Basic Information

Insect: Agriopis marginaria
Gene Symbol: -
Assembly: GCA_932301435.1
Location: CAKOAR010000248.1:1876425-1894246[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0081 0.48 11.3 0.8 1 23 288 310 288 310 0.97

2 11 0.0078 0.46 11.4 0.3 2 23 318 339 317 339 0.92

3 11 0.55 32 5.6 0.5 1 23 343 365 343 365 0.97

4 11 0.00046 0.027 15.2 0.5 1 23 370 393 370 393 0.98

5 11 0.0034 0.2 12.5 0.5 1 23 397 420 397 420 0.93

6 11 0.0064 0.38 11.6 0.2 2 21 437 456 437 461 0.92

7 11 0.0017 0.1 13.4 0.3 3 23 471 492 471 492 0.96

8 11 2.3e-06 0.00014 22.5 0.8 1 23 545 567 545 567 0.99

9 11 1.3e-07 7.6e-06 26.4 2.3 1 23 573 595 573 595 0.99

10 11 0.22 13 6.8 3.8 1 23 601 623 601 623 0.98

11 11 5.3e-05 0.0031 18.2 0.2 1 23 629 652 629 652 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0081	0.48	11.3	0.8	1	23	288	310	288	310	0.97
2	11	0.0078	0.46	11.4	0.3	2	23	318	339	317	339	0.92
3	11	0.55	32	5.6	0.5	1	23	343	365	343	365	0.97
4	11	0.00046	0.027	15.2	0.5	1	23	370	393	370	393	0.98
5	11	0.0034	0.2	12.5	0.5	1	23	397	420	397	420	0.93
6	11	0.0064	0.38	11.6	0.2	2	21	437	456	437	461	0.92
7	11	0.0017	0.1	13.4	0.3	3	23	471	492	471	492	0.96
8	11	2.3e-06	0.00014	22.5	0.8	1	23	545	567	545	567	0.99
9	11	1.3e-07	7.6e-06	26.4	2.3	1	23	573	595	573	595	0.99
10	11	0.22	13	6.8	3.8	1	23	601	623	601	623	0.98
11	11	5.3e-05	0.0031	18.2	0.2	1	23	629	652	629	652	0.98

Sequence Information

Coding Sequence: ATGGAGTTTTTACCGTTTGAAATTGGTCACGAGCATATTAAAGTGTGTAGGGTCTGCCTACTTACGGATGTGAAAATGTATGACCTACAGAGTTATCCACTGGAAAGGCACTTCGAAGCAGTTATTGGGATTCCTGTAATAAGTACAATGGAGCTTCCTCCGTTCCTGTGCTTCGAGTGCACCAGCCTGGTGAGAAAGTTCTCGATGTTCAAAGAGCGCTGTCTCAGAGGACAAGCCACCCTGTATAGCATCTTGCAGAACACTGGAAAGCTGACAGAGGAAGATATAAAGCAGACCGACAGAGAGAGCCTCCACATCAGCTCAACCTTGACCGTCTGTGACACTACTGCTGAGGAAAGCATACATCATTCTGAGGATGAACCAATGGTTAAGGATGAACCTGTTGTTTTACACGGAAATGGGCTAGAAGTAACCATAGACATAAAAGAAGAAGACGACTTCGAGTATCCTGTACCAGAGTTTCCTCAGTCCAGTGACGATGAGCCGCTCTCCGTACATAAGAGTGGCAAGGAAAAAAAGAAGGGGAAAAAGAGGGGCCGGAAGAGGAAGGTGGAAGAAAATTTGGTCAACAAGTTGCAGCTTGAAAAAGATAGTGAAGAGAAACGTTTGGAGCCATCCCAGCCGTCGGAGGAACAAGTCGCAGTGCGCAAGAAAGGTCGTCCGAAGAAAATAGCAGATCTCTGTCCAACCCCCGCACCGCGCCGCACTAAGAATACGGGCGGCGTGCCCACTGATGACGTCAACTTGGATGACTACGTCACTATCATTACACTCACGCTGGATGAGCAACTGGAGGAGATAAACAAGCGTAAAGAGTCCAGCAACTACTTGAACGCTGCCTTCCAGTGCGGGCTCTGCTATAAAGGATTCATCGACACCAACGCTTGGAAACATCACATCGGGAAACACGATCCGAGCGCGGGTCCAGTGGAGTGTTCCGTGTGCCGGTTTCGTTTCCCGTCTCGTCGCGCGCTACAAAAGCACGCCGTCAACCACGAGAAGAAATATGCGTGTAAAGCGTGCGCGTACGTCTCCAAAACCACAACTCAAGCAAAGCAGCATCAACGATGGCACAAAGGCGTGACGTATACATGTGAATATTGTGACGAAGTTTCTACTAAATGGACGTCGTACCTGTCCCACGTGCGGATCAAACATCCCTCCGAGCACATCTGCGGCGTGTGCGGGTACTCCTTCGTCAGCCGGCTCGGTCTCACCATGCACAAGACTATGATGCATAAGGACGTGCGAGAAAAATCAGAAGGGTCAGAAGAGCAGTCCGGCCCGTACTGTCAGGAGTGCGACGTGAAATTTGTTTCCACCGAGGCCTACAACCGACATATGGTCACTTCTGTCAAACATTCCGAGGGGAACAACTTTAGCAAGGGTTGCCGCGTGTGCGGCGCTACGTTCGGCACCCCAGAAGAGTTGAGACTCCACCACCGGGCGGAGCACGCGCGCTCGCGCCCCAAGAACTACGGCAAGAAGAACAACCAGGGCAAGTGGCCCGACAACTGTGCACACTGCGGTGAAATGATAGAGAACGCGCGCGAACACTGGACCCACTTCCGTCGCGTCCACCCGGACAAGGCGTATCCTATACAGAAGAACTACGTCTGCGATATCTGCGGGAAGAGCTTCCGGGGGAACGCATTCCTAACGTACCACAAGCGCACGCACACATCGGAACGAGCGTACAAGTGCACCACTTGTGGGAAGGCGTTCTACAACCGAACTAACCTGAACATGCACCTGCGCACGCACTCGGCCGCGCGCCCCTACCCCTGCGACGTCTGTTGCAAGGCGTTCAAATGTAAGGGAGCGCTCGACCGACACTACAGAAGTCACACGGGCGTGAAACCGTACGAGTGTGAAGTGTGCGGCAAAGCGTTCGGTCAGTCCAACAGCCGCAAGCTCCACGTGCGGACTGTTCACTTGAAACAGCCCGCGCCCTACCTGCACCGAGCGAGGCTGGACAAGCGGAAACCGCCCACAAAAGAACTCTCCGTTGAACATCCTTTCGTTTACTAA
Protein Sequence: MEFLPFEIGHEHIKVCRVCLLTDVKMYDLQSYPLERHFEAVIGIPVISTMELPPFLCFECTSLVRKFSMFKERCLRGQATLYSILQNTGKLTEEDIKQTDRESLHISSTLTVCDTTAEESIHHSEDEPMVKDEPVVLHGNGLEVTIDIKEEDDFEYPVPEFPQSSDDEPLSVHKSGKEKKKGKKRGRKRKVEENLVNKLQLEKDSEEKRLEPSQPSEEQVAVRKKGRPKKIADLCPTPAPRRTKNTGGVPTDDVNLDDYVTIITLTLDEQLEEINKRKESSNYLNAAFQCGLCYKGFIDTNAWKHHIGKHDPSAGPVECSVCRFRFPSRRALQKHAVNHEKKYACKACAYVSKTTTQAKQHQRWHKGVTYTCEYCDEVSTKWTSYLSHVRIKHPSEHICGVCGYSFVSRLGLTMHKTMMHKDVREKSEGSEEQSGPYCQECDVKFVSTEAYNRHMVTSVKHSEGNNFSKGCRVCGATFGTPEELRLHHRAEHARSRPKNYGKKNNQGKWPDNCAHCGEMIENAREHWTHFRRVHPDKAYPIQKNYVCDICGKSFRGNAFLTYHKRTHTSERAYKCTTCGKAFYNRTNLNMHLRTHSAARPYPCDVCCKAFKCKGALDRHYRSHTGVKPYECEVCGKAFGQSNSRKLHVRTVHLKQPAPYLHRARLDKRKPPTKELSVEHPFVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00044783;
90% Identity: -
80% Identity: -