Amar005120.1
Basic Information
- Insect
- Agriopis marginaria
- Gene Symbol
- -
- Assembly
- GCA_932301435.1
- Location
- CAKOAR010000041.1:536877-558320[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.052 3.1 8.8 0.6 1 23 328 351 328 351 0.97 2 25 0.21 12 6.9 1.0 1 23 385 407 385 407 0.97 3 25 0.26 15 6.6 0.1 2 23 441 463 440 463 0.91 4 25 0.26 15 6.6 0.1 2 23 490 512 489 512 0.91 5 25 0.26 15 6.6 0.1 2 23 539 561 538 561 0.91 6 25 0.26 15 6.6 0.1 2 23 588 610 587 610 0.91 7 25 0.26 15 6.6 0.1 2 23 637 659 636 659 0.91 8 25 9.1 5.4e+02 1.7 0.0 2 23 686 708 685 708 0.89 9 25 0.26 15 6.6 0.1 2 23 735 757 734 757 0.91 10 25 0.26 15 6.6 0.1 2 23 784 806 783 806 0.91 11 25 0.26 15 6.6 0.1 2 23 833 855 832 855 0.91 12 25 0.26 15 6.6 0.1 2 23 882 904 881 904 0.91 13 25 0.26 15 6.6 0.1 2 23 931 953 930 953 0.91 14 25 0.26 15 6.6 0.1 2 23 980 1002 979 1002 0.91 15 25 9.1 5.4e+02 1.7 0.0 2 23 1029 1051 1028 1051 0.89 16 25 0.26 15 6.6 0.1 2 23 1078 1100 1077 1100 0.91 17 25 0.26 15 6.6 0.1 2 23 1127 1149 1126 1149 0.91 18 25 0.26 15 6.6 0.1 2 23 1176 1198 1175 1198 0.91 19 25 0.26 15 6.6 0.1 2 23 1225 1247 1224 1247 0.91 20 25 0.26 15 6.6 0.1 2 23 1274 1296 1273 1296 0.91 21 25 0.036 2.2 9.3 0.0 2 23 1309 1331 1308 1331 0.95 22 25 0.068 4 8.4 1.4 3 23 1392 1412 1390 1412 0.95 23 25 0.0027 0.16 12.8 1.7 1 23 1418 1440 1418 1440 0.95 24 25 2.9e-06 0.00017 22.2 2.0 2 23 1446 1467 1445 1467 0.96 25 25 0.00047 0.028 15.2 0.9 1 23 1473 1496 1473 1496 0.96
Sequence Information
- Coding Sequence
- ATGAATATCTGTTTAGTCTGCTTGCGCACTGATAGACGTATCAAACCTAATAACGGACTGGCACAGTTCCACAACGAATTATGCGGTTTCACAATAAAAGACCCAATTCATACGCTTCACAATCTGCTGCCGCCTTCGTCACTAGGTGTATGGAAACCAAATCCTAAGACTAACTTGGAAACAAAGATTTCAGAGCCTGACTCTGAAGAAGTAAGTGCCCATTCAACTATACAAGAATTCATAAATAATTCATACATTTACGAAATAAAATTAGAATATGACCCAACAAACAGCATTGAGAGCATCGGTGATGATCTACAAAATGATACCATCATGGAAAATATTCCTGACTACATTGATGATGAAAAATATAATGAACTCGGTACAGAAAAGTTTGAACTTGGACAGAATGACTTTGAATGTAAAGAGTTTTTAAATGTTGACATCATTGGCAGAACTGATACTAAACACGAAGAGAAGACAAAACATCCCAAAAAAATAAAAGTGACACGTAATAAAAAAGGACGAAATGTATCCAGAACACGGAAATTGATTTGCAATGCAGAAGAATCAAAACTAATCGCTCGCAAAAAAAACAAAGTGACAAGTGTTAGAAATCGACGTTCCAAGTGGGAAGAAATAGAAAGGTTGGAAGAGGAACTGGTCCTCAAGTTATCTTCATTCGGGGAGATAGTGACAGACGAGGGTACGACAGTAGACCGGGATCTGGTCACCAAGTTTCTGCGACATGACGCGGGCGCGCCGGTTGTAAGCAGGCTCCGGGAGGCTACGTGTCGAGAGGACGTATTAGACCTCTCACCCGACATTGAAGCAGCACTGACCACTATAAACAATGACTGGACCAGTGACGACAAACCTGACTACAAGTCAATGTACGATATAGAGTATCTGTCCACCCTCGAGAAGAAGCTAGAGGAGTTCCAGAAGAGGAAGACGTATGAGCACTATGTGAAGGCGAAGCACAAGTGCGAGGTCTGCTACCAGCCGTTCCGGGGACCGATAGCACTGGACTCGCACAAGCAGACTTATCACGGTGAGAGCGCGGGCGGCCAGTTCTGTCCGATCTGCAAGATGCGGGTCACATTTAACTGTCGCAATCGGAACAGACACTCGGAGACACACTACGCCGTGTACAAGTGCAAACTGTGCCCCCTCGTCACATACTACAGAAATACAATGAAGGAACATGCTGAGAAACACCGAGGCAAAACTTATCCGTGTGGACCTTGCAACGTGACTTACAAATGCATGTCTGCGTACTACAGTCACATGGCTACGTACCACCGGCGCGGGCGCATCGTGTGTGCGACGTGCGGCCGGGGGTTCCCCTCAGAGAAGAGCCGACAAGTGCACGCCTCCATAACACATCGGGTGAGTGAAACAACTTACAGATGCATGTCTGCGCACTACAGTCACGTGGCTACGTACCACCGGCGCGGGCGCATCGTGTGTGCGACGTGCGGCCGGGGGTTCCCCTCAGAGAAGAGCCGACAAGTGCACGCCTCCATAACACATCGGGTGAGTGAAACAACTTACAGATGCATGTCTGCGCACTACAGTCACGTGGCTACGTACCACCGGCGCGGGCGCATCGTGTGTGCGACGTGCGGCCGGGGGTTCCCCTCAGAGAAGAGCCGACAAGTGCACGCCTCCATAACACATCGGGTGAGTGAAACAACTTACAGATGCATGTCTGCGCACTACAGTCACGTGGCTACGTACCACCGGCGCGGGCGCATCGTGTGTGCGACGTGCGGCCGGGGGTTCCCCTCAGAGAAGAGCCGACAAGTGCACGCCTCCATAACACATCGGGTGAGTGAAACAACTTACAGATGCATGTCTGCGCACTACAGTCACGTGGCTACGTACCACCGGCGCGGGCGCATCGTGTGTGCGACGTGCGGTCGGGGGTTCCCCTCAGAGAAGAGCCGACAAGTGCACGCCTCCATAACACATCGGGTGAGTGAAACAACTTACAGATGCATGTCTGCGCACTACAGTCACGTGGCTACGTACCACCGGCGCGGGCGCATCGTGTGTGCGACGTGCGGCCGGGGGTTGCCCTCAGAGAAGAGCCGACAAGTGCACGCCTCCATAACACATCGGGTGAGTGAAACAACTTACAGATGCATGTCTGCGCACTACAGTCACGTGGCTACGTACCACCGGCGCGGGCGCATCGTGTGTGCGACGTGCGGCCGGGGGTTCCCCTCAGAGAAGAGCCGACAAGTGCACGCCTCCATAACACATCGGGTGAGTGAAACAACTTACAGATGCATGTCTGCGCACTACAGTCACGTGGCTACGTACCACCGGCGCGGGCGCATCGTGTGTGCGACGTGCGGCCGGGGGTTCCCCTCAGAGAAGAGCCGACAAGTGCACGCCTCCATAACACATCGGGTGAGTGAAACAACTTACAGATGCATGTCTGCGTACTACAGTCACGTGGCTACGTACCACCGGCGCGGGCGCATCGTGTGTGCGACGTGCGGCCGGGGGTTCCCCTCAGAGAAGAGCCGACAAGTGCACGCCTCCATAACACATCGGGTGAGTGAAACAACTTACAGATGCATGTCTGCGCACTACAGTCACGTGGCTACGTACCACCGGCGCGGGCGCATCGTGTGTGCGACGTGCGGCCGGGGGTTCCCCTCAGAGAAGAGCCGACAAGTGCACGCCTCCATAACACATCGGGTGAGTGAAACAACTTACAGATGCATGTCTGCGCACTACAGTCACGTGGCTACGTACCACCGGCGCGGGCGCATCGTGTGTGCGACGTGCGGCCGGGGGTTCCCCTCAGAGAAGAGCCGACAAGTGCACGCCTCCATAACACATCGGGTGAGTGAAACAACTTACAGATGCATGTCTGCGCACTACAGTCACGTGGCTACGTACCACCGGCGCGGGCGCATCGTGTGTGCGACGTGCGGTCGGGGGTTCCCCTCAGAGAAGAGCCGACAAGTGCACGCCTCCATAACACATCGGGTGAGTGAAACAACTTACAGATGCATGTCTGCGCACTACAGTCACGTGGCTACGTACCACCGGCGCGGGCGCATCGTGTGTGCGACGTGCGGCCGGGGGTTGCCCTCAGAGAAGAGCCGACAAGTGCACGCCTCCATAACACATCGGGTGAGTGAAACAACTTACAGATGCATGTCTGCGCACTACAGTCACGTGGCTACGTACCACCGGCGCGGGCGCATCGTGTGTGCGACGTGCGGCCGGGGGTTCCCCTCAGAGAAGAGCCGACAAGTGCACGCCTCCATAACACATCGGGTGAGTGAAACAACTTACAGATGCATGTCTGCGCACTACAGTCACGTGGCTACGTACCACCGGCGCGGGCGCATCGTGTGTGCGACGTGCGGCCGGGGGTTCCCCTCAGAGAAGAGCCGACAAGTGCACGCCTCCATAACACATCGGGTGAGTGAAACAACTTACAGATGCATGTCTGCGTACTACAGTCACGTGGCTACGTACCACCGGCGCGGGCGCATCGTGTGTGCGACGTGCGGCCGGGGGTTCCCCTCAGAGAAGAGCCGACAAGTGCACGCCTCCATAACACATCGGGTGAGTGAAACAACTTACAGATGCATGTCTGCGCACTACAGTCACGTGGCTACGTACCACCGGCGCGGGCGCATCGTGTGTGCGACGTGCGGCCGGGGGTTCCCCTCAGAGAAGAGCCGACAAGTGCACGCCTCCATAACACATCGGGTGAGTGAAACAACTTACAGATGCATGTCTGCGCACTACAGTCACGTGGCTACGTACCACCGGCGCGGGCGCATCGTGTGTGCGACGTGCGGCCGGGGGTTCCCCTCAGAGAAGAGCCGACAAGTGCACGCCTCCATAACACATCGGGACGCCCCCCCAAGTGTGGAGGGTACGGGGGTGCGATGCGAGGAGTGTGACGTCACGCTCCCCTCGCAGAGTGTATACGAGGCACACATACGTGACGTGCACGAACCGCCACCTGATGTGGAAACTAAGACGCTACCACAGAGAGATGGTTGTTCTTTGCCTGGATACAAAACGTCATGCAAAGTGTCCCGCGCGGGAGCCGGCTGGTTGAAAACGCACTTCAAGTGGGCGCACCCCGATCTCAACATGGACGTTTTGTACGCGGACACGAAACAACATCTGTGCGACATCTGTGGAGTTGGACACAGTTCGTTGAACAACCTCCGTGACCACATGAACAGTCACACGGGCAGCTTGCCGCACGCGTGCGACGTCTGCCCCAAGCAGTTCAGGAGCGCAGTCCTGCTGAGTAACCACCGGCTGCACCACTTCCCGCCCACCCTGCCCTGCCCCCACTGCGGGAACAAGTTCAAGACCAAGTCTAACCTTTACAATCACATGAAGGGTCACGCCGGCGAAAGAAGCTACAAGTGTCATATATGCGATAAAGGCTTCCTTCACAGCGCAGCCCTAAACGAACACGTGCGAGGCGTGCATTACAATATACGACGTGCCAAGAGGGGGGGCACTCGGGAGGGGGTGGGGGGGAAACGGGTCACTGAGAAGACGAAAAAAGTCGCTGAGATGGGGGCAAAGATCAAAACAGCTTTTGAGGGAGACGATTATGTGAGCTCGGATGATAACAGTGAATAA
- Protein Sequence
- MNICLVCLRTDRRIKPNNGLAQFHNELCGFTIKDPIHTLHNLLPPSSLGVWKPNPKTNLETKISEPDSEEVSAHSTIQEFINNSYIYEIKLEYDPTNSIESIGDDLQNDTIMENIPDYIDDEKYNELGTEKFELGQNDFECKEFLNVDIIGRTDTKHEEKTKHPKKIKVTRNKKGRNVSRTRKLICNAEESKLIARKKNKVTSVRNRRSKWEEIERLEEELVLKLSSFGEIVTDEGTTVDRDLVTKFLRHDAGAPVVSRLREATCREDVLDLSPDIEAALTTINNDWTSDDKPDYKSMYDIEYLSTLEKKLEEFQKRKTYEHYVKAKHKCEVCYQPFRGPIALDSHKQTYHGESAGGQFCPICKMRVTFNCRNRNRHSETHYAVYKCKLCPLVTYYRNTMKEHAEKHRGKTYPCGPCNVTYKCMSAYYSHMATYHRRGRIVCATCGRGFPSEKSRQVHASITHRVSETTYRCMSAHYSHVATYHRRGRIVCATCGRGFPSEKSRQVHASITHRVSETTYRCMSAHYSHVATYHRRGRIVCATCGRGFPSEKSRQVHASITHRVSETTYRCMSAHYSHVATYHRRGRIVCATCGRGFPSEKSRQVHASITHRVSETTYRCMSAHYSHVATYHRRGRIVCATCGRGFPSEKSRQVHASITHRVSETTYRCMSAHYSHVATYHRRGRIVCATCGRGLPSEKSRQVHASITHRVSETTYRCMSAHYSHVATYHRRGRIVCATCGRGFPSEKSRQVHASITHRVSETTYRCMSAHYSHVATYHRRGRIVCATCGRGFPSEKSRQVHASITHRVSETTYRCMSAYYSHVATYHRRGRIVCATCGRGFPSEKSRQVHASITHRVSETTYRCMSAHYSHVATYHRRGRIVCATCGRGFPSEKSRQVHASITHRVSETTYRCMSAHYSHVATYHRRGRIVCATCGRGFPSEKSRQVHASITHRVSETTYRCMSAHYSHVATYHRRGRIVCATCGRGFPSEKSRQVHASITHRVSETTYRCMSAHYSHVATYHRRGRIVCATCGRGLPSEKSRQVHASITHRVSETTYRCMSAHYSHVATYHRRGRIVCATCGRGFPSEKSRQVHASITHRVSETTYRCMSAHYSHVATYHRRGRIVCATCGRGFPSEKSRQVHASITHRVSETTYRCMSAYYSHVATYHRRGRIVCATCGRGFPSEKSRQVHASITHRVSETTYRCMSAHYSHVATYHRRGRIVCATCGRGFPSEKSRQVHASITHRVSETTYRCMSAHYSHVATYHRRGRIVCATCGRGFPSEKSRQVHASITHRDAPPSVEGTGVRCEECDVTLPSQSVYEAHIRDVHEPPPDVETKTLPQRDGCSLPGYKTSCKVSRAGAGWLKTHFKWAHPDLNMDVLYADTKQHLCDICGVGHSSLNNLRDHMNSHTGSLPHACDVCPKQFRSAVLLSNHRLHHFPPTLPCPHCGNKFKTKSNLYNHMKGHAGERSYKCHICDKGFLHSAALNEHVRGVHYNIRRAKRGGTREGVGGKRVTEKTKKVAEMGAKIKTAFEGDDYVSSDDNSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -