Amar004700.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agriopis marginaria
Gene Symbol
-
Assembly
GCA_932301435.1
Location
CAKOAR010000038.1:35578-39643[+]

Transcription Factor Domain

TF Family
zf-BED
Domain
zf-BED domain
PFAM
PF02892
TF Group
Zinc-Coordinating Group
Description
The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.084 1.5e+02 2.9 0.0 21 36 118 133 112 134 0.89
2 23 0.084 1.5e+02 2.9 0.0 21 36 158 173 152 174 0.89
3 23 0.09 1.6e+02 2.8 0.1 21 36 198 213 197 214 0.86
4 23 0.084 1.5e+02 2.9 0.0 21 36 238 253 232 254 0.89
5 23 0.084 1.5e+02 2.9 0.0 21 36 278 293 272 294 0.89
6 23 0.084 1.5e+02 2.9 0.0 21 36 318 333 312 334 0.89
7 23 0.084 1.5e+02 2.9 0.0 21 36 358 373 352 374 0.89
8 23 0.084 1.5e+02 2.9 0.0 21 36 398 413 392 414 0.89
9 23 0.084 1.5e+02 2.9 0.0 21 36 438 453 432 454 0.89
10 23 0.084 1.5e+02 2.9 0.0 21 36 478 493 472 494 0.89
11 23 0.084 1.5e+02 2.9 0.0 21 36 518 533 512 534 0.89
12 23 0.084 1.5e+02 2.9 0.0 21 36 558 573 552 574 0.89
13 23 0.084 1.5e+02 2.9 0.0 21 36 598 613 592 614 0.89
14 23 0.084 1.5e+02 2.9 0.0 21 36 638 653 632 654 0.89
15 23 0.084 1.5e+02 2.9 0.0 21 36 678 693 672 694 0.89
16 23 0.084 1.5e+02 2.9 0.0 21 36 718 733 712 734 0.89
17 23 0.084 1.5e+02 2.9 0.0 21 36 758 773 752 774 0.89
18 23 0.084 1.5e+02 2.9 0.0 21 36 798 813 792 814 0.89
19 23 0.084 1.5e+02 2.9 0.0 21 36 838 853 832 854 0.89
20 23 0.084 1.5e+02 2.9 0.0 21 36 878 893 872 894 0.89
21 23 0.084 1.5e+02 2.9 0.0 21 36 918 933 912 934 0.89
22 23 0.084 1.5e+02 2.9 0.0 21 36 958 973 952 974 0.89
23 23 2.7 4.8e+03 -2.0 0.0 21 29 998 1006 997 1009 0.84

Sequence Information

Coding Sequence
ATGATAGGACTCATGGAAGAGGAGGCCAGTGCCACTCACTGGCTGCCGCGTGCACATAGCGCCGTGTCGCGAGGTGACGCGGGACGTCACGCGCTGATGCAACCTGTCCTGCCATGTGCCTGCCCTGTCCTGCCCTGTGCCTCCCCTGTGCCTCCTGTGCCTCCCCTGTGCCTCCCCTGTGCCTCCCCTGTGCCTCCCGTGCCGCTGACTTCCAGCAGGCAAGTAGTTCCGCACGTGTGCGTAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGACCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACACTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTGTCAAGGGGCCGCGTCACTCGAACATTGTCGCAGAGTTCTCTCGTCACATGTCAACATGTGTTCGTGA
Protein Sequence
MIGLMEEEASATHWLPRAHSAVSRGDAGRHALMQPVLPCACPVLPCASPVPPVPPLCLPCASPVPPVPLTSSRQVVPHVCVVLSRGRVTRTLSQSSVKGPRHSNIVAEFCQGAASLEHCRRVLSRGRVTRTLSQSSVKGPRHSNIVAEFCQGAASLEHCRRVLSRGRVTRTLSQSSVKGPRHSNIVAEFCQGTASLEHCRRVLSRGRVTRTLSQSSVKGPRHSNTVAEFCQGAASLEHCRRVLSRGRVTRTLSQSSVKGPRHSNIVAEFCQGAASLEHCRRVLSRGRVTRTLSQSSVKGPRHSNIVAEFCQGAASLEHCRRVLSRGRVTRTLSQSSVKGPRHSNIVAEFCQGAASLEHCRRVLSRGRVTRTLSQSSVKGPRHSNTVAEFCQGAASLEHCRRVLSRGRVTRTLSQSSVKGPRHSNIVAEFCQGAASLEHCRRVLSRGRVTRTLSQSSVKGPRHSNIVAEFCQGAASLEHCRRVLSRGRVTRTLSQSSVKGPRHSNTVAEFCQGAASLEHCRRVLSRGRVTRTLSQSSVKGPRHSNTVAEFCQGAASLEHCRRVLSRGRVTRTLSQSSVKGPRHSNIVAEFCQGAASLEHCRRVLSRGRVTRTLSQSSVKGPRHSNIVAEFCQGAASLEHCRRVLSRGRVTRTLSQSSVKGPRHSNTVAEFCQGAASLEHCRRVLSRGRVTRTLSQSSVKGPRHSNIVAEFCQGAASLEHCRRVLSRGRVTRTLSQSSVKGPRHSNIVAEFCQGAASLEHCRRVLSRGRVTRTLSQSSVKGPRHSNTVAEFCQGAASLEHCRRVLSRGRVTRTLSQSSVKGPRHSNTVAEFCQGAASLEHCRRVLSRGRVTRTLSQSSVKGPRHSNIVAEFCQGAASLEHCRRVLSRGRVTRTLSQSSVKGPRHSNIVAEFCQGAASLEHCRRVLSRGRVTRTLSQSSVKGPRHSNIVAEFCQGAASLEHCRRVLSRGRVTRTLSQSSVKGPRHSNIVAEFCQGAASLEHCRRVLSSHVNMCS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-