Amar017795.1
Basic Information
- Insect
- Agriopis marginaria
- Gene Symbol
- -
- Assembly
- GCA_932301435.1
- Location
- CAKOAR010000192.1:159160-191674[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.0017 0.1 13.5 0.1 1 23 235 257 235 257 0.97 2 31 0.00047 0.028 15.2 0.5 1 23 261 283 261 283 0.96 3 31 4.4 2.6e+02 2.7 1.6 1 12 290 301 290 303 0.91 4 31 5.2 3.1e+02 2.5 0.4 1 23 441 463 441 463 0.91 5 31 0.62 37 5.4 0.0 2 23 487 509 486 509 0.92 6 31 2.2 1.3e+02 3.7 0.9 1 23 583 605 583 605 0.95 7 31 1.5 90 4.2 0.0 2 23 629 651 628 651 0.92 8 31 0.015 0.9 10.5 0.7 1 23 672 694 672 694 0.97 9 31 0.0014 0.084 13.7 0.4 1 23 698 721 698 721 0.95 10 31 0.0015 0.091 13.6 2.5 1 23 728 751 728 751 0.97 11 31 0.16 9.5 7.3 1.7 2 23 757 779 757 779 0.95 12 31 0.04 2.4 9.1 0.2 2 23 863 885 862 885 0.93 13 31 0.00033 0.02 15.7 0.1 1 23 906 928 906 928 0.97 14 31 0.028 1.6 9.7 0.1 2 23 1074 1096 1073 1096 0.93 15 31 0.02 1.2 10.1 0.6 1 23 1117 1139 1117 1139 0.97 16 31 0.01 0.62 11.0 0.1 1 23 1143 1166 1143 1166 0.94 17 31 0.025 1.5 9.8 4.0 1 23 1173 1196 1173 1196 0.97 18 31 0.026 1.5 9.7 3.0 1 23 1201 1224 1201 1224 0.96 19 31 0.00018 0.01 16.6 1.1 1 23 1230 1253 1230 1253 0.98 20 31 0.96 57 4.8 2.2 3 23 1311 1331 1309 1331 0.97 21 31 4 2.4e+02 2.8 0.6 2 23 1358 1380 1357 1380 0.90 22 31 0.00069 0.041 14.7 0.4 1 23 1401 1423 1401 1423 0.96 23 31 0.0038 0.23 12.4 0.2 1 23 1427 1450 1427 1450 0.96 24 31 0.7 41 5.2 0.1 1 23 1491 1514 1491 1514 0.95 25 31 0.84 49 5.0 0.0 2 23 1538 1560 1537 1560 0.91 26 31 0.0013 0.079 13.8 0.3 1 23 1581 1603 1581 1603 0.97 27 31 0.28 17 6.5 3.1 2 19 1608 1625 1607 1629 0.90 28 31 0.0014 0.081 13.8 3.1 1 23 1636 1659 1636 1659 0.98 29 31 0.22 13 6.8 3.9 1 23 1664 1687 1664 1687 0.97 30 31 0.018 1.1 10.3 1.7 1 23 1693 1716 1693 1716 0.96 31 31 0.00021 0.012 16.3 4.2 1 23 1722 1744 1722 1744 0.98
Sequence Information
- Coding Sequence
- ATGTTCCCACTGCTGGGACACAGGCCTCTCAGAGATGGGCTCTTGCAGTTCACCTCGGTTGAATTTCAAATCATCAAAAATCATACTAAAGACCATCAGGATAATAGATCTAATGCTATCTACTATACTCGAGGATACATCAGCATAGAATGGGCGAAAAGTGGACCAAAAATGGAAAGGACGCAGATAGACGGAGTCAAAATTAAACCATTTGAAAGTACGCCTAAAGACAGGATTAAAATTGAACCAAGTAAAAACTCGGCAATAGATGGGATTAAAACTAGCTCTTCTGAAAGTGTACCGAGAAATCGATTTAAAATTGAAACAACAAAAATATCCGCTAAAAAGTTTACCGACGCGCGACACAACGCGGCCATTATGTTGGAGTGCTCCAACATGTGCCCTTTCAGACTTTATGATAACGTAATATTTGTTTGTGGGTACTGTCCCTTCAAGTCACCAGATTTCCTCCCCATCAGGGACCACTCTAAAGATCACCTGGAAAGAGATTTTGCAAGCTTTTTGCGCTCTAGGAGATATGATTCGGAATGCAAAGTAGACGTAACGAAACTTAGTTGTGTGCTCTGTCAGACCAGCATGAAGGATGTAAAGACTCTGTTTGAACATCTCATAGAAACTCACAACAAGCCCTTGCTACGAAAATACAGAATCGGTGTAGTGCCGTATTTGCTATGCGACGGTTACGCTTGCGCCGATTGTGATCTCACCTTCGTTGGGTTTAAGACCCTAAACAGACACGTTGCTACGCACTACGGCCAATTTATTTGCTCTGAATGCGGTCAGACCTTCTTTGGTTCGTCAACTCTGAAATATCATTTATTGGGACACTCGAAGCAAGCGAGAGAATTTAAATGTTCTGTATGTCACGAATTCTTTCCTACCACGCAAGGAACCATCACCCTGAAATCGACCACACAGAGTGCACACAGTGACTTTGGAGACGCGCGGGACAACGCAGCCGTAATTTTGGAATGCTCTAACATGTGTCTGTTCAAATTTTGTGATAAAAACACATTCAGCTGTGCGTACTGTCCCTATAAATCACCAGATTTCGGCCCCATCAAGAGCCATAGCAAAGAACATAAACTCAAAGCTGTAGCTCTTCGGAACGTAAATCCCTCTTCGGTCTGCAAAGCAGATATAACAGATCTGAAATGTGAGATTTGCAACGAAAGATCCGTTGCTGTAGAATGGACAACAGATAATGACATAGACCCTAAATTCGAAGGCGCGCTGGCTAATGCAGCTAAAATTTTGGATTTCTCTAACGCTTGCCCATTCAAATTTCACGGGAATGTATTCAGATGTGCGTATTGTTCGTATACGTCGCCAGATTTTGGTCCTATTAGAAGTCATACCCAAGAACATAAGAATAAAGCTCTGGCATTACGCAAGATGAAATCTGCTACAGGATGTAAAGTAGAAGTAACTGATCTGAAATGTGAAATATGTCAAGAAGACATAACAGATATATCGATGCTGTTTGAACATCTCATTGAAGATCACAATGAACAATTAAATAGAAATATTAAACCCGGCGTATTACCTTACCTACTAACTGATGGTTTCGCATGCGCCGACTGTGGTCTTAAATTTGATCTTTTTCGAACAAACAACATAAAACGGACCACACAGAATTTACACAAAGAGTTTGGGGACGCGCGGGACAACGCAGCCGTAATATTGGAGTTTTCTAATGCGTGTCCATTCAGACACCATAACACATTCTGTTGTGCATATTGTCCTTACACGTCGCCTGATTTCAGCCCTATCAAGGTACATACCAAGGAGCACAAGGATAGAGCTATGGCCGTTCGCAACGTAGATTGTTCTTCTGTCTGTAAGGTAGACATAACAGAACTAAAATGTGAGATATGTCAAGAACTCATAACAGATATATCGACACTGTTCGAACACCTTATCGAAGCTCACAATAAACCTTTGAATAGAAATTTCAGACCAGGAGTCGTGCCCTACTTGTTAAACGACGGGTTCGCTTGCGCCGACTGTGGGCTGACCTTCGACGTGTTCCGCAATTTAAATTGCCATATGAATGTACACTACCCATATTTTATTTGTTCTGATTGCGGCCACGGTTTCATGAACGAGTCGCGATTAAAGGCTCACGTGAAATGGGTACACAATAAACCGCAAAAGACATTCAAATGTTCGAAATGTGATGAAACTTTTACTTCCGATCAAAGCAAACGCAAACACATGATATCTACTCATAATATGTTTAATCGCAAATGTCCTTACTGCTCAGAGTCATTTAAAGCACATCGCGACAGAGTGATACATTTAAATAAGTATCACGGAACCATCAGCAAAAAACTGACCACTCGAGACTTTGGAGACGCGCGGGACAACGCTGCCATGATTTTACAGTTTTCTAACGTTTGTCCGTTCAAATTTATACGAAACATATTTGGCTGTATGTACTGTCCTTACACGTCGCCAGATTTTGAGCCTATCAAAAGCCATTCTAAAGATCATAAAGATAGAGCTAAGTTTCTTAGCAAAATGGGCCGCTCTTCAGTGTGCAAGGTAGACGTAACAGATTTGAAATGTGAGATATGTAAAGAAACTATTAAAGATTTTTCAACGCTGTTTGAACATCTTATCGAAGCGCACAACAAACCTTTAAAAAGAAATTTCAGACCAGGAGTCGTGCCTTACTTGTTGAATGAAGGGTTCGCTTGCGCCGACTGTGGCGCGACGTTCGTTATGTTTCCAAATTTGAATTCGCACATGAATAAGCACTACCCACATTTTTCGGTTATTCTGCTAGACCCTCATCTAAGCAGAGCCGGAGTCGTGCCTTACCTGTTGAACGAAGGGTTCGCGTGCGCGGAGGGCGATAAAACGTTCGATGTATTCCTAAATTTAAATTTCCACATGAACAAACATTACTCACACTTTATCTGCCCTAATTGCGGAACCATCACCATAAAATGGACCACAAAGGATTTACACAAAGATTTTGGAGATGCGCGGGACAACGCAGCCATGATTTTGAAGTTTTCTAACGTTTGTCCGTTTAAATTTCACCGAAACGCATTCGGATGTGCGTATTGTCCTTTCACGTCGCCAGATTTTGGCCCAATCAAGAGACATACCAAAGAACATAAAAATGAAGCTCTAGCCGTTCGCAACTTGGATTGTTCTTCGGTCTGTAAGGTAGACGTTACAGATTTGAGATGCAAAATCTGTCAGAAGGCCATAACAGATATATCAACGTTGTTTGAACACCTTATCGAAGGGCACAACAAACCTTTAAAAAGAAATTTCAGACCAGGAGTCGTGCCTTACTTGTTGAACGACGGGTTCGCTTGCGCCGACTGCGGGGTGACGTTCGATGTGTTCCGCAATTTAAATTGCCATATGAATGTACATTACCCATATTTCATCTGCTCTGAGTGTGGTCAGGGTTTCATGAACGAGCAGCGGTTAAAGGCTCACGTAGCATCAATACACAAGAAACCTCAACGAACATACCGATGTGCAAAATGCGACCAGTTTTTTCCTACTTATCACAGCAAGCGCAAACACATTTTATCTACGCATAACATCTTCGCTCACAAATGCCCATACTGTCCAGAATCGTTCAAAGGACATCGTGAAAGAGTGATACATCTGAACAAGTATCACAACAAGAATATCAACTATCCATGCTCGTTGTGCTCCAAAGTTTGCACGACTGCCTCAAACCGGGCTTCCcatatgcggagtgtccacgtgaaggacaaacgatgcgtgtgcgcagtttgtggcgacatgttcactactgcggAACCCGGCAAACGGAGGCTGAAAATCGGGGAGTATCACGACGCGCGAGACAATGCGGCTATTATTCTCGAATGTTCCAACGTGTGCCCCTTTAAATGGCGGAAAAACGTTTTCGGTTGCTCGTACTGTAACTTCACATGCCAAGATTTCGGTCCATTCAAAAATCATATGGCAAGCCATCCGGTGAAATCGGAAAGAATCGAATTCCTCCGTAACTCGCGTCCCGCTGACACCATTAAAACGGACGTCGTCAATTTGAAATGCGATCTTTGTCACGAGAGGATGAAAGATATAGCGACCCTTATGGATCACCTTAGCGACAAACATAATAAGCCTATAGTGAAAAAATACGACTCTGGTATCGTACCTTACTTGTTAGATAACGGATTCACATGTGCGTACTGCGGTGAATCATTCGATCGATTTATAACTTTAAACACGCACGTCATACAGCACAAATTGAACTTCGCCTGCTCTCAATGCGGCCAGTACATATCTAGTCCTGAAGGATTGAGGAAGCACATCCTTAGACGCCACGTCAAAACTCCGAGAAGCAACTTCCGACCAAAACTAAGCGACTATAACGACGCCAGACACAATGCGTCCATCATTCTAGAATGCTCCAACATTTGTCCTTTCAAATGGCATCGAAATGTATTTAGGTGTGGTTACTGTGATTTTAAATCGGCTGATTTCGGTCCGGTAAGAGCACACATTAATAATGTCCACCCGAAAAGACTCGAAGCCCTTCACTACTCGCGTCCAACAGAAATTTTCAAAGCAGACGTCACGAATCTCAAATGCGAACTGTGCGATCAAACAATACCAGATATGAAAGCGCTTATTGATCACTTAAGCGATACCCACAAAAAGTCTATCAAGAAACACTACGGCGCTGGCATCGTTCCATTTCTATTATGCGACGGATTCACGTGCGCCGATTGCGGCCTAACTTTTGATCGGTTTATGAAATTAAATATTCACGTTAACGAGCATTACCCTAATTGCATCTGTTCACAATGCGGACAGGCCTTCTCTAGCGAAAACAGACTTAGAGCGCATTGCGAACAGCACAAGAAAAAGATAATGCAGTTCAAATGCGGATCTTGCGGAGAGGTGTTTCACTCCAGATCCAGTAAACAAAAGCACATGGAGACAAAGCACGATATCCTTCCACACAAATGCCCTTATTGTAATGACGCGTTTAAATCCTACGCGCACAGGTTGATTCACTTAAATAAGTACCATGGCAAGAAGATAGAGTTCCCTTGTCGTATGTGCTCGACTATTTTTAAAACAGCCTCTAAGAGAGCTGATCATATGAGGCACATTCACTTGAGAGATAAGCAGTACTCTTGCTCCTTGTGTGATTACATGTGCACAAGCTTGACTCAGTTGAAAAAGCATATGATGAAGCACAGTGGGGAGAGGAAATATAAGTAA
- Protein Sequence
- MFPLLGHRPLRDGLLQFTSVEFQIIKNHTKDHQDNRSNAIYYTRGYISIEWAKSGPKMERTQIDGVKIKPFESTPKDRIKIEPSKNSAIDGIKTSSSESVPRNRFKIETTKISAKKFTDARHNAAIMLECSNMCPFRLYDNVIFVCGYCPFKSPDFLPIRDHSKDHLERDFASFLRSRRYDSECKVDVTKLSCVLCQTSMKDVKTLFEHLIETHNKPLLRKYRIGVVPYLLCDGYACADCDLTFVGFKTLNRHVATHYGQFICSECGQTFFGSSTLKYHLLGHSKQAREFKCSVCHEFFPTTQGTITLKSTTQSAHSDFGDARDNAAVILECSNMCLFKFCDKNTFSCAYCPYKSPDFGPIKSHSKEHKLKAVALRNVNPSSVCKADITDLKCEICNERSVAVEWTTDNDIDPKFEGALANAAKILDFSNACPFKFHGNVFRCAYCSYTSPDFGPIRSHTQEHKNKALALRKMKSATGCKVEVTDLKCEICQEDITDISMLFEHLIEDHNEQLNRNIKPGVLPYLLTDGFACADCGLKFDLFRTNNIKRTTQNLHKEFGDARDNAAVILEFSNACPFRHHNTFCCAYCPYTSPDFSPIKVHTKEHKDRAMAVRNVDCSSVCKVDITELKCEICQELITDISTLFEHLIEAHNKPLNRNFRPGVVPYLLNDGFACADCGLTFDVFRNLNCHMNVHYPYFICSDCGHGFMNESRLKAHVKWVHNKPQKTFKCSKCDETFTSDQSKRKHMISTHNMFNRKCPYCSESFKAHRDRVIHLNKYHGTISKKLTTRDFGDARDNAAMILQFSNVCPFKFIRNIFGCMYCPYTSPDFEPIKSHSKDHKDRAKFLSKMGRSSVCKVDVTDLKCEICKETIKDFSTLFEHLIEAHNKPLKRNFRPGVVPYLLNEGFACADCGATFVMFPNLNSHMNKHYPHFSVILLDPHLSRAGVVPYLLNEGFACAEGDKTFDVFLNLNFHMNKHYSHFICPNCGTITIKWTTKDLHKDFGDARDNAAMILKFSNVCPFKFHRNAFGCAYCPFTSPDFGPIKRHTKEHKNEALAVRNLDCSSVCKVDVTDLRCKICQKAITDISTLFEHLIEGHNKPLKRNFRPGVVPYLLNDGFACADCGVTFDVFRNLNCHMNVHYPYFICSECGQGFMNEQRLKAHVASIHKKPQRTYRCAKCDQFFPTYHSKRKHILSTHNIFAHKCPYCPESFKGHRERVIHLNKYHNKNINYPCSLCSKVCTTASNRASHMRSVHVKDKRCVCAVCGDMFTTAEPGKRRLKIGEYHDARDNAAIILECSNVCPFKWRKNVFGCSYCNFTCQDFGPFKNHMASHPVKSERIEFLRNSRPADTIKTDVVNLKCDLCHERMKDIATLMDHLSDKHNKPIVKKYDSGIVPYLLDNGFTCAYCGESFDRFITLNTHVIQHKLNFACSQCGQYISSPEGLRKHILRRHVKTPRSNFRPKLSDYNDARHNASIILECSNICPFKWHRNVFRCGYCDFKSADFGPVRAHINNVHPKRLEALHYSRPTEIFKADVTNLKCELCDQTIPDMKALIDHLSDTHKKSIKKHYGAGIVPFLLCDGFTCADCGLTFDRFMKLNIHVNEHYPNCICSQCGQAFSSENRLRAHCEQHKKKIMQFKCGSCGEVFHSRSSKQKHMETKHDILPHKCPYCNDAFKSYAHRLIHLNKYHGKKIEFPCRMCSTIFKTASKRADHMRHIHLRDKQYSCSLCDYMCTSLTQLKKHMMKHSGERKYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -