Basic Information

Insect: Agriopis marginaria
Gene Symbol: -
Assembly: GCA_932301435.1
Location: CAKOAR010000507.1:2007267-2020508[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 7 4.2e+02 2.1 0.1 2 23 109 130 108 130 0.93

2 19 0.00059 0.035 14.9 0.2 2 23 134 156 133 156 0.90

3 19 0.51 30 5.7 1.6 3 23 379 400 377 400 0.92

4 19 9.8 5.8e+02 1.6 0.0 3 19 410 426 408 429 0.92

5 19 0.046 2.7 9.0 0.5 2 23 439 460 438 460 0.94

6 19 0.038 2.2 9.2 1.7 1 23 508 531 508 531 0.90

7 19 1.7 1e+02 4.0 0.6 2 23 540 562 539 562 0.93

8 19 8.8 5.2e+02 1.8 3.4 2 23 570 594 569 594 0.88

9 19 0.021 1.2 10.0 0.1 3 23 606 627 604 627 0.96

10 19 0.13 7.7 7.5 0.9 1 23 632 655 632 655 0.96

11 19 0.00045 0.027 15.3 3.4 1 23 661 683 661 683 0.97

12 19 9.2e-05 0.0055 17.4 1.0 1 23 690 712 690 712 0.98

13 19 9.9e-05 0.0058 17.4 2.3 1 23 717 739 717 739 0.96

14 19 0.0015 0.091 13.6 2.3 1 23 745 767 745 767 0.97

15 19 2.3e-06 0.00014 22.5 1.2 1 23 773 795 773 795 0.97

16 19 3.2e-05 0.0019 18.9 2.5 2 23 802 823 802 823 0.98

17 19 0.0017 0.1 13.5 0.9 2 23 833 855 832 855 0.97

18 19 0.0004 0.024 15.4 0.8 1 23 860 882 860 882 0.99

19 19 0.007 0.41 11.5 2.8 1 23 888 911 888 911 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	7	4.2e+02	2.1	0.1	2	23	109	130	108	130	0.93
2	19	0.00059	0.035	14.9	0.2	2	23	134	156	133	156	0.90
3	19	0.51	30	5.7	1.6	3	23	379	400	377	400	0.92
4	19	9.8	5.8e+02	1.6	0.0	3	19	410	426	408	429	0.92
5	19	0.046	2.7	9.0	0.5	2	23	439	460	438	460	0.94
6	19	0.038	2.2	9.2	1.7	1	23	508	531	508	531	0.90
7	19	1.7	1e+02	4.0	0.6	2	23	540	562	539	562	0.93
8	19	8.8	5.2e+02	1.8	3.4	2	23	570	594	569	594	0.88
9	19	0.021	1.2	10.0	0.1	3	23	606	627	604	627	0.96
10	19	0.13	7.7	7.5	0.9	1	23	632	655	632	655	0.96
11	19	0.00045	0.027	15.3	3.4	1	23	661	683	661	683	0.97
12	19	9.2e-05	0.0055	17.4	1.0	1	23	690	712	690	712	0.98
13	19	9.9e-05	0.0058	17.4	2.3	1	23	717	739	717	739	0.96
14	19	0.0015	0.091	13.6	2.3	1	23	745	767	745	767	0.97
15	19	2.3e-06	0.00014	22.5	1.2	1	23	773	795	773	795	0.97
16	19	3.2e-05	0.0019	18.9	2.5	2	23	802	823	802	823	0.98
17	19	0.0017	0.1	13.5	0.9	2	23	833	855	832	855	0.97
18	19	0.0004	0.024	15.4	0.8	1	23	860	882	860	882	0.99
19	19	0.007	0.41	11.5	2.8	1	23	888	911	888	911	0.97

Sequence Information

Coding Sequence: ATGTCTTCAGATGATTCTGAAGATGAGCCTTTGTCCGTCTTAGCAGCTCTAAAAAAACGAGACGTATCAGGACTTGAAATACTTCCAATATTCAAAACCGAAGGCTCGTCGGCGAAACTGAATATAAAAAAGGAATGCGATGTGTCGATAACACTTCAAAGGATTCAAAATGAACTGCTGCCGGTTGTTGAAAGGCCGACAGATGTGTGGTTGTATTTAACTGATTTCAACGTGACCGGACCGTATACCTGCCTCCTATGTCCGGAGTGGTTCATAAACAGGAATAGGATTGTGATACATTATGTGATAGATCACAAGAAGGATTATTGTGGAATTTGCAGATACTTAGTACCAAACAGAGAAGCTTGGGCGAAGCACAAGAAATTCCACACACCATGGCAATGCTCGCAATGCGATGAAAACTTTGCAGTGCAGTCAGAGCTACGTAAACATTTCAGTGAGGCTCACAATCTTGTTCACTGTCGCTTCTGCTACCTGCGACTCCCTGACGATGATCATTATCAGAGACATTTGTTTCAAAAACATTGCGTCACAAAAATATCAAATATACAAGGAGACTGTTTATGGGATTTTGAATGTAAAGGCGATCAAAAGTTCTTATGCTTACTCTGCTCAAAGTCAAACGATGTGGGGCGACAGTTTGCGGATCACTACATGTCGTACCACCACTTCACTCTGAAATGCTTCATGTTCTTTGTTGCTGGAATTGATTTACCGTTTAAGGTCAAAGGTGTAGATTTGACTACAGACTTTGTCAACACACAGCTAAAAGCTTACAGCACTTTTGGTTACGTAGACTTTATAAAAAGCCTGAAATTCAAAGAAGAATCTGTGACTGTTACTGAAGAAACTCCAATTACAGTTGATTGTGAACCGGAAATGAAAGATCTTGGTGAAAATTATGAAGACAGTGAAGAATTGAAGCTCAGTGAGGAAATAAGAGGCTACAGAGGAGTTTACGATTTTGATATCACACTCTTAGAAGTCATTACAACACAAAAATGCTATTTCGACTATGTAAACGCAACTCTAAATGGAATAAATTCTAATGCAGTGCCATTGTCATCTGAAATTACATATACAAATGCCGTTGTTGAATCCAAACCTATTAACTGCTGTCTCTGTACAGAAGTTTTCATGAAAAAGAATGCTTTAGAGAGCCACTTTACTAAAGCTCATGGTGCAAAAGCCCTACCAATATACTGGTGCAGGGTTTGTGCTGCTGTTTTTGACAGTTTTAACGAATTAGAGACGCATTCCATGCAAGAGTTGGGTGAATTTGAAGGTCTGTGGATCTGTCAGTTTTGTGACAAGGAATTTGATGGCAGAGAGGATACAAGGAAACATTTGACACAGCACTGGGACGAGATGGAATATGACAACTGCTTCAGTCCGCATTTAGGTTTCAAATGCAAGTTCTGTCCAGTTCTGTTTTGGAATGAAACTGACCGAGAGTCTCACCATGTTAGAGTGCACTTTCAAACAAATAAAAGTGACTTCTATAACTGTACACTTTGTGGTGAAGTTTTCGGGGACAAGGTCTTTTTTGTTCATCACTATTTTGAGAAACACGACAGTGAGACTCCATATCTCTTGAAATGCACTATGTGTTCCATTGTGCTCAAAAATGTTAAAGGAATGAGGAGCCACTTTGACACTCAACACAGGGGTGCTAAAAGATTATTTTGTTGCATGGATGAATGCAAATTCCGACCTTTTAGCCAGAGGAAATCTTTCCTAATACATGTAAAGTCATTCCACGACCCGATATATTCCAGTACTCGGTCAGTAAACTGCGAGGTATGTGGGTTAGAGTTCAGCACTGCTCAAGCACGCTTCTTGCATGTTAGAAGAGTTCACGGGCCGGGCAGGTACAGCTGTACTTTGTGCGATGAGGTGCTCCACACTAGTGATGAAAGAAAGATCCACTACCTCATTCGTCACCCGGGTCGTTCTCAATATAAATGCAACTCATGCGATAAGTCCTTCCAATACAAATCCTCGCTGTACATGCATAAACAAGAACATTCACCGAATAAGAAGGATTTTAGTTGCgagtattgtgggaaaagctttttgAAAAAAGATTCGTACCGCGAGCACATAATGATTCACGAAGCGCCTCGACACGCCTGCTCCTACTGCCCCATGCGTTTCGTGCAACGTTCCAACATGCTGCGTCACGAACGGAGGCACACCGGGGAAAGACCCTATGCCTGTCAGTACTGCCCTAGGACGTTTTCAGACAAAGGTGCATGTAATTCACATTCAAGGACGCATTTAAAAACTACATCGTTCGCGTGCGTTTACTGTGGACAGACCTTCGTGCAGAAATCCAAGCTTACTTACCACATCCGCAAACACACTGGAGAAAATTTGGAGACTTGTTCTGTCTGCTCGAAGATGTTCACAAGTGCGTGCTCGTTGCGAGAACACATGAGAATACATCAAAGGACGAAGTTGAAAAAGACAGTCAAATGTCCTCTGTGCAAGAACATGTACGCCATGCAGCACGACATGCTGCGTCACATGCGTACAGCGCACACCGGCGTGCAGTTCAAGTGCCCGCTGTGCCGCAAGTGCCTCGGCACGCCGGGCACGCTCCGCGAGCACGTGCTCACTCACAGCCAACTCAACACTTACCGGTGCAAAATCTGTCCCAAATCTTACCATGTGAAGAAGTCTATAGTCAAACACCTGGAAAAACGGCATGGTGTAAAACCCCCCATCAGTTCCAAACTGCATTACCGGCACCTCGACCCTAAAGAATGTGGCCTAGGCTTAGACGATGATGTCATGGAAAAAATCTTCGGTAAAGTCAAAAAGACAAGAAACACGGTCGTTGCAGACTTTGCCACCTTTAACAGAGGTCTTCAAGTCAAAGAAAGTGGTCACTGCAATCCTGTAGGGAATCCGAGTAAGGAAACATTTCAGATAGAATCGACTATCCGGGTAAAGTTGGAGCCCGATGATCATGAAGAGGAGGTGCCTCCACTCGACTTCGTGAATGTGAAAATAGAAAGTATAGAAGAGGACCACACTTCTGATGCAGAAATGTCATGA
Protein Sequence: MSSDDSEDEPLSVLAALKKRDVSGLEILPIFKTEGSSAKLNIKKECDVSITLQRIQNELLPVVERPTDVWLYLTDFNVTGPYTCLLCPEWFINRNRIVIHYVIDHKKDYCGICRYLVPNREAWAKHKKFHTPWQCSQCDENFAVQSELRKHFSEAHNLVHCRFCYLRLPDDDHYQRHLFQKHCVTKISNIQGDCLWDFECKGDQKFLCLLCSKSNDVGRQFADHYMSYHHFTLKCFMFFVAGIDLPFKVKGVDLTTDFVNTQLKAYSTFGYVDFIKSLKFKEESVTVTEETPITVDCEPEMKDLGENYEDSEELKLSEEIRGYRGVYDFDITLLEVITTQKCYFDYVNATLNGINSNAVPLSSEITYTNAVVESKPINCCLCTEVFMKKNALESHFTKAHGAKALPIYWCRVCAAVFDSFNELETHSMQELGEFEGLWICQFCDKEFDGREDTRKHLTQHWDEMEYDNCFSPHLGFKCKFCPVLFWNETDRESHHVRVHFQTNKSDFYNCTLCGEVFGDKVFFVHHYFEKHDSETPYLLKCTMCSIVLKNVKGMRSHFDTQHRGAKRLFCCMDECKFRPFSQRKSFLIHVKSFHDPIYSSTRSVNCEVCGLEFSTAQARFLHVRRVHGPGRYSCTLCDEVLHTSDERKIHYLIRHPGRSQYKCNSCDKSFQYKSSLYMHKQEHSPNKKDFSCEYCGKSFLKKDSYREHIMIHEAPRHACSYCPMRFVQRSNMLRHERRHTGERPYACQYCPRTFSDKGACNSHSRTHLKTTSFACVYCGQTFVQKSKLTYHIRKHTGENLETCSVCSKMFTSACSLREHMRIHQRTKLKKTVKCPLCKNMYAMQHDMLRHMRTAHTGVQFKCPLCRKCLGTPGTLREHVLTHSQLNTYRCKICPKSYHVKKSIVKHLEKRHGVKPPISSKLHYRHLDPKECGLGLDDDVMEKIFGKVKKTRNTVVADFATFNRGLQVKESGHCNPVGNPSKETFQIESTIRVKLEPDDHEEEVPPLDFVNVKIESIEEDHTSDAEMS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00033190;
90% Identity: iTF_00033190;
80% Identity: -