATGGTCAAGGTAATGAGGGTCATAATGATCAAGGTGACTTTAGTCATAATGATCAAGATAATGGTGGTCATAATGTTCAAGGCAATGATGGTCATAACTATCAAGGTAACGATGGACGTGGTGATCAAGGTAATGATGGAACTGGTGAAATTGACGGAGATGATGCTATCCCGAAACAGCCAAGCAACACTGAAATTGCAGATTCTTTTATAGAAAATCTCAGTGAAGAATTTGACCAAGATCTGATGGCTACAGAATATGAACTGAAAACTGAAATGTCAGGAGAACCGGAGAGAAATGAAAATGAACTGAAGAGGAATAATAATGGGCAAGTGGAGAGAAATGGAAATAGAGAAGTAAATAATAATGATATGTCTGAAGTGGAGGGCAATTATCATAAAGACCAGAGAGCAAAAAAGGCTGATTTAGTGATGGCAAAGGTTATGTCTAGTAAAATATTCCTGGCGAATACTAAAGCGGCGAGGATTCATGCGAGAAACAATAAGACTTGCCAAGTGTGCTCGAAGACATTTGACCGCGTGGGAGACCTCAAGCGGCATCTGATTGAGCACGTCATCAAATGCGCCCTGGCTAAGACAGTTAGCAGCAAGCACGGCATTCTTAATATCAACTGCGAGATTTGCCAAACGGAAACGTTCAACACGGTCGATAAATACAAAGCGCACCTCCGCGAGCACGCCAAACTGACTCTTTACAAATGCATCTTCTGCGACAAATCGTTCAGCGATTCCAGCAACTTCTCCAAGCACAAGAAAATCCACGGCGTTTCTTACTACCAGTGCGACTTGTGCCACAGAAGGTTCAACACTAAAATAATGCTCGAAAAACATATAGACCTACACTCGAAAAATAAGCCCCTGAAATGCAAACTATGCCACCGCGTCTTCCACTTTCAGTCCATGCTGAATAAGCATATAAAAAGCATGCACAACAAACCCACTGCTTTGAAATTTTCCTGCAGATTTTGCAGTGATGGATTTAAATCTTTGAAAGATAAGTGGGATCACGAATGGGTAGTCCATAACATTAGGAAGATGATTGTCGATTGTTTGGTCTGCGGGGCCAAGTTCAGGAAATATTCCGAGTTGAAGAGACATTTCCTAAATGAACATCACATGGACATTCCAACGCAGAAGAAGCTTCTGAAAAATGTCTCTTTATCGACAGATATCTGCGTCCAAAAGGCAACTGGTTACTGA
- Protein Sequence
- MAQENIFAGVREVVPVIFIPRQCTNLQMNSDMSENVFLDLAITSPDTEGNQACIYSGFCNVKVVESCNINIYPTETVDVEQEKSNSSIDCEDINHMPVILSDANTFPNQAYDQSQVWIDPTRSPYVYNHYNTAAQQAYSILEKTGCITLQQHNTYLTQNVYNYDRKSQKNDLEQNKFKKAPKPRTRQPTPVIYEDEESESEVFLSQLSRRNKKRNKAAEKRDTSIEKKNNALKQLMSTDIQSTSKQRKTILFLGEDSTSGQTIQNIQYTDPMVKCSAIEVDHEVVIEDAPPASPNKKRYQCDKCKQIFEQISDFRNHMVGNHTNYKVIKNRDLACSECGKKFSNYVKYEVHCLGHGNPDVECPKCHKVYASKNNLKVHLKIHDRKFPCQYCSKSYATAEPYKKHLKVHSKFVCQYNGCFFLTNSASQRDDHYDEHIENYRIETDLNNNDNDLDEDRDDRNGQGPNGQGNEGHNDQGDFSHNDQDNGGHNVQGNDGHNYQGNDGRGDQGNDGTGEIDGDDAIPKQPSNTEIADSFIENLSEEFDQDLMATEYELKTEMSGEPERNENELKRNNNGQVERNGNREVNNNDMSEVEGNYHKDQRAKKADLVMAKVMSSKIFLANTKAARIHARNNKTCQVCSKTFDRVGDLKRHLIEHVIKCALAKTVSSKHGILNINCEICQTETFNTVDKYKAHLREHAKLTLYKCIFCDKSFSDSSNFSKHKKIHGVSYYQCDLCHRRFNTKIMLEKHIDLHSKNKPLKCKLCHRVFHFQSMLNKHIKSMHNKPTALKFSCRFCSDGFKSLKDKWDHEWVVHNIRKMIVDCLVCGAKFRKYSELKRHFLNEHHMDIPTQKKLLKNVSLSTDICVQKATGY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -