Basic Information

Insect: Agriopis leucophaearia
Gene Symbol: -
Assembly: GCA_949125355.1
Location: OX421288.1:2892276-2894453[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00028 0.02 15.9 1.2 1 23 122 144 122 144 0.96

2 15 0.45 33 5.9 0.7 2 23 149 170 148 170 0.93

3 15 0.0035 0.25 12.5 0.2 3 23 212 232 210 232 0.97

4 15 5.2 3.8e+02 2.5 0.1 2 23 259 281 258 281 0.92

5 15 3.4 2.5e+02 3.1 1.8 1 23 302 326 302 326 0.93

6 15 0.09 6.6 8.0 6.0 2 23 331 353 329 353 0.90

7 15 0.034 2.5 9.4 1.0 2 22 452 472 451 474 0.89

8 15 0.038 2.8 9.2 2.7 1 23 495 517 495 517 0.97

9 15 0.024 1.7 9.9 4.7 2 20 522 540 521 543 0.90

10 15 0.015 1.1 10.5 2.8 1 23 550 573 550 573 0.97

11 15 0.0067 0.49 11.6 3.2 1 23 578 601 578 601 0.93

12 15 0.01 0.75 11.0 0.3 1 23 607 630 607 630 0.96

13 15 0.00039 0.029 15.5 5.8 1 23 636 658 636 658 0.97

14 15 0.00011 0.0081 17.2 0.0 1 23 664 686 664 686 0.99

15 15 0.00013 0.0097 17.0 5.3 1 23 692 714 692 715 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00028	0.02	15.9	1.2	1	23	122	144	122	144	0.96
2	15	0.45	33	5.9	0.7	2	23	149	170	148	170	0.93
3	15	0.0035	0.25	12.5	0.2	3	23	212	232	210	232	0.97
4	15	5.2	3.8e+02	2.5	0.1	2	23	259	281	258	281	0.92
5	15	3.4	2.5e+02	3.1	1.8	1	23	302	326	302	326	0.93
6	15	0.09	6.6	8.0	6.0	2	23	331	353	329	353	0.90
7	15	0.034	2.5	9.4	1.0	2	22	452	472	451	474	0.89
8	15	0.038	2.8	9.2	2.7	1	23	495	517	495	517	0.97
9	15	0.024	1.7	9.9	4.7	2	20	522	540	521	543	0.90
10	15	0.015	1.1	10.5	2.8	1	23	550	573	550	573	0.97
11	15	0.0067	0.49	11.6	3.2	1	23	578	601	578	601	0.93
12	15	0.01	0.75	11.0	0.3	1	23	607	630	607	630	0.96
13	15	0.00039	0.029	15.5	5.8	1	23	636	658	636	658	0.97
14	15	0.00011	0.0081	17.2	0.0	1	23	664	686	664	686	0.99
15	15	0.00013	0.0097	17.0	5.3	1	23	692	714	692	715	0.96

Sequence Information

Coding Sequence: ATGGGAGACTATCGTGATGCGCGTGACAATGCGACCATAATCCTAACATGTTCCAATGTATGTCCATTCAAATGGCACCGAAACGTGTTTGGGTGTCCGTGCTGTAGCTACACGTCGCCTGTTTTCACCTGCCTCAAAAACCACATGGGGGAGCATCcgctcaaatcagacaaactcGATATACTTAAGAACTCCCGACCGAGCGATACAGTGAAAACGGACGTTGCTGATCTCAGATGCGACTTATGCCAGCAAAAAATTGACGATATACCAAAACTAATGGACCACCTTCACGAAATCCACAATAAACCAATCATAAAAAATTACGATTCGGGCATCGTCCCTTACTTGTTGGATAATGGATTCACTTGCGCTTATTGCAACGAATCATTCGAACGGTTCGTAACATTGAACACGCATATGTTTGACCACTTCCCGAAGTGCGCCTGCGCTGAATGCGGGCTACTTTTTTCCGCGGATAGACTTAGAAAACACGTTCTTAGAACCCACGAAAAATCTCGTGAAATAAAGTTCAAGCAAAAATCGGGCGAATATGATGCTCGACACAATGCAACTATCATTTTGGAATGTTCCAACGTATGTCCTTTCAAATGGCGTCGAAACGTGTTTGGTTGTGCGTACTGCCCTTATACTTCACCAAATTTTACCAATTTGAAAACCCATATGGATGTCCACCCGACAAAGGCAGAGAGAATCGAAATACTTCGCAATTCACGTCCTACTGCCGTCGTCAAAACCGATGTGACCAATCTAAAATGTGTCTTGTGCCAACTAAATATCGAAAATATTGCATCATTAATGTCTCACCTTAAGGACGAGCATGATAAACATATCATAAAGAAATATGGTTCAGGTATCATACCTTACTTATTAGaagacagatttaaatgcgctTACGGTTCCTGTGGCGAATCTTTCGATTgctttataaaattaaacactcaCGTGAAATCGCATAACATTAAGTGTACGTGCGCACAATGTGGGCAATTTTTCTGTAGTAGTGAAAGGCTGAGAAATCATACAGTAAGGAAGCACGGGCAGCGACGGGCGACTAAATTGCGACCTAAATTCGACTCCAAATCCAAAGCAGGTTTTAGATGTGAATCCGGCTTTTATGATGATGCGAGGCATAACGCCGTTATCATCGTCGAAAGCTCTAACGTTTGTCTCTTCAAGTGGTACAGAAATGTATTCGGATGTGCGAGCTGTGAATATGTATCAGCTGACTTCGGTCCGATCAGGAGTCACGTTCATAACAAAAGGGTCGAAGGCCTTCACATGCGGTACACTCGTCCCACTGACATACTGAAGGCAGAGGTTACAGATCTAAAGTGCAAGCTTTGCGATCAAGCTTTTCATGACTTGAAAACGTTGCTTTACCATTTAGGCGAGTCACATAATAAGCCAATCAAAAAAGAATTTGGTCCTGGACTCATTCCTTTCCTGTTGAACGATAGCTACTCGTGCGCTGACTGTGGACTTCAATTCGATCGCTTCACTAAACTCAACTGCCACATGAATCAGCACTTTCCTAATTGCATTTGTTCTTATTGTGGACAAGCTTTCACGAACGCGAATAGATTGAAGCACCACACTTGGCACCACAAACAGGAAAAGGTGCAATACAAATGCACCCCCTGCAAAGTGATATTTACAACAAGATACCAGAAACAAAAACATATGCTGTCTAAGCATGGTAAGCTTTCCCACAAATGCCCGTACTGTAACGAGATGTTTAAATCGTACTATCTTAGATTGCAGCATTTGAATGACAAGCACGGCAAGAAGATACAGTATCCTTGCAACTTGTGCTCGGAAATATTCAAAACAGCTTCGAGACGAGCGCAGCATGTACGGTATGTTCATATAAAGAGCACACCCCATTCCTGTTCTATTTGCAACTACTCGTGCATGACCGCAGCTCACTTAAAAAGGCATATGATAAGACATGGTGGAGAGAGGAAGTACAAATGCGAAGTTTGTATGAAGGCTTATCCGAGAAGCGGGGCTTTAGCTCTGCACATGCGAATACACAATAATGATAAACGATTCGTTTGTACGCAATGCAAAGCCGCATTTGTGCAAAAATGTAGCTTGAAAAGCCACATGAAGACACATCATCCGTATGATAATGAAGAGCCGTCTTCGTTTTAA
Protein Sequence: MGDYRDARDNATIILTCSNVCPFKWHRNVFGCPCCSYTSPVFTCLKNHMGEHPLKSDKLDILKNSRPSDTVKTDVADLRCDLCQQKIDDIPKLMDHLHEIHNKPIIKNYDSGIVPYLLDNGFTCAYCNESFERFVTLNTHMFDHFPKCACAECGLLFSADRLRKHVLRTHEKSREIKFKQKSGEYDARHNATIILECSNVCPFKWRRNVFGCAYCPYTSPNFTNLKTHMDVHPTKAERIEILRNSRPTAVVKTDVTNLKCVLCQLNIENIASLMSHLKDEHDKHIIKKYGSGIIPYLLEDRFKCAYGSCGESFDCFIKLNTHVKSHNIKCTCAQCGQFFCSSERLRNHTVRKHGQRRATKLRPKFDSKSKAGFRCESGFYDDARHNAVIIVESSNVCLFKWYRNVFGCASCEYVSADFGPIRSHVHNKRVEGLHMRYTRPTDILKAEVTDLKCKLCDQAFHDLKTLLYHLGESHNKPIKKEFGPGLIPFLLNDSYSCADCGLQFDRFTKLNCHMNQHFPNCICSYCGQAFTNANRLKHHTWHHKQEKVQYKCTPCKVIFTTRYQKQKHMLSKHGKLSHKCPYCNEMFKSYYLRLQHLNDKHGKKIQYPCNLCSEIFKTASRRAQHVRYVHIKSTPHSCSICNYSCMTAAHLKRHMIRHGGERKYKCEVCMKAYPRSGALALHMRIHNNDKRFVCTQCKAAFVQKCSLKSHMKTHHPYDNEEPSSF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -