Basic Information

Gene Symbol
nfxl1
Assembly
GCA_949125355.1
Location
OX421284.1:11362798-11365272[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 2 2.9e+04 -7.8 5.6 15 19 135 139 134 139 0.81
2 19 0.01 1.5e+02 3.2 0.3 4 10 170 176 169 177 0.97
3 19 3.1e-07 0.0044 17.6 15.9 3 19 187 203 186 203 0.95
4 19 1.1e-08 0.00016 22.3 12.3 3 19 240 256 238 256 0.91
5 19 1.7 2.4e+04 -3.9 1.9 6 10 281 285 280 285 0.83
6 19 1.9e-09 2.7e-05 24.7 12.4 1 19 291 309 291 309 0.99
7 19 1.3e-05 0.18 12.5 18.5 3 19 346 362 338 362 0.87
8 19 2 2.9e+04 -5.3 2.2 5 10 385 390 385 390 0.88
9 19 6e-06 0.085 13.5 18.3 1 18 396 413 396 414 0.97
10 19 2.3e-08 0.00034 21.2 16.9 1 19 423 441 423 441 0.99
11 19 0.00037 5.3 7.8 6.6 9 19 489 499 487 499 0.89
12 19 0.0038 54 4.6 6.5 1 12 509 519 509 519 0.96
13 19 0.4 5.8e+03 -1.9 3.4 14 18 548 552 548 553 0.85
14 19 0.23 3.3e+03 -1.1 0.1 8 12 569 573 568 574 0.82
15 19 5.4e-06 0.077 13.7 5.2 1 11 589 599 589 600 0.97
16 19 0.69 9.9e+03 -2.6 1.0 15 18 614 617 613 618 0.86
17 19 0.0015 21 5.9 14.6 3 18 630 646 629 647 0.87
18 19 9.4e-05 1.3 9.7 14.9 1 18 688 706 688 707 0.90
19 19 1.4 2e+04 -3.6 0.8 6 10 737 741 736 741 0.86

Sequence Information

Coding Sequence
ATGGCACGACGGTACCGCGACGCTGCAGCGAAATTGCAGCTAAATGTTCAGAAACATTTGAAAGAAATGAAAGATCACTTGTCTTCATCGGAAGATGAGGAACCCTACGAGCCCAGCGTGCTCGAAGGAGTGTTCCAGAGCTACTGGCGAGGTGGTGGCGATACTCACATGCTGAACAGAACCAAGAATCTTCTAGAAGAGGCGCTTAGCGGTCGCTCTGTCACTTGCCTCATTTGCATCGCTTCTATCAAACGAAACCACGCCATCTGGACTTGTGACCACTGCTACTCTTACTTCCATCTCTCCTGTATACAAAAATGGGCGAACGATAGCATTAGTCTGCGCACTGAGGAAAATCAAGGCCCGGTAACAgtatttgtgcaaaaaaaagttgaatggtGCTGCCCTAAGTGCCGGCAGGCGTATAGCAAGGAGCAGATACCTCGGAAGTACAGATGCTTCTGTGGTAAAACTGACGACCCACCGCAGCATCCATGGCAAATCCCCCACACTTGTGGAGAAGTCTGCGGGAAGAGATTGTCTATGGGAGATAACTGTAAACACAAGTGCCTCCTCCTCTGCCACCCTGGTCCATGCCCACCGTGTCCTCAAACAGTCAACGGAATATGCTTCTGccaaaaagaaaagaagaaagttAGGTGCAGCTCGGCTAAGTGGTCTTGTGGACAACAATGCAAGAAAACTCTCATCTGTCAAGCTCATAAGTGTGAAAACATATGCCATGATGGTGACTGTCCTCCGTGTAGCTACACCAGCACACAGCCTTGCCAATGTGGTCATGAAAAATCTAAAAGATCATGTAACAATCCGTTTTGGCAGTGTAAAAAACCATGCAATGCTCCATTTGACTGCGGCTATCATAAATGTGAGAAGATCTGTCACTCTGGCAGTTGTGGGGCCTGTCCAAACTCAGGCATGCGCTCCTGCCCTTGCGGAGCTAATGAGCGCTTCGTCCAATGTCCTGATGTCATGGAAGCATGTCTCGGAACCTGTGGTAAAAAGCATAACAATTGTGTACATAACTGTCCTGAGAAATGCCACAAAGGACCGTGCTCTCCTTGCCAAGTCCTCATACAGAAGAAATGTCTTTGCTCCACCCATACTAGATCTCTGCCGTGCAGTAAAGAGTTTAAATGTGAAACAAAATGTAGAGGCACCAGACCTTGCGGCAAGCATGGCTGTGCCCGCAAATGCTGCAATGGTAACTGCCCTCCATGTGAGAAAGCTTGCGATAAACCTCTGCAATGTGGTCGCCATAAATGCACTACCATCTGCCACCACGGACCATGCTACCCGTGTCCGCTGGAGTCTAAAGTAACCTGCAGATGTAAAGAAACATATCTTACAGTACCGTGTGGAAGGGAGAGGTTCGTTAAGCCGCCAAAGTGTGCTCTCCCATGCAAAGTTAAATACAAATGTGGTCACGTAGAagaaaacaaacattcatgtcatTTTGGAGAATGCCCTCCTTGTAAAGCTATCTGCAATAAAACATATCCAAAATGCGGACATGAATGTGTATCTATTTGTCATGAATATGTAGCTGTAGTATTCAAGCAAGTGGAAAAGCCAGCAACTCCATGGGAAGTCCAGCCTCCAAAGACTAAAATTATGACTTTAGAGTGCCCTCCATGTGATGTTCCCGTCCCTATCATATGTTTTGGAGAGCATGAGACAGAAGACCAACCATGTCATTCAGCTACAAGAAGACCATGCGGCCGGGAGTGTGGCAAACCATTGGCTTGTGGAAATCATACTTGTACTTTACTCTGTCATCTTTTCACTTCTGATGCTCAGTATCCACATGTGCCTTACTTATGTAAGCCCTGTGATAAGGGCTGTGAGAAACCCCGTCCAGAAAAATGCACACATAAATGTGCGAAAGGAGCCTGCCATCCAGGACAGTGCCCGTCTTGTGAAGTCTACGAACGCCTAGCTTGCCACTGTGGTACTACGGAACTGTATCTCCGCTGTCGCGAACTCAATTCAGCTACTGACGAAATGCTCTCATGCAAGCAGCAATGCCCAAAGAATTTAGAATGCGGTCACCGATGCCGAAACACCTGTCACTCTGGACATTGTGAAAATCAAACTTGTACAAAAAAGACTAAGATTCACTGCCAATGTGgtaatttgaaaaaggaagcaCCGTGCAATGCTGTCAGAAATGGGGAAGCAAAAGTTTCATGCGATGAAACATGTGAAACTAAAAAGCTGGCTGCAAAAATAGAGCATGAGAAAGAACAACAGAGACTCAAGCAGTTAGAGGAAGAGAGAAATAAGAAGGAACTGGCTGAGTACGAGTGGAAATTGAGCGGGAAAAAGAAGAAATATAAGGAAAAGAAGGTTTTGGTTAACAGGGACGATAGGAACTGGGTGCAGAAGTATTGGATACCTATTCTttctgtatttgttgttattttagcagcttcatattatatattttatttgtaa
Protein Sequence
MARRYRDAAAKLQLNVQKHLKEMKDHLSSSEDEEPYEPSVLEGVFQSYWRGGGDTHMLNRTKNLLEEALSGRSVTCLICIASIKRNHAIWTCDHCYSYFHLSCIQKWANDSISLRTEENQGPVTVFVQKKVEWCCPKCRQAYSKEQIPRKYRCFCGKTDDPPQHPWQIPHTCGEVCGKRLSMGDNCKHKCLLLCHPGPCPPCPQTVNGICFCQKEKKKVRCSSAKWSCGQQCKKTLICQAHKCENICHDGDCPPCSYTSTQPCQCGHEKSKRSCNNPFWQCKKPCNAPFDCGYHKCEKICHSGSCGACPNSGMRSCPCGANERFVQCPDVMEACLGTCGKKHNNCVHNCPEKCHKGPCSPCQVLIQKKCLCSTHTRSLPCSKEFKCETKCRGTRPCGKHGCARKCCNGNCPPCEKACDKPLQCGRHKCTTICHHGPCYPCPLESKVTCRCKETYLTVPCGRERFVKPPKCALPCKVKYKCGHVEENKHSCHFGECPPCKAICNKTYPKCGHECVSICHEYVAVVFKQVEKPATPWEVQPPKTKIMTLECPPCDVPVPIICFGEHETEDQPCHSATRRPCGRECGKPLACGNHTCTLLCHLFTSDAQYPHVPYLCKPCDKGCEKPRPEKCTHKCAKGACHPGQCPSCEVYERLACHCGTTELYLRCRELNSATDEMLSCKQQCPKNLECGHRCRNTCHSGHCENQTCTKKTKIHCQCGNLKKEAPCNAVRNGEAKVSCDETCETKKLAAKIEHEKEQQRLKQLEEERNKKELAEYEWKLSGKKKKYKEKKVLVNRDDRNWVQKYWIPILSVFVVILAASYYIFYL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00857272;
90% Identity
iTF_00207522;
80% Identity
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