Aleu013839.1
Basic Information
- Insect
- Agriopis leucophaearia
- Gene Symbol
- -
- Assembly
- GCA_949125355.1
- Location
- OX421274.1:15793335-15804966[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00033 0.024 15.7 2.8 1 23 497 520 497 520 0.96 2 10 0.0061 0.45 11.7 1.5 3 19 533 549 531 553 0.90 3 10 3.3e-06 0.00024 22.0 2.6 2 23 559 580 558 580 0.97 4 10 0.00013 0.0096 17.0 1.0 1 23 584 606 584 606 0.98 5 10 0.00015 0.011 16.8 0.5 2 23 824 845 823 845 0.96 6 10 0.14 10 7.5 0.4 3 23 866 887 864 887 0.94 7 10 9.4e-05 0.0069 17.4 3.1 1 23 893 915 893 915 0.97 8 10 0.0042 0.31 12.2 1.3 2 23 921 942 920 942 0.95 9 10 0.001 0.076 14.2 5.7 2 23 949 971 948 971 0.96 10 10 0.035 2.6 9.3 0.8 3 23 1011 1032 1010 1032 0.91
Sequence Information
- Coding Sequence
- ATGACCCAGGAAACTATCTTCGTGGGCGGTCGGGACGCCGTCCCAGTCTTATTTATCCCGAGACAATGTACAAAACTTGAAACGAACTATGATATGTCCGCCGACGTTTACATTGAACTTACCATTACTTCAGCAGACACAGATGGTAACGAAAGTTGCATTTATTCGGGCTTTTGCAATGTAAAAATTTGTGATGCTTGTCATATCAACATTTATCCTACTGAAACGGTTGACGTTGAACAAGATAAATCGTCTAATTCGTCAATAGACTGTGAGGATATAAATCATATGCCGGTCATCTTGTCCGACGCCAGTACATTTCCAACACAAGCTTATAACCAGTCTCAAGTGTGGATAGATCCTTCTAGAAGCCCGTACGTATACAACCACTATGACACAGCACAACAGGCTTACTCCATCTTTGAGAACACTGGTTGCATCACTGTACAGCAACACAATACATACTTAACTCAGAACGTCTACAACTATGACCGCCAATCTCAGAAAAATGATTTTGAGCAACATAAGTTCAAGAAAGCACCTCGACAAGCTCAACAACTGTTTCAAGAGATCTGTGAAGACGAAGAGTCAGAGAGTGAAGTGTTCTACAACTATGATCGCCAGTCTCAGACAAATAATAATGAGCAAAATAAGTTCAAGAAGGCACCTACAGCTCGACAAGTTTACCCAGAGACCTGTGAAGATGAAGAGTCAGAGAGTGAAGTGTTCTACAACTATGATCGCCAGTCTCAGACAAATGATAATGAGCAAAATAAGTTTAAGAAGGCACCTACAGCTCGACAAGTTTACCCAGAGACCTGTGAAGATGAAGAGTCAGAGAGTGAAGTGTTCTACAACTATGATCGCCAGTCTCAGACAAATGATAATGAGCAAAATAAGTTCAAGAAGGCACCTACAGCTCGACAAGTTTCCCCAGAGACCTGTGAAGATGAAGAGTCAGAGAGTGAAGTGACCTACAACTATGATCGCCAGTCTCAGACAAATGATAATGAGCAAAATAAGTTCAAGAAGGCACCTATAGCTCGACAAGTTTCCCCAGAGACTTGTGAAGATGAAGAGTCAGAGAGTGAAGTGTTCTACAACTATGATCGCCAGTCTCAGACAAATGATAATGAGCAGAATAAGTTGAAGAAGGCACCTACAGCTCGACAAGTTTACCCAGAGATCTGTGAAGATGAAGAGTCGGAGAGTGAAGTGTTCTTATCTCAACTGTCTCTAAGAAATAAGAAGACAAATAAAGGTGACATTGAAGGGAAGAATAATGCATTGAAGCagttgATGTCAACGGATATCCAATCCACATCCAAGCAGAGGAAGACAATACTGTTCCTTGGGGAAGACTCCACTTCGGGACAGACCATCCAGAATATACAGTTTACGGACCCTATGGTCACATGCTCGGCTATAGAGGTGGACCATGAAGTGGTGATTGAGGACACCGCGCCCCCATCAcccaatagaaaaaaataccaatGCGACAAATGCAAGCAAATCTTCGAACAAATCTCAGATTTCCGTCATCACATGAAGGGGAACCATACTAACCACAAAGTCATTAAGAACAGAGATTTGGCGTGTTCCGAATGTGGCAAGAAATTTTCAAACTATGACAAGTATGAAGTACACTGCTTAGGACATGGAAACCCAGATCTAGAATGTTCTAAGTGCCACAAAGTGTACGCTTCCAAAAGTAGCCTAAAAACTCACATGAAGATTCATGACCGAAAATTCCCTTGTCAATATTGTTCTAAAACGTATGCCACTTCTGAACCTTACAAGAAACACTTGAAGGTGCATTCTAAGTTCGTATGCCAGTATGATGGCTGCTTATTTTTGACCAACACGGCGTCGAAGCGCGATGATCACTATGATGATCATATTGAAAATTTGTATAGTATTGATCCCGATCATAACAATAATGATTATCTCGATATTGAAGAgcattttgattattttgacCTAAGTCATAAAGATCAATGTAATAAGGGTCATCATGATCAAGACAATGATGGTCATAATGATCAAGGTCACGATGGACGTGATGATCAAGGTAATGATGATCACACTGATGAAATTGACGGAAATCTTTATGTTAGCCCGATACAGTCAACTTACACTGAAATTCCTGACTCTTTTATGGATAATCTCGATGAAGGATTTCAACTGATAACTAAAGAATGTGAACTAAAAACTGCAATGTCAGGAGAACCGGAGAAAAGTAAAAATGAACTGAAGAAGAATGATAATGGAGGAGTGGGAAGGAATAAAAAAGGAGAACTGGAGAGAAATAAAAATGCAGAAGTAGATAAGAATGCTATGTCTGAAGTGGTTGGCAATGATGATAAAAACGAGCGTGCAAAAGCTGATTCAGTGATAGCAAAGGTTATGTCTAGTAAAATATTCCTGGCAAATACTAAAGCGGCCAAGAAACACGCAAGAAACAATAAGACTTGCCAAGTGTGCTCGAAGTCATTCGACCGCGTGGGAGACCTCAAGCGACATCTAATTGAGCACATCGTCAAATGCACCCTGGCTAAGGCAGTTAGCAGCAAGCAGGGCACTCTCAAAATTAACTGCGAGATTTGCCAAAAGGAAACGTTCAACACAATCGACAAATACAAAGCCCATCTCCGCGAACACGCCAAAGTGACTCTTTACAAATGCATCTTCTGCGACAAATCGTTCAGCGATTCCAGCAACTTCTCCAAACACAAGAAAATCCACGGCGCTTCTTACTTGCAATGCGATTTGTGCCACAGAAGATTCAAGTCTAAAATAATGATCGCAAAACATATCGAGCTACACACCAAAAATAAGCCCCTGAAATGCAACTTATGCCATCGTGTCTTCCACTTCCAGTCCATGCTGAATAAGCATTTAAAAAGCATGCACAAAAAACCTACGGCTTCGAAATTCCATTGCAGATTTTGCTGTGATGGATTTACATCTTTAAAAGATAAGTGGGATCATGAATGGTTTGTCCATAACATTAGGAAGACAATTGTCGATTGTCTGGTCTGCAACGCCAAGTTTAGGAAGTATACGGAGTTGAAGAGACATTTCCAAGATATACATAAAATGATAATTCCAACACAGAAGAAGATTCTGGAAAAGATGTCTACATCAACAGATTTTTGCATCAAAAAGGCTAGTTACTGA
- Protein Sequence
- MTQETIFVGGRDAVPVLFIPRQCTKLETNYDMSADVYIELTITSADTDGNESCIYSGFCNVKICDACHINIYPTETVDVEQDKSSNSSIDCEDINHMPVILSDASTFPTQAYNQSQVWIDPSRSPYVYNHYDTAQQAYSIFENTGCITVQQHNTYLTQNVYNYDRQSQKNDFEQHKFKKAPRQAQQLFQEICEDEESESEVFYNYDRQSQTNNNEQNKFKKAPTARQVYPETCEDEESESEVFYNYDRQSQTNDNEQNKFKKAPTARQVYPETCEDEESESEVFYNYDRQSQTNDNEQNKFKKAPTARQVSPETCEDEESESEVTYNYDRQSQTNDNEQNKFKKAPIARQVSPETCEDEESESEVFYNYDRQSQTNDNEQNKLKKAPTARQVYPEICEDEESESEVFLSQLSLRNKKTNKGDIEGKNNALKQLMSTDIQSTSKQRKTILFLGEDSTSGQTIQNIQFTDPMVTCSAIEVDHEVVIEDTAPPSPNRKKYQCDKCKQIFEQISDFRHHMKGNHTNHKVIKNRDLACSECGKKFSNYDKYEVHCLGHGNPDLECSKCHKVYASKSSLKTHMKIHDRKFPCQYCSKTYATSEPYKKHLKVHSKFVCQYDGCLFLTNTASKRDDHYDDHIENLYSIDPDHNNNDYLDIEEHFDYFDLSHKDQCNKGHHDQDNDGHNDQGHDGRDDQGNDDHTDEIDGNLYVSPIQSTYTEIPDSFMDNLDEGFQLITKECELKTAMSGEPEKSKNELKKNDNGGVGRNKKGELERNKNAEVDKNAMSEVVGNDDKNERAKADSVIAKVMSSKIFLANTKAAKKHARNNKTCQVCSKSFDRVGDLKRHLIEHIVKCTLAKAVSSKQGTLKINCEICQKETFNTIDKYKAHLREHAKVTLYKCIFCDKSFSDSSNFSKHKKIHGASYLQCDLCHRRFKSKIMIAKHIELHTKNKPLKCNLCHRVFHFQSMLNKHLKSMHKKPTASKFHCRFCCDGFTSLKDKWDHEWFVHNIRKTIVDCLVCNAKFRKYTELKRHFQDIHKMIIPTQKKILEKMSTSTDFCIKKASY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -