Aleu024177.1
Basic Information
- Insect
- Agriopis leucophaearia
- Gene Symbol
- -
- Assembly
- GCA_949125355.1
- Location
- OX421288.1:3615714-3618074[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.3 98 4.4 0.9 2 17 42 57 41 64 0.83 2 14 1.5 1.1e+02 4.2 0.6 2 23 85 107 84 107 0.92 3 14 4e-06 0.00029 21.8 1.8 1 23 112 135 112 135 0.96 4 14 6e-05 0.0044 18.0 0.7 1 23 139 162 139 162 0.95 5 14 0.034 2.5 9.4 1.6 2 23 165 187 164 187 0.95 6 14 0.01 0.73 11.1 2.2 1 23 473 496 473 496 0.93 7 14 0.24 18 6.7 0.1 3 23 527 548 525 548 0.95 8 14 0.00085 0.062 14.4 0.5 1 23 569 592 569 592 0.96 9 14 0.48 35 5.8 0.4 3 20 600 617 599 619 0.92 10 14 1.9e-05 0.0014 19.6 0.9 1 23 627 650 627 650 0.93 11 14 0.051 3.8 8.8 1.9 1 23 655 678 655 678 0.96 12 14 0.00034 0.025 15.7 2.4 1 23 682 705 682 705 0.98 13 14 0.00015 0.011 16.8 1.2 2 23 712 733 712 733 0.96 14 14 7.2e-06 0.00053 20.9 0.8 1 23 739 761 739 761 0.98
Sequence Information
- Coding Sequence
- ATGAAAGACCGACAGCAGCTGATAGAACACAATCAGACTCACCTACCGTGTAGTACCAAACATAATTCGTTGAAAATTCTGTACGGAACAGACTTCGAAATCAAAGTTGACGTGTCTGACGTACGATGTAAAATTTGCTTTGAACAGTTCAACAACGTTTACAATTTAGGGTTCCATTTGGCTCATAAACACAAACTCCCTTATGACCTGGGCACAGCTGTTGGTTTCGTGCCGTTTAGACTGATCgacttaaaatgtataatatgtttTAAACAGTTGAGATCATTAAGAGGTCTTATTCAACATACGAACAAGGATCATCCCGTCAATTACTTCGAATGCGAGGACTGCGGCAGAAAATTTAGACGAAAGCATGACTTGATGGGTCACATAAATCAGACACACAAAGAAGAGTTTAAATGTCCGAAATGTCCGGAGACTTTCAAAACGAAAGCAGAATATGGAAAGCACAAGAATGAAGGTCACGTCTCCCAATGCAACGTgtgtttcaaaatattttcatcgCATATTTTGCGATTAAATCATATGAAGGGAGAGCATGATATAACCCTGGGTGGCACTTGTGGATTTTGCCACAAGAAAATGAACTCACGGTTCGCATTTCTTGACCACGCTGGTAAATGCTCTGTTGGAGGACCTGTAAACATTGAAGTGTCTTTGTTACCATTCAAGACAGACTCAGATACGACAGATCCAATGTCTTGGAACACTTCAGTGAAGACAGACGCAGACAATAGAGATCCAATGTCTTGGAACACTTCAGTGAAGACAGACGCAGACAATAGAGATCCAATGTCTTGGAACACTTCAGTGAAGACAGACGCAGTCAATAGAGATCCAATGTCTTGGAACACTTCAGTGAAGACAGACGCAGACAATAGAGATCCAATGTCTTGGAACACTTCAATGAAGACAGACTCAGACGTGACAGATCCAATATCTTGGAACCCTTTAGTAAAGACAGATACAGATACGTCAGGTCCAGTTTCGTGGTCCACCCCAGTAAAGGCAGACACATACACGTCAGGTCCAGTTGCGTGGTCCAATCCAGTAGAGGCAGACGCAGATACGACAGGTCCAGTTTCGTGGTTCACTCCAGTAAAGGCAGACACAGACATGACAAATCCATTGTGTTTGGTCGCTTCAGTAAAGACAGACAAGGATATGACAGGCCCGGTGTCTTGGAATATTCCAATGAAAACAGACGCAGATAATAAAGCAGGTCTAGTGCCTTGGACTTCAGTAAAGAAACATAGAGATATGAAATCTCCAATGGACCCAGAGACGGTCACAGCAATGGTTGCAATGCGAGAGGCTAAGAGGCTTGCCAGGAATAATATTGCCTATGTATTCAACAACACCACCATTGTTCCATTCAAACGCTACCACAATAGGTTCAGATGCTTTTATTGTCCAGTCGAGTTCAACAGCTGTAATGATCTCAGGAACCATTCCATGGAAGAACACCCAATTTGTGATGTTAaactaaaatgtatgaaattgaGCGGCTTGGGCTATCAGTACATGGGGATCAAGGTCGACTCTTCAATATTGGCGTGCAAAATATGTAACGACCAATACGAAGACTTCAAAAGCTTGCTGGCTCATTTAGAAACTGAACATGGGGCTAAACTTGGCAACTGCGCCGACAAATTGCAACCTTTTAAACTGATGGATGACCAGTACCCGTGTCCGCAGTGCGGTGAAGTATTCTCGCATTTCGGAAGTACTCTGATCCACTACAACAAAGAACATAATACGGAGAATAGAGTTCTGTGCGTGACTTGCGGTGAATCGTTCCATGGTGTAACGTCCCTTCAGACGCATAGAACACGCTGCAACATTGCGCCAGACCGCTTCAGATGTACCAGATGCGACGTAGGATTCTATAATAAGAGCCAACTGACACGGCATATGGGAAACGTCCACAAAAAGAAAGTCTTCAAATGTCCCCATTGCACTGAATTGTTTGCATCTGAACATGCTAAAATGGTGCACATTACTAAAGAACATACAGGCGGTTTCCAATGCACCCATTGCGAAGCATCTTTCATATTTCGCTCACGGTTGATCCAACACATTAAAAGGTTGCACCTTCTAGAGAAAAACGAAAAGTGTCCATATTgcgaaaaaatgttttttgaccAACGCAGACTTAAAAATCACATGGTCCTCCACACCGGGGAACGAGCTTTCAGTTGTGATTACTGCGACAAGACATTTTCTTGGAAAAAGAATTTGATCAGCCACATAAACGTGCATTTAAAGAATGCAGGTCACGATAGAAAAAGAAAGGAGAGGaaacaaacaaatcaaacgGATCTGAGAGTGGTAGTGTAA
- Protein Sequence
- MKDRQQLIEHNQTHLPCSTKHNSLKILYGTDFEIKVDVSDVRCKICFEQFNNVYNLGFHLAHKHKLPYDLGTAVGFVPFRLIDLKCIICFKQLRSLRGLIQHTNKDHPVNYFECEDCGRKFRRKHDLMGHINQTHKEEFKCPKCPETFKTKAEYGKHKNEGHVSQCNVCFKIFSSHILRLNHMKGEHDITLGGTCGFCHKKMNSRFAFLDHAGKCSVGGPVNIEVSLLPFKTDSDTTDPMSWNTSVKTDADNRDPMSWNTSVKTDADNRDPMSWNTSVKTDAVNRDPMSWNTSVKTDADNRDPMSWNTSMKTDSDVTDPISWNPLVKTDTDTSGPVSWSTPVKADTYTSGPVAWSNPVEADADTTGPVSWFTPVKADTDMTNPLCLVASVKTDKDMTGPVSWNIPMKTDADNKAGLVPWTSVKKHRDMKSPMDPETVTAMVAMREAKRLARNNIAYVFNNTTIVPFKRYHNRFRCFYCPVEFNSCNDLRNHSMEEHPICDVKLKCMKLSGLGYQYMGIKVDSSILACKICNDQYEDFKSLLAHLETEHGAKLGNCADKLQPFKLMDDQYPCPQCGEVFSHFGSTLIHYNKEHNTENRVLCVTCGESFHGVTSLQTHRTRCNIAPDRFRCTRCDVGFYNKSQLTRHMGNVHKKKVFKCPHCTELFASEHAKMVHITKEHTGGFQCTHCEASFIFRSRLIQHIKRLHLLEKNEKCPYCEKMFFDQRRLKNHMVLHTGERAFSCDYCDKTFSWKKNLISHINVHLKNAGHDRKRKERKQTNQTDLRVVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00034063;
- 90% Identity
- -
- 80% Identity
- -