Aleu024100.1
Basic Information
- Insect
- Agriopis leucophaearia
- Gene Symbol
- -
- Assembly
- GCA_949125355.1
- Location
- OX421288.1:2927661-2931834[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.97 71 4.8 5.6 1 23 60 82 60 82 0.97 2 17 0.069 5.1 8.4 3.2 3 23 88 109 87 109 0.93 3 17 0.0015 0.11 13.7 0.9 1 23 346 368 346 368 0.97 4 17 0.0028 0.2 12.8 0.8 3 23 374 395 372 395 0.94 5 17 2.3e-05 0.0017 19.4 1.7 1 23 402 425 402 425 0.97 6 17 0.0085 0.62 11.3 5.5 1 23 430 453 430 453 0.95 7 17 1.2 85 4.6 3.6 1 23 459 482 459 482 0.96 8 17 0.00019 0.014 16.4 0.5 1 23 488 510 488 510 0.97 9 17 5.6 4.1e+02 2.4 0.0 2 23 606 628 605 628 0.90 10 17 0.00038 0.028 15.5 0.4 2 23 651 672 650 672 0.96 11 17 3.2e-05 0.0024 18.9 0.3 3 23 678 699 676 699 0.96 12 17 1.1 80 4.6 2.5 1 23 707 730 707 730 0.85 13 17 8.2e-05 0.006 17.6 3.9 1 23 735 758 735 758 0.97 14 17 2.2 1.6e+02 3.7 2.7 1 23 764 787 764 787 0.95 15 17 0.0016 0.12 13.5 0.5 1 23 793 815 793 815 0.96 16 17 0.00028 0.02 16.0 0.7 1 23 821 843 821 843 0.99 17 17 0.00013 0.0098 16.9 6.1 1 23 849 871 849 872 0.96
Sequence Information
- Coding Sequence
- ATGCCGTACGGCATTATTTTAAAAGCTGACATCACCGATCTTCAATGCAAGATCTGTCTTGAAAGCCAGAGCGATATTCCATCTCTCGCCGATCACTTGATCGCTATTCATAAGCAACCTATCAAAAAACAATATGGGCTCGGAGTTATGTCATTCCGACTTCTGAATCAAAAAACTTTCAGATGTGTTCACTGTGACCGCATCTGCGAGACGTTTGGAAGTCTTAATTGTCATATGAATGGTCACTATCCCAATGTTGCGTGTCCCAAATGTAACAAGTGTTTTGCAGACTATCAGAGGATGAAAGGTCATCAGTTCAAAAGACATAAGTTAGAAAAGAAAACAGATGAACGTGACAATGCACTCATCATCCTAAAGCACTCAAACATGTGCCCTTTTAAATACCGGTTTGCTTTTCTCTGCTTTTACTGTGACTTCGCTGCTCCTGAAATCGGTGCAATAAGAGAGCATATAGCAGAACATACAAATATGATACGAAAAAATAAACTTCACAGTAACATATTTGTAAAGGCTGACGTTACAAATCTAAGATGTGAGCTTTGCTTTGAAAACATGGGAGATTTATCATCACTCGTGGACCACCTGATCAACATTCATGACCAACCCATTAAGAAAAAATGTGGTACAGGACCCGTCACAGTTAAATGGAGACCCGAACGCAAGTACCAAGACGAGAGACACAATGCGGCAATCATTTTAGAATGTTCCAATGTTTGTCCATTTAAATGGAATCGAAGTACATTCTGTTGCTCGTACTGTACGCTAACTTCTGGCGATTTTGGCCCTATCAGAGAACATACTATTCAAAACCACCATCCTAACAGGATGGAAGCCCTTCGTGGATGGCTAGGCGCCACGATCAAAGCCGATGTCTCAGATTTAAAATGCGAACTCTGTCTCCAAAATATTAAAGACGTTACAACATTATTCGATCACTTAATAGAAGTTCACAACAAGCCTCTCGATATAAAATACGGCCCTGGCATCGTCCCGTTTCTCCTGAATGGAGATAAATTCAGATGTGCCACGTGTGATATTTCTTTTGACCTAttctttaatttaaacaaacactTGAATGAACACTCCCCCAATAGCATATGCCCGTCGTGCGGCAAGTTGTTTTCTCAAGTCTCTAGGTTGAAATCGCACATACATTACGCACACGAAAAATCACAGCAGCGGTACACGTGCTCGAAATGCGGTGAAACATTCACCAGCAAACCGGACAAAAATACTCATATGAGATTGAAACACGAGTTCATGAAGCACAAATGTCCACACTGCAACGAATCGTTCAAATCGTACAATGGCAGAATGAAGCACCTAAAGGAATTTCACGATAAGAAAATAGAGTACCGTTGCAACATGTGTTCGTCTTCGTTTTTGCTGAGCAGCCAGAGAACGAAGCATATGCAACATGTTCACATAAAGAATAAACGGTTTGCCTGCACGGTATGTCCGTTCCGCTCCGTCACAAGTTCCTCGTTGAGGAATCACATGATAAAGCACGACGGTGAAAGAAAGTACCAATGTCAGGTGTGGCCCGTCACCTTCACAGTTAAATGGAGACCCGTACGCGAGTACCACGACGAGAGACACAATGCGGCAATCATTTTAGAATGTTCCAATGTTTGTCCATTTAAATGGAATCGTAGTGTATTCTGTTGCTCGTACTGTACGCTAACTTCCGGCGATTTTGGCCCTATCAGAGAACATATTATAGATCATCCAAATAGGATAGAAGTCCTTCGTGGAATGCGATCCGAGGCGATAAAAGCCGATGTCAGCAATTTAAGATGCGAGCTCTGTCTCCAAAACATAAAAGACATATCATCATTAGTCGATCACTTGATAGATGTGCACGACAAGCCTATTGACAAAAAATACGGACCTGGCATCGTTCCTTTTCTTCTCAACGGAGATGTAATCAGATGCGCCATCTGTGATCTATCATTCGATTTTTTCACCAATCTAAATAGGCACTTGAATGAACACTTCCCTAATAGCATATGTCCGTCATGCGGTAAATCTTTTGCTCAAGAGTCTAGACTGAAATCGCATATACTTCGTTCACACGAAACAGGGAGACGGCTACAACACATGTGCAGGAGATGCGGCGAAACCTTCACGAGCATACTCGATAAAGATAAACATATGAGTTTTAAACACGACATCATGAAATACAAATGTCCATATTGCAACGAATCTTTCAAATCGTACACGCACAGAGTGAAGCATATGAAAGAACTACACGATAAGAAAATAGAGTTCCGTTGCAGCATGTGTTCCGCATCTTTTTTGCTGTGCAGCTTAAGGACGAAGCATATTCGACAGGTTCATATTAAGGATAAAAGGTTTGCATGCTCGGTGTGTACGTCCCACTTCGTCACCGCTGCAGCGTTGAGGAATCATATGGTGAAACACGGGGGCGAAAGAAAATACCAGTGTCAAGTGTGTATGAAAGCGTATGCGAGGATGAAAACATTAAAGGAACACATGCGAATTCATAACAACGATAGAAGATTCGTTTGTGAGCACTGCGATAGTGCGTTTGTGCAAAAGTGCAGTTTAAAAAGTCATATAAGAACGCACCATCTCAAAGGAGACGTGCTGCCACCGAGAAAGCTTTGA
- Protein Sequence
- MPYGIILKADITDLQCKICLESQSDIPSLADHLIAIHKQPIKKQYGLGVMSFRLLNQKTFRCVHCDRICETFGSLNCHMNGHYPNVACPKCNKCFADYQRMKGHQFKRHKLEKKTDERDNALIILKHSNMCPFKYRFAFLCFYCDFAAPEIGAIREHIAEHTNMIRKNKLHSNIFVKADVTNLRCELCFENMGDLSSLVDHLINIHDQPIKKKCGTGPVTVKWRPERKYQDERHNAAIILECSNVCPFKWNRSTFCCSYCTLTSGDFGPIREHTIQNHHPNRMEALRGWLGATIKADVSDLKCELCLQNIKDVTTLFDHLIEVHNKPLDIKYGPGIVPFLLNGDKFRCATCDISFDLFFNLNKHLNEHSPNSICPSCGKLFSQVSRLKSHIHYAHEKSQQRYTCSKCGETFTSKPDKNTHMRLKHEFMKHKCPHCNESFKSYNGRMKHLKEFHDKKIEYRCNMCSSSFLLSSQRTKHMQHVHIKNKRFACTVCPFRSVTSSSLRNHMIKHDGERKYQCQVWPVTFTVKWRPVREYHDERHNAAIILECSNVCPFKWNRSVFCCSYCTLTSGDFGPIREHIIDHPNRIEVLRGMRSEAIKADVSNLRCELCLQNIKDISSLVDHLIDVHDKPIDKKYGPGIVPFLLNGDVIRCAICDLSFDFFTNLNRHLNEHFPNSICPSCGKSFAQESRLKSHILRSHETGRRLQHMCRRCGETFTSILDKDKHMSFKHDIMKYKCPYCNESFKSYTHRVKHMKELHDKKIEFRCSMCSASFLLCSLRTKHIRQVHIKDKRFACSVCTSHFVTAAALRNHMVKHGGERKYQCQVCMKAYARMKTLKEHMRIHNNDRRFVCEHCDSAFVQKCSLKSHIRTHHLKGDVLPPRKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -