Amar007770.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agriopis marginaria
Gene Symbol
-
Assembly
GCA_932301435.1
Location
CAKOAR010000059.1:4209253-4235699[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.65 38 5.3 1.0 2 23 264 285 263 285 0.85
2 12 0.0042 0.25 12.2 1.2 1 21 290 310 290 314 0.93
3 12 0.027 1.6 9.7 1.2 2 23 424 446 423 446 0.94
4 12 0.0019 0.11 13.3 0.0 1 23 452 474 452 474 0.97
5 12 0.0085 0.51 11.3 0.2 1 23 482 505 482 505 0.90
6 12 4.5e-07 2.7e-05 24.7 3.8 1 23 510 532 510 532 0.98
7 12 5.3e-05 0.0032 18.2 3.7 1 23 538 560 538 560 0.97
8 12 9.3e-05 0.0055 17.4 2.1 3 23 568 588 566 588 0.98
9 12 2e-07 1.2e-05 25.8 0.1 1 23 594 616 594 616 0.98
10 12 0.007 0.42 11.5 11.0 1 23 622 644 622 644 0.99
11 12 0.0023 0.14 13.0 1.0 1 23 684 706 684 706 0.99
12 12 2.2e-05 0.0013 19.4 5.8 1 23 712 735 712 735 0.96

Sequence Information

Coding Sequence
ATGGAAGTGTTTCTGTATAATTCTACTGTTTGCAGATTATGCGGTGAAGAAAACGACAATGGGACATTTTTATATTCGGCTGAAGAAAATAATCAAAACATAAGTGATTTAGTCAATGCATATCTGCCTATCAGGGTATGCGACGATGGTCAACTGCCCAGAACTATCTGTCCCGGTTGTACTATTCAGCTGGAAGCCACCGTAGAGTTCATAAACTTGATTATCAATGGCCAGAAAGTTATCCGAGCACTTCATCAAAGGGAGATAGAATACAAAAAGACAGTGTTGAATGACCAAGATCTAGAAACTGTTACAGAAAATTATGTGTCTGAAGTGGATATAGAAAATGGCGTTTACCAACCCGAGCATGCAGTCTCCCTCCAAGTGGCGGGCATTGACAAGCCCCGCCGCAAGCGTGGCAGGCCGCCCAAGAAACATAAAACTCCCGAGGAGCTGGCTCAGGAGGCTGCAGCCAAGGAGAAGGAGCTTCAGCAAGCCACCCAGGATAGAAAGGATGAAGAGGCGACTGGCAAAAGGAAAAGGAAAACTCCTACAAGGTTCAGGGAGGTTGTCCAGGGCAAAGAGCTAGAGAAGATATTCAAAGAGGAAGGTATGACCGACGGGGAAGAAAGCGAGCCTGAAATCAAGCCTGATATAGAACGTATGAACTCGGAGTTACAGCTGAAGGTTCCTGAGGTGATTGGGCATACAGACTCTGGAGAACTTGTGGTGGTTGTGAAGGGCAAAGGAAGAGGAAGGCCTAAAGGTCGCCTAAATCAAAAACGCCAGCAATGCGCCATATGCGACAAGGAATTTTCCTGCTCCGGCCGGTACATGTCCCACGTGGCCCAGCATGGCCCAGTGCTGTACCAGTGCCAGGAGTGCTCCAACACCTTCAATACTAGACTGGATTTTACTAAGCATCAGGAGGACACTGGTCACAAGGGGCAAACTGTCATCCCGTATGATAAGAAGGATATTATGTCTATAAAGATGAAAGACCCATTGATGCTAGAGCCCGCCCCGGCTCCTGTTGAGGTGCCAGCCACCGAAGCCACCCCGGCCGGGTCCTTGCCAGATCTGAACCCTGAACCAGCAACCAACACTAATGACAATGCTGTTTATTTGACAATGGACTCGAGCCACCCCAATGGTGCAAAAGTGGAATCTGTGGAAACAGTCGAAGCAAACCAAAACGCTTCTATAGAAGATAAGCCCACAGACGATCCGGAGCCCGAAGAGGTGGTGACCCAGGGTAAAGTGAAGCTGTCATGTCCACACTGCGTAAAACTGTTCAGCAGCAAGCAGAGCCGCTCCATGCATATCAGGGCAGTGCATAAAGGCGAGCGTCCGTACGCGTGCAAGGTGTGCGGCGCCATGTTTGCGTACCCGCGCGCACTCGCTCTGCACGCTCTCAAGCATCGCACGCGCGCTTCTAAAGGATACGCTTGCGATCTGTGCGGGAAGGTGCTGAACCACCCGTCGTCCGTCACATACCACAAAGAAGCGGAGCACTCGAAGCAGATGTTCGTATGCAACAAATGTGGCAAAACCTTCAAACACAAGCAACTCCTGCAGCGCCACCAGTTGGTGCATACCCAGTACCGCCCGTATCACTGCAAGCAATGCAACGCGTCATTCAAAACGAAGGCGAATTTATTCAACCATCAGTTGCTCCACTCGGGTGTACGGAAGTTCGGGTGTGATATCTGCAAGCAACGGTTCGCGCACAAGACGAGCCTCACGCTGCACATGCGCTGGCACAATGGTCAGAAGCCCTACGTTTGCAAAGTGTGCGGTAAAGCGTTCAGTCAGAAGGGCAACCTCTCGGAGCACGCACGCATCCACACCGGGGAGAAACCGTTCCAGTGCCAGCACTGCTCGCGCTGCTTCACCACTTCCTCGCAACACCGGTTACATATGCGGAGACACATCGACATTGAAGATAGGATTCAGCCGATGATGACGCGCGTCCGTCCATACCTGCCCCCGGTGCTCGCGGGCCCGCCCCCCGAGCCTCCCACGCCGCACACCATGTCTGCGGGGGTGTACAAGTGCGGCTGGTGCGCGCGCACGTGCGTGTCGCGCTGGGCGCTCTCCAAGCACGCCAGGAGGCACACGGGGGAGAGGCCGTTCAAGTGCCCGCATTGTCCTCGCGCCTTCGCAGACTGTTCCAACCTGAACAAACATAAAAAGCACGTGCACAAACAAATCAGCCTACTTGCCAACCAGCTGCAACGTCCCAACATCCCTCCGCTGACCATCGTGCCCACACCTGCTCGCTCTCCCGTGGAGGAGCGCACGGAGCTGGTAGTAGAGAGTACGACCAATGGCGTGGAAGAGCGCGTCATATACGTCACTTATGACGTCGACGATCCTCATTCGCCGGACTATCAGCTCGTTGACCCGGAACAGGCAGCAGAGATGCTCGAGCGCTCGGATGTAACTGCGACTGAGTTGTATTCAGAGTCGATACTGCGCGAGAAAGTTAACGAACCGGCTCTCCAGGAGCACATGTCGGTGACAGATGAGCAAGGTAACCCGCTACACTTCACTATGCAAGATGGCACGCAACTCGCGATCACTTCACTCGATGGACAGTCTTTACAGGTTATCACTGAAGACGGTCAGACCATACCAGTTGAGATTAATGGATTTTCCCCAGGAGGAGTTCAGCTGGCATCTCCTCCCGCGACGCCCACGCATCAGCTCACCCAGAAGTCTGAAGAGGGGTCGAGCTCTCCCGTTACTCATTACTACACCATCGTGTGA
Protein Sequence
MEVFLYNSTVCRLCGEENDNGTFLYSAEENNQNISDLVNAYLPIRVCDDGQLPRTICPGCTIQLEATVEFINLIINGQKVIRALHQREIEYKKTVLNDQDLETVTENYVSEVDIENGVYQPEHAVSLQVAGIDKPRRKRGRPPKKHKTPEELAQEAAAKEKELQQATQDRKDEEATGKRKRKTPTRFREVVQGKELEKIFKEEGMTDGEESEPEIKPDIERMNSELQLKVPEVIGHTDSGELVVVVKGKGRGRPKGRLNQKRQQCAICDKEFSCSGRYMSHVAQHGPVLYQCQECSNTFNTRLDFTKHQEDTGHKGQTVIPYDKKDIMSIKMKDPLMLEPAPAPVEVPATEATPAGSLPDLNPEPATNTNDNAVYLTMDSSHPNGAKVESVETVEANQNASIEDKPTDDPEPEEVVTQGKVKLSCPHCVKLFSSKQSRSMHIRAVHKGERPYACKVCGAMFAYPRALALHALKHRTRASKGYACDLCGKVLNHPSSVTYHKEAEHSKQMFVCNKCGKTFKHKQLLQRHQLVHTQYRPYHCKQCNASFKTKANLFNHQLLHSGVRKFGCDICKQRFAHKTSLTLHMRWHNGQKPYVCKVCGKAFSQKGNLSEHARIHTGEKPFQCQHCSRCFTTSSQHRLHMRRHIDIEDRIQPMMTRVRPYLPPVLAGPPPEPPTPHTMSAGVYKCGWCARTCVSRWALSKHARRHTGERPFKCPHCPRAFADCSNLNKHKKHVHKQISLLANQLQRPNIPPLTIVPTPARSPVEERTELVVESTTNGVEERVIYVTYDVDDPHSPDYQLVDPEQAAEMLERSDVTATELYSESILREKVNEPALQEHMSVTDEQGNPLHFTMQDGTQLAITSLDGQSLQVITEDGQTIPVEINGFSPGGVQLASPPATPTHQLTQKSEEGSSSPVTHYYTIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00206331;
90% Identity
iTF_00033149;
80% Identity
-