Amar017800.1
Basic Information
- Insect
- Agriopis marginaria
- Gene Symbol
- -
- Assembly
- GCA_932301435.1
- Location
- CAKOAR010000192.1:209901-214583[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.022 1.3 10.0 1.5 1 23 67 89 67 89 0.97 2 18 0.0059 0.35 11.8 0.4 2 23 117 139 116 139 0.96 3 18 0.0002 0.012 16.4 0.8 3 23 165 185 164 185 0.97 4 18 0.12 7.1 7.6 0.8 2 23 189 210 188 210 0.95 5 18 0.00097 0.058 14.2 2.5 1 23 215 238 215 238 0.95 6 18 1.7 1e+02 4.0 4.0 1 23 249 272 249 272 0.95 7 18 0.0014 0.081 13.8 1.0 1 23 278 301 278 301 0.93 8 18 0.98 58 4.8 1.0 2 10 306 314 305 317 0.91 9 18 0.033 1.9 9.4 1.9 1 23 367 389 367 389 0.97 10 18 0.0024 0.14 13.0 0.3 2 23 417 439 416 439 0.96 11 18 0.00035 0.021 15.6 2.3 3 23 465 485 464 485 0.97 12 18 0.048 2.8 8.9 0.6 1 23 488 510 488 510 0.97 13 18 0.0053 0.31 11.9 4.9 1 23 515 537 515 538 0.96 14 18 0.36 21 6.1 2.5 1 23 549 572 549 572 0.89 15 18 0.02 1.2 10.1 0.9 1 23 578 601 578 601 0.97 16 18 3.5e-07 2.1e-05 25.1 0.5 2 23 606 627 605 627 0.97 17 18 8.9e-05 0.0052 17.5 1.8 1 23 633 656 633 656 0.97 18 18 0.68 40 5.3 0.3 1 23 660 683 660 683 0.93
Sequence Information
- Coding Sequence
- ATGCCTCGTGAAGAGGCGAAACACGTGTCGACAAGAGTGCACCGAGGAAACGGACCTCCAGCGTCACCACAAGCCCCCGAATACACAGAAGTTAAGCCAAGAACTAGTTCGTGGAGTATTACAGTGCCAGAACGAAAGAACGCTGCAACGATGTTGCAATTCACAACAGTAATTCCTTTCACATTGTTACGTGGCGATTACAAATGCTTCTATTGTGATGAAAAATTCACAGAACTGCGTCCAGCTTTGCAGCACACAAAAACTCACATGGTCCCCAATCAGTCTACTTTACTCTGCAGCTATATCAAAAGAGGCAAACGAGCCATCACAGTGGACGTATCTGAATTGAAATGCAGGATCTGTGACCTGAAGTACTCAAAGCTGTACGATATTAGACAGCATTTGATCACCGCTCATAAGAAATTGTTTTACGACAAAGATGGAAATGGCATGATGGCGTATAACCTCAGCACACCGAGCGGCCAGGTCGCTTGCTATACATGCAGCAAGGAGTTCACCTCCTTTATCTCTTTAAATCGTCACATGAACGTCCACGACAACTTGATCTGCGCAACTTGCGGCTTAGGATTCTTGACGCATCAGAGACTGAAGAGCCATATGATTACCCACCAAGATGGGAATTACAAATGTAAAATATGTCAAAAAGTTTTCCCCACCACATTAAAGTTGCGTTACCACACGGACAAATATCACGAACAGGAAAACGAGAAAAAGCAAAAATGTCATAAGTGCCCACAGTGCTTAGAAAGGTTCTTCGGCCACTACAGCAAGATGACCCACTTGAGAGAAGTTCACGGAATCACTTTCAAGTTCGAGTGTCAGACTTGCCATGCGGTTTTTCCTAATAAATTGGCTTTGACCCGACACACCACACAGGTCCACATACAGAACATAGTGTGCAAAATCTGTGGGAAGTGTTACGGGGCGCCGAGAACTCCGGCGTCACCGCAAGCCCCCGCATACACAGAGGATAATCCGAGAAATAGCGCGTGTAGTATTACAGTGCCAGAACGAAAGAACGCTTCCACGCTATTACAATTCACAACAGTTTTACCTTTTAAATTGCTACGTGGAGATTACAAATGCTTCTATTGCGATGAAATATTCACAGAACTGCACCCAGCTTTGCAGCACACGAAAACGCACACTGTTCCAAATCAATCATCTCTACTGGGTAAATATATCAGAAGAGGTAAACGGGTTATCACAGTGGATGTATCTGAGCTAAAATGCAGGATTTGCGAGCTAAAGTACTCAAGACTGGATGATATTAGAAAACACTTGATCACCGCTCATAAGAAAATGTTTTATAACAAAGATGGAAATGGCATGATGGGGTATAACCTCAGCACACCGAGCGGTCACGTCGCTTGCTGCACATGCGGCATGGAATTCACCTCCTTTTTCTCTTTAAATCGACACATGAATGTCCACGATAACTTTGTCTGTGCAACTTGCGGCTTAGGCTTCTTGACTCATCAGAGACTGAAGAGTCATATGATTGTCCACCAAGATGGGAATTACAAATGTAAAACTTGTCAAAAAGTATTCCCCACCACATTAAAACTACGCTACCACACGGACCGCCACCACGAACAGGAGAACGAAAAAAAACAGAAGCGTCATAAATGTCCACATTGCTTGGAAAGATTTTCCGAATACTACCTAAGGGTGATGCATTTGAAAGATGCTCACGGAATCACTTTCAAGTTCGTGTGTCAAACTTGCAAGGCAGAGTTTCCAGCTAAATTGGCACTAACACATCACACAAGAAAGGTTCACTTACAAAATATAGTGTGCAAAATCTGTGGAAAGTGTTTTGGGACTCCAATTGCGTTGAGAAAACATATGAGATGGCATACAGGCGAGAGGAACTTCGTCTGCGCTGTCTGTCAGAAGACCTACAAGCATGAGAGAGACCTTCGAGGGCATATGAAGAAAGTTCATGGCTATGAGTTCACTTGCTTTAAATGCGGTAACGGGTTTTTGGACAAGGCTGATTGGGCGGAACATAAGAAGCAAGAGCATACAGATCAGTCGCTGTCAAAAGACTCAACTTTAGTCTAA
- Protein Sequence
- MPREEAKHVSTRVHRGNGPPASPQAPEYTEVKPRTSSWSITVPERKNAATMLQFTTVIPFTLLRGDYKCFYCDEKFTELRPALQHTKTHMVPNQSTLLCSYIKRGKRAITVDVSELKCRICDLKYSKLYDIRQHLITAHKKLFYDKDGNGMMAYNLSTPSGQVACYTCSKEFTSFISLNRHMNVHDNLICATCGLGFLTHQRLKSHMITHQDGNYKCKICQKVFPTTLKLRYHTDKYHEQENEKKQKCHKCPQCLERFFGHYSKMTHLREVHGITFKFECQTCHAVFPNKLALTRHTTQVHIQNIVCKICGKCYGAPRTPASPQAPAYTEDNPRNSACSITVPERKNASTLLQFTTVLPFKLLRGDYKCFYCDEIFTELHPALQHTKTHTVPNQSSLLGKYIRRGKRVITVDVSELKCRICELKYSRLDDIRKHLITAHKKMFYNKDGNGMMGYNLSTPSGHVACCTCGMEFTSFFSLNRHMNVHDNFVCATCGLGFLTHQRLKSHMIVHQDGNYKCKTCQKVFPTTLKLRYHTDRHHEQENEKKQKRHKCPHCLERFSEYYLRVMHLKDAHGITFKFVCQTCKAEFPAKLALTHHTRKVHLQNIVCKICGKCFGTPIALRKHMRWHTGERNFVCAVCQKTYKHERDLRGHMKKVHGYEFTCFKCGNGFLDKADWAEHKKQEHTDQSLSKDSTLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -