Aleu024182.1
Basic Information
- Insect
- Agriopis leucophaearia
- Gene Symbol
- -
- Assembly
- GCA_949125355.1
- Location
- OX421288.1:3642956-3644713[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0034 0.25 12.5 2.8 1 23 23 45 23 45 0.97 2 15 0.1 7.3 7.9 0.1 3 23 71 92 69 92 0.93 3 15 0.24 17 6.7 1.0 2 23 113 135 112 135 0.94 4 15 4e-05 0.0029 18.6 0.6 1 23 140 162 140 163 0.96 5 15 1.2 89 4.5 2.0 2 23 169 190 168 190 0.91 6 15 0.00061 0.044 14.9 0.9 2 23 193 215 193 215 0.95 7 15 0.021 1.5 10.1 0.9 1 23 293 316 293 316 0.97 8 15 4.1 3e+02 2.8 0.3 3 20 345 362 343 366 0.86 9 15 0.01 0.74 11.0 0.0 2 22 391 411 390 413 0.89 10 15 0.00047 0.034 15.2 0.2 2 23 419 441 419 441 0.94 11 15 0.0018 0.13 13.4 1.7 2 23 446 468 445 468 0.94 12 15 0.027 2 9.7 0.4 1 23 473 496 473 496 0.96 13 15 1.6e-05 0.0012 19.9 3.9 1 23 500 523 500 523 0.97 14 15 0.0059 0.43 11.8 2.7 2 23 530 551 529 551 0.96 15 15 9.5e-06 0.0007 20.6 1.1 1 23 557 579 557 579 0.99
Sequence Information
- Coding Sequence
- ATGCGGACCAACTTGAAATTATTGTTCAATCATACGTCCATAATCCCTTTCATGTGGAAAACAAAGTACGCCTGCTACTACTGCAACGAAACGTACACAGAATACGCGAAATTCAGAAAGCATACGAAATCCCACGGGCCTTGCACCAAAAAGACTATAAAACGTCTTAAAACATTACGAGAAATTTTGATAGACGTGTCGGAAATCATTTGCGAGCTATGCCAGACAGAATTCAAAAGTCGTTCCGTCGTCGTCGATCATTTGATCAAAAGCCACAGTAAATTATACGATAAGAATGTTAGTATACCATTTCAAGAGTACAGATTGAGTGATCTCAGGTGTCTTCTTTGCGAACAGCAGTTCAGTAGTTTTCTAATGTTGGCGCATCATGTAGATACTTCCCATTCGAAAGACCGTTTCGAATGCAACGACTGCGGTAGATGGTTTACCACTGCAGCTAATATTTCACTGCATATAAGGACGCACCATGTTGCAAGCGCGTTTGCTTGCATCAAGTGTAATGAACAGTTCATAGATGAAGCACGCTTCAAGAAACATTTTTGCGTTCATTTGCGTCAATGTACGCGGTGCGATGCGAAGTTCAAATACGCAGGTAGTCTGAAAAAACACACCGCGAGAGAGCATTCCGATGATAAATGTACAAAATGCAGATATTGCTCTAAAGAGTGTTCAGATACCGAAATGAAATTTCATTCATCTAGTTGCGAACTCAACCTGAACCAAGTCGACATGAATGATGACAACCAGCTCACAAACCAGAGGTTAAAAAGAAACGCACATTGTAACCAAATTAGACGAAATATTCAATGTGTTTTAAATATGTCTACTGCAGTGCCCTTCAAATTCAAAGGAAAGTTCTCCTGTTTCTATTGTTCGCTATGGTTTTCTAATTTTGACGAACTGATTTCACATACTCAAACGGAACATCCAGTTTGCGAGCTGAAATCGAAGGCTATGCAAACGTGTAAGGGCGAAAAAGCTTGTATTAAATTGGATATAAACGGTCTAGCCTGCAAGTTATGCCATCAATCCATGTCGGATCTGAAAAGCTTCGTAGATCACGCCGTCGCCGAACACGGAGCGGACTATGACAAGTCTGTGCCGTTCAAAGATTGCTTCGAAGCGTTCCACCTCACTCAAGGCAGAATCCCGTGTCCAGAATGTCAAGAGCCTTTCGCGTATTTCGCGACTTTGTTGAAGCATTTAGGCGCAGAACATAATCATCACAAAGCCGTTTGCGCTTACTGCGGTCGAGGTTTTCGGACCACTACCAGTTTAGCGATGCACATATCCAACTCTCACACCGGGATGTGTGAATGTGGCGTCTGCAACGCAAAATGCAAGAACTCTGCAGCTTTGGCGCGGCACATGGCTCGATTCCATGACGCGAAAGATTTCAAATGTCCACAATGTCCGGAGCTGTTTGAAACTATATACAAGAAGCAGAATCATTTGATTAAAGCTCATAACGTCGGGCACAAATGTGCGTATTGTGGGAAGATGTTCACGAGGAATTCGTTCATGATGAACCATGTGAGGCGGACGCATTTGAAAGAACGGACCGTGCCTTGTTCGGTGTGCCACGTTAAGTTCTTCGATAGCTATCACATGAGGCTTCACATGGTCAAACATGAAGGCATGAGGCGGTTTAAGTGCGACGTTTGTGGAAAAACTTTCCTGAGAATAAGAAATTTGAAATCTCACATGGATACGCATAAGAAGGGATATTTGCAGTAA
- Protein Sequence
- MRTNLKLLFNHTSIIPFMWKTKYACYYCNETYTEYAKFRKHTKSHGPCTKKTIKRLKTLREILIDVSEIICELCQTEFKSRSVVVDHLIKSHSKLYDKNVSIPFQEYRLSDLRCLLCEQQFSSFLMLAHHVDTSHSKDRFECNDCGRWFTTAANISLHIRTHHVASAFACIKCNEQFIDEARFKKHFCVHLRQCTRCDAKFKYAGSLKKHTAREHSDDKCTKCRYCSKECSDTEMKFHSSSCELNLNQVDMNDDNQLTNQRLKRNAHCNQIRRNIQCVLNMSTAVPFKFKGKFSCFYCSLWFSNFDELISHTQTEHPVCELKSKAMQTCKGEKACIKLDINGLACKLCHQSMSDLKSFVDHAVAEHGADYDKSVPFKDCFEAFHLTQGRIPCPECQEPFAYFATLLKHLGAEHNHHKAVCAYCGRGFRTTTSLAMHISNSHTGMCECGVCNAKCKNSAALARHMARFHDAKDFKCPQCPELFETIYKKQNHLIKAHNVGHKCAYCGKMFTRNSFMMNHVRRTHLKERTVPCSVCHVKFFDSYHMRLHMVKHEGMRRFKCDVCGKTFLRIRNLKSHMDTHKKGYLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -