Basic Information

Insect: Agriopis leucophaearia
Gene Symbol: -
Assembly: GCA_949125355.1
Location: OX421269.1:1896072-1907420[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.84 62 5.0 0.7 3 23 36 56 34 56 0.92

2 16 0.19 14 7.0 0.7 2 23 95 117 94 117 0.90

3 16 0.0048 0.35 12.0 2.4 1 23 119 142 119 142 0.96

4 16 0.21 15 6.9 1.6 3 23 168 188 167 188 0.96

5 16 0.0036 0.26 12.4 3.0 1 23 226 249 226 249 0.96

6 16 0.072 5.3 8.4 1.4 1 23 251 274 251 274 0.94

7 16 0.056 4.1 8.7 0.0 1 23 312 334 312 334 0.97

8 16 0.23 17 6.8 1.2 1 15 391 405 391 409 0.82

9 16 0.00026 0.019 16.1 1.6 1 23 419 442 419 442 0.94

10 16 0.011 0.83 10.9 0.4 3 23 453 474 451 474 0.97

11 16 0.32 23 6.3 0.0 4 23 486 505 486 505 0.94

12 16 0.15 11 7.3 0.3 3 23 513 533 513 533 0.98

13 16 0.018 1.3 10.3 0.2 1 20 538 557 538 560 0.93

14 16 0.047 3.4 8.9 4.8 1 23 566 588 566 588 0.97

15 16 6.3e-05 0.0046 18.0 8.3 1 23 594 616 594 616 0.98

16 16 0.00025 0.018 16.1 0.3 1 23 622 645 622 645 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.84	62	5.0	0.7	3	23	36	56	34	56	0.92
2	16	0.19	14	7.0	0.7	2	23	95	117	94	117	0.90
3	16	0.0048	0.35	12.0	2.4	1	23	119	142	119	142	0.96
4	16	0.21	15	6.9	1.6	3	23	168	188	167	188	0.96
5	16	0.0036	0.26	12.4	3.0	1	23	226	249	226	249	0.96
6	16	0.072	5.3	8.4	1.4	1	23	251	274	251	274	0.94
7	16	0.056	4.1	8.7	0.0	1	23	312	334	312	334	0.97
8	16	0.23	17	6.8	1.2	1	15	391	405	391	409	0.82
9	16	0.00026	0.019	16.1	1.6	1	23	419	442	419	442	0.94
10	16	0.011	0.83	10.9	0.4	3	23	453	474	451	474	0.97
11	16	0.32	23	6.3	0.0	4	23	486	505	486	505	0.94
12	16	0.15	11	7.3	0.3	3	23	513	533	513	533	0.98
13	16	0.018	1.3	10.3	0.2	1	20	538	557	538	560	0.93
14	16	0.047	3.4	8.9	4.8	1	23	566	588	566	588	0.97
15	16	6.3e-05	0.0046	18.0	8.3	1	23	594	616	594	616	0.98
16	16	0.00025	0.018	16.1	0.3	1	23	622	645	622	645	0.97

Sequence Information

Coding Sequence: ATGGCTTCATCCATAGCTTCACCCATAAATCTCGGCGACGGCGACAGCCTTGAAGAACACGGCTTTACAAAGCAAAGTATTATCGACAAAACTGGGGGCATATTTTGCCACATTTGTAATTCAATATTTGGAAACAAGAAAGATTTTGACGGTCACTATGCTTGGCATAATACTGGAGGAACAGATATTTTATACACATGTGTGGTATGCAAGTTGCAGTTAAATAATTACCTGAGGTTCAACAAGCACTGCTACCTCCACCATGTGATGAAGAACAAAATCcaATGCAAACACTGCAGCATAAAGTTTATGAAACAAAGTGTTCTCGATTCTCATGTTTCTGCTGTACATAACTACAAATGCCTCTCCTGCAATGAAACATTTACTCACATCAAAAAATTAGAAAGACACAATAATGTGATCCACCCCAAGGAGAATAGCTTTGAGGTACATGATACTCCCTTAAAACAAACTGCAATCGATAAAATTGGCGGCATTTTGTGCCACATTTGTGAATCAATATTTAAGAACAAGAAAGATTATGACAGTCACTATGCTCAACACAACACTGGAGATGCGGAGATTGTATACACATGTGTGGTATGCAGGAAGAATGTGTCCAGCTACCCTAGCTTCCGCGGACACTGCTACAGCAACCATGTGGCGAAGAACACATTCCAatgtgAATACTGCCTCAAAACATTTTGTAAACAGTCTATTCTCAATAGTCATATTACTTCTGTACATGACTACAATTGCCTGTCCTGCAATGACAAattCTCTACGAAACGAGATTTAGAAACACACAAAACAATGGTCCATGCCAGCTTGAAGGGAAAGGATGAGCCTCCATACGACTGTCTCTTATGTGGCATTGTCATTGAAACAGTAGACGTATGTGAGGGTCATATCGACGATCACTGCGAGATGCTGTACCCATGTCCCATTTGTAAAGAAGTGCTGCCTAACAAGCTGGCAGCTATAAAGCATTTGACGAAACATTTCGAGGAACAGTTACCAAATAACATAACCGCAGAGCCGAGCTTTGGTGAAGACAGTTCAATAGATATCTTAGGAGGCATCCTCTGCCGCCATTGTGACTTGCTGTGCCGTAATAGAGCCGAATTAGTTACGCATTTCAAGGATAAGCATCATGACGAACCATTAGTTTATACATGCAATATTTGCAGCAAACATTTTGAGAAATATGACTTGTTTGGGGGTCACTGCTATGACCACTTCGCCAAAGGAAAATTCCAATGTGATCAATGCAACAGGGCGTTCTGCCGGCTATCCAGGCTAGTGATCCATATGGAGGCATTCCACACAGACTGTTCGCCTGACAAGCCGTATGGGTGCGAGCAATGCGGGCACGGCTACATGACCAAAGGACGACTGCAGGAGCACTTGCGGATCGTGCATGACGAGGAAGCCTCCCGGAGCCGGTGTATTAAACCCGGCTGCTCTGCAATATTCGACAAGCCTCGAGACCTTATACAGCATTTGAAAAACCACAACCCGATGTTAGACAACTGGTGCAAGCAATGCGGCCTACAGTTAACTACACTCTCTTCAGCCGAGAAGCATCTGGACGTTCACCGCCACACACAGTACTCTTGCCCGATATGCAAACGCGCCTACGGCGAGAAATATTTAATGCAGAAACACGTGCCGTCGCATTTCGAGTCCGTGCTTCACATCTGTAAGACCTGCGGGAAGGGGTACAACCTACGGTGCCGTCTCATTCAGCACTTGAAAACGCATACTATTAATCGCAGTCACAAGTGTACATACTGCAGCAAGACGTTCTGTAAACCGCACCAGTTAGAACAGCACATGAACGTCCACACTGGCCTCAAGCCCTACGCTTGCACGCTCTGCCCGAAAAGGTTCGCCAACTACCCAAACTGGAGCAAGCATCTCAACCGCATACACTCTGTGGACAGGGTGAAGATAAAGCAGCTTCATGTGGAGCTAAAAGCGGAGACTACGGAAACGCAGATAATTAAAACATCGCCGACAAAGACTGAGTCTGGCATCGAGTCTGCCGGCTCGGAGATCTCCGACATTAACACTTTCATGGACTCAGACGACAGCTTTGATGACATCTCAGAACGCGGCAGAGACTGGACAGTAGATAACTTTGGTCGCAACGTCTATATGCGCGAGATTGACCCCGTCAACGGACAGAGCATGTCCATCGCCGATACTGTGTGCGCTGCGATCAGCACACTTGATTCTTTGGATGAAAATCTCGATTGGATGACTAGTAAAAACGAAAATACCACATCTACCCTTCAATACCCGAGGCATTCAGAAGTTACTAAAGAAAATATCTCACAACAAAATATGGACGATATGAACGATATTCAGGCAATAGTGGAGGACATTGAAGCTATGAGTGCGGGAATGGAAACTATGAATCACGTGGAAACGACGGATAGTTTTTCCGAGCTAGAAGACGCTAATCCTGAAATGCTACAATATGCAGATATGATGCCATTAGATAATGCCGTGATCAACCCTAGAGATATGGAAACCACCCTGCCCGAGGCATCCTACCAGAGTGGCTGCCTGCCCGAGTACGGGCCCGACTTCACTAGCGACAGCCTCACCAGCGTCGACGACCACATCCTGCCTCACATCGACCCGCTGCTCACTATCAAAGCCGATAACAACGCCAAAATGTACGTCccaaatttaaataactttaatttCGACAGCGTAACCGCTCCAATCGATTATGGAGCCCAAGACGGGTGGGCGCCCCCTATCATAACGAAATCTGGCGCGTTCTCTGAGCCACAGGCTGGCGCCTTCTCTGTGCTACATCCCGGCGCTTTCTCCGAGCCAGAGCTTGGCGCGTTCTCTAAGCTACAGTCTAGCACGTTCTCTGAGCCACAGTCTGCTGAGTTATCTAAGCTACATCCTGGCGCGTTCTCTGAGCCACAGTCTGGTGCGTTCTCTGAGCCACAGTCTGGCGAGTTATCTGAGGTACATCCTGGCGCTTTCTCTGAGCCACATCCTGGCACCTTCTCTGAACCACAGTCTGGCGCGTTCTCTGAGCCACAGTCTGGCGAGTTATCTGAGCTACATCCTGGCGCTTTCTCTGAGCCACATCCTGGCGCTTTCTCTGAGCCACAGCCCGCCGCGTTCTCTGAGCCACAGTCTGGCGAGTTATCTGAGCTACATCCTGGCGCTTTTTCTGAGCTACAGCCTGGCGCGTTCTCTGAGCCACATTCGGCGACACACTGCATTAATTACATCCGTTAA
Protein Sequence: MASSIASPINLGDGDSLEEHGFTKQSIIDKTGGIFCHICNSIFGNKKDFDGHYAWHNTGGTDILYTCVVCKLQLNNYLRFNKHCYLHHVMKNKIQCKHCSIKFMKQSVLDSHVSAVHNYKCLSCNETFTHIKKLERHNNVIHPKENSFEVHDTPLKQTAIDKIGGILCHICESIFKNKKDYDSHYAQHNTGDAEIVYTCVVCRKNVSSYPSFRGHCYSNHVAKNTFQCEYCLKTFCKQSILNSHITSVHDYNCLSCNDKFSTKRDLETHKTMVHASLKGKDEPPYDCLLCGIVIETVDVCEGHIDDHCEMLYPCPICKEVLPNKLAAIKHLTKHFEEQLPNNITAEPSFGEDSSIDILGGILCRHCDLLCRNRAELVTHFKDKHHDEPLVYTCNICSKHFEKYDLFGGHCYDHFAKGKFQCDQCNRAFCRLSRLVIHMEAFHTDCSPDKPYGCEQCGHGYMTKGRLQEHLRIVHDEEASRSRCIKPGCSAIFDKPRDLIQHLKNHNPMLDNWCKQCGLQLTTLSSAEKHLDVHRHTQYSCPICKRAYGEKYLMQKHVPSHFESVLHICKTCGKGYNLRCRLIQHLKTHTINRSHKCTYCSKTFCKPHQLEQHMNVHTGLKPYACTLCPKRFANYPNWSKHLNRIHSVDRVKIKQLHVELKAETTETQIIKTSPTKTESGIESAGSEISDINTFMDSDDSFDDISERGRDWTVDNFGRNVYMREIDPVNGQSMSIADTVCAAISTLDSLDENLDWMTSKNENTTSTLQYPRHSEVTKENISQQNMDDMNDIQAIVEDIEAMSAGMETMNHVETTDSFSELEDANPEMLQYADMMPLDNAVINPRDMETTLPEASYQSGCLPEYGPDFTSDSLTSVDDHILPHIDPLLTIKADNNAKMYVPNLNNFNFDSVTAPIDYGAQDGWAPPIITKSGAFSEPQAGAFSVLHPGAFSEPELGAFSKLQSSTFSEPQSAELSKLHPGAFSEPQSGAFSEPQSGELSEVHPGAFSEPHPGTFSEPQSGAFSEPQSGELSELHPGAFSEPHPGAFSEPQPAAFSEPQSGELSELHPGAFSELQPGAFSEPHSATHCINYIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00034078;
90% Identity: -
80% Identity: -