Amar013253.1
Basic Information
- Insect
- Agriopis marginaria
- Gene Symbol
- Zbtb41
- Assembly
- GCA_932301435.1
- Location
- CAKOAR010000122.1:636122-642355[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.1 2.5e+02 2.8 0.1 12 23 199 211 187 211 0.81 2 15 0.019 1.1 10.1 0.2 3 23 266 286 265 286 0.97 3 15 8 4.7e+02 1.9 0.2 6 23 298 316 298 316 0.92 4 15 1.2 72 4.5 0.7 2 23 327 349 326 349 0.91 5 15 3e-07 1.8e-05 25.3 1.7 2 23 371 392 371 392 0.97 6 15 4.4e-06 0.00026 21.6 1.8 1 23 398 421 398 421 0.96 7 15 0.075 4.4 8.3 0.1 1 23 427 449 427 449 0.94 8 15 0.0012 0.073 13.9 0.1 1 23 455 477 455 477 0.98 9 15 0.043 2.6 9.0 2.2 1 23 616 638 616 638 0.98 10 15 0.0004 0.024 15.4 1.2 2 23 645 667 644 667 0.93 11 15 3.6e-06 0.00022 21.9 1.1 2 23 674 695 673 695 0.97 12 15 6.5e-07 3.9e-05 24.2 0.1 1 23 701 723 701 723 0.98 13 15 0.00097 0.057 14.2 0.1 1 23 729 751 729 751 0.97 14 15 0.0073 0.43 11.5 0.8 1 23 757 779 757 779 0.93 15 15 0.0025 0.15 13.0 3.4 1 23 785 808 785 809 0.95
Sequence Information
- Coding Sequence
- ATGAATATTGGCACAGAACAAGTGTTTATAGTGAACGCTACTGAACTAGATCAACACACATCGACACCCCTGCAGCGAGCTTTTGCTATGCCCGTAACTGTGGCAACCATGCAGCCCGAAGAGACTGGAACAAGCATGTGCCTGCCGCAGTCCATGGGCCCTCCGTCTCGCACACAGATGTGCCGGCTCTGTGCCACAGTAACAGAGATGGTGGTGCCCATCTTCCATGGTGAAGGGCTACAGAACAACCTCGCAGATAAGATACACCAGCATCTTCCTATACAGGTGTCAGAAAGTGACCTGCTGCCGATAGTGATGTGCTACCAGTGTACCAGCACACTGCTGGCGTGGCACGAGCTGGTGGTGTGCTCCGTGCAGGCCGACTCGGTGATGCGAGAGCGGTTCAATCTCACCTTCCCACAACACCAGCAACAACAGCAGCCAAATTTGCAATCTAGTCAAAACCAAATCAAAAACGAAAAGTCAGAATTACCTGAAATCATAAAATCCGTCCTCACAGAGTACTTACTCTCCCTAGAAATGGATTCTCAAGTGGAACTAGTCTGCCAGAGATGCGACTCCAAGCCGGCTTTGACAGCTTCAGACTTCACCAACCATATGATCACTATTCACTATTCAGAAGTACTCAACGAAAATGCTGTAAATTTGTTCATAAAAGATCATGTTACATTTGAAGAACCACTTGTTTCTGATTTAGAGACAGATGAAGAAAATAGAGATGATTCTGAAGCTGCAGAATCGCTAAAAACAACAAAAAAGTTACCAACTTTGCTGTGTCCATATTGTGACAGTGGTTTTTCTTCCACCTCCCGGCTTATTTACCACCTCGGAAAACATATCGAGATCTGTATAGAAAATGGCGTCAAGTGTTGCGATTCCATCTACAATACTAAGAAAGATTTTGTGTCACATTTACAAGAAAAGCATGTCAACAGACACATAGACAATACGGAAACTATGTGCAAAAGCTGTGACTTTATTGCAGAAACTGCAGAACAATTGCAAAATCACGTCGGAAAGTGTCATGACAACAAAAAAGTAAAGAAACAAAAAAATATAAGCGCCAAAAATCAGAAGTGTATTCCGGCCGTGTGTCCAGAATGCAACAAGACTTTTTCGAACAAATATAACATGTTCAATCACATGAAGTCTCACGATAATACGCAGACGTACGCGTGCTGTCGATGCGGAAAAGCATATAGTACGAAAGGGAACTTACGACAGCATATGAAGTTGATACACGAGGGAGTTCTGTCGCACGTTTGTGGAGTTTGCGGAGAGCAGTTCCCTACGCGCGTGGCACGCGACGTTCACGCTCGGCTGCATACGGGAGCTAAACCTTTCCGTTGCGAGCTGTGCAGTGCCGCCTTCCGCGCCGAAGACACCTTACAACGGCACCTTGACATGCACTTTGATATACGAAAGCACGAGAGCGGCCCTCGTCGCGCGCCTGCTCTCCAACGGGAATACTGGAGCGATGAGCTCGGCCTTGGAGCCGCAGAGCACGACACGGACACGCGGGACACTGACGACTCAGAGGAGCGGCCGCTCGCTAGCTTCGTCGCCGATAAAGAGGAGGCATTGCTCACATTCTACGATTCCCTCGTGCGTTTCCGGAACCACGTCGCAGCCGAGCACGCTCCTTTTTCCGAAGCTGAATCAGATTCGAATACAGAAAACGAGAGAACATCTATCGCTGGAGATGTCGGAGTGGACGCGTACGACGATCTATCGCATCGCAATCGCCGGCGCTCGAGACTGGACTTGACCACACGAGAGGAGATAGCCGCCGCGCGCACTCGAGCGGACGACGGCCGGCTCGTGTTCCAGTGCTCTGTTTGCAGCAAACAGCTGAGTTCAGCGCACACGCTGATATTCCACCGTCGGATCCACACAGGCGAGCGGCCCTGTATCTGCCACGTGTGTGGGGCTCAGTTCCGCACGGCGCCGGGGCTACAGCGGCACTTGCAAGAGACGCACGAACGTCGTCGCCGCATCACTTGCCGGACTTGCCAGAGAACATTCGCGAACGCACAGAATTTGAAGCAACATATGAGGATACACACGGGAGAGCGCCCGTACGAGTGTCCCGTGTGCGGGAAGACGTTCGCGCAGAGCGGGTCGTTACACGCGCACCGCGCAGTGCACCGCGACTCGCGGCCGCACGTGTGCGCGGAGTGTGGGGCTGCGTTCCGTCTGCGCGGCGGGCTCGCGCGCCATCGGCTGCGGCATTCGGGCGAGAGGCCTCACGCGTGCGGCGTGTGTCCCCGCGCGTTCCGTTCGCGGCACGAGGCGCAGGCGCACCGCACGGCGCATGGGGACGCGCGCCCGCACGCCTGCGACCTCTGTCCCGCCGCGTTCCGCGTGCGGCGCGCGCTCAGACATCACCAGCGGAGGCTGCATCATCTGGACGCACCGCTGCCACCACCGCATCAACAAGTGGCATTGCAGCCGCCGCTCGGGGACCTCGCACCGCCTTATTAG
- Protein Sequence
- MNIGTEQVFIVNATELDQHTSTPLQRAFAMPVTVATMQPEETGTSMCLPQSMGPPSRTQMCRLCATVTEMVVPIFHGEGLQNNLADKIHQHLPIQVSESDLLPIVMCYQCTSTLLAWHELVVCSVQADSVMRERFNLTFPQHQQQQQPNLQSSQNQIKNEKSELPEIIKSVLTEYLLSLEMDSQVELVCQRCDSKPALTASDFTNHMITIHYSEVLNENAVNLFIKDHVTFEEPLVSDLETDEENRDDSEAAESLKTTKKLPTLLCPYCDSGFSSTSRLIYHLGKHIEICIENGVKCCDSIYNTKKDFVSHLQEKHVNRHIDNTETMCKSCDFIAETAEQLQNHVGKCHDNKKVKKQKNISAKNQKCIPAVCPECNKTFSNKYNMFNHMKSHDNTQTYACCRCGKAYSTKGNLRQHMKLIHEGVLSHVCGVCGEQFPTRVARDVHARLHTGAKPFRCELCSAAFRAEDTLQRHLDMHFDIRKHESGPRRAPALQREYWSDELGLGAAEHDTDTRDTDDSEERPLASFVADKEEALLTFYDSLVRFRNHVAAEHAPFSEAESDSNTENERTSIAGDVGVDAYDDLSHRNRRRSRLDLTTREEIAAARTRADDGRLVFQCSVCSKQLSSAHTLIFHRRIHTGERPCICHVCGAQFRTAPGLQRHLQETHERRRRITCRTCQRTFANAQNLKQHMRIHTGERPYECPVCGKTFAQSGSLHAHRAVHRDSRPHVCAECGAAFRLRGGLARHRLRHSGERPHACGVCPRAFRSRHEAQAHRTAHGDARPHACDLCPAAFRVRRALRHHQRRLHHLDAPLPPPHQQVALQPPLGDLAPPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00033139;
- 90% Identity
- iTF_00033139;
- 80% Identity
- -