Basic Information

Insect: Agriopis leucophaearia
Gene Symbol: -
Assembly: GCA_949125355.1
Location: OX421288.1:3004146-3019557[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.17 12 7.2 1.8 3 23 139 159 138 159 0.98

2 12 1.9 1.4e+02 3.9 0.1 3 23 182 203 180 203 0.94

3 12 0.00024 0.017 16.2 0.3 2 23 226 247 226 247 0.96

4 12 0.00082 0.06 14.5 0.1 1 20 251 270 251 273 0.96

5 12 0.00054 0.04 15.0 1.7 1 23 278 301 278 301 0.98

6 12 3.2e-05 0.0023 18.9 0.4 2 23 325 347 324 347 0.96

7 12 0.00084 0.061 14.4 1.6 1 23 352 374 352 374 0.92

8 12 1.1e-07 8.2e-06 26.6 1.3 1 23 380 402 380 402 0.99

9 12 1.1e-07 8.2e-06 26.6 1.3 1 23 435 457 435 457 0.99

10 12 1.1e-07 8.2e-06 26.6 1.3 1 23 490 512 490 512 0.99

11 12 1.1e-07 8.2e-06 26.6 1.3 1 23 545 567 545 567 0.99

12 12 0.84 62 5.0 1.5 1 9 600 608 600 608 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.17	12	7.2	1.8	3	23	139	159	138	159	0.98
2	12	1.9	1.4e+02	3.9	0.1	3	23	182	203	180	203	0.94
3	12	0.00024	0.017	16.2	0.3	2	23	226	247	226	247	0.96
4	12	0.00082	0.06	14.5	0.1	1	20	251	270	251	273	0.96
5	12	0.00054	0.04	15.0	1.7	1	23	278	301	278	301	0.98
6	12	3.2e-05	0.0023	18.9	0.4	2	23	325	347	324	347	0.96
7	12	0.00084	0.061	14.4	1.6	1	23	352	374	352	374	0.92
8	12	1.1e-07	8.2e-06	26.6	1.3	1	23	380	402	380	402	0.99
9	12	1.1e-07	8.2e-06	26.6	1.3	1	23	435	457	435	457	0.99
10	12	1.1e-07	8.2e-06	26.6	1.3	1	23	490	512	490	512	0.99
11	12	1.1e-07	8.2e-06	26.6	1.3	1	23	545	567	545	567	0.99
12	12	0.84	62	5.0	1.5	1	9	600	608	600	608	0.93

Sequence Information

Coding Sequence: ATGTCTAAGCTGGATGGTGAGCCATCAGAGAGGCTTATATGCGCACCGTGCATGCACAAGCTCCGAGAGGCGTGGAGCTTCAAGGTGCAGTTGCTGGAGAAAGAGCAGAGATTCCTCCACAAAGAAAAGACACAATCCGATGACGAGTTAGATCCAGATCAACTCGAGGAATATCACGCACTTGGCGACGGGCGCGAACTCCACGACATGGGCGGGAGCTCCAGTTCAGGCGATGTACCCACCGAAAGCGTCGAGGCCCGAAAACCACATAGAACTTTTCACGCAGTTAAAAGAGATAAAAAGAAATCAGTTTCCAATATAAGTTTAGGTGACAAATACTATGTGTACAACGCTATGTCAATAATAAAATTCTCGTACGCGTGTCCGTTCAAGAACAGATTCAACCACATTCTGTGCCACTACTGCGCTCAGTACTTCCTGCATCCGGAACAACTGAGGGAGCACGTCCTCACGCATTCACACAAGGAATTCAAGAATACTACCAGAAATAGGTATATAAAAATCGACATAACTAGAATCGACTGCAAGTTATGTTCAGAAAAAATCGACGATCTAGAAGTGTTCAAGCGCCACCTCGTGACAGCTCACAAGAAACCGTACTTTCTGCACAGTAAAGATGGCGTGATACCGTACAAGCTGGTACAGAATGTCAACACTTGCACCATGTGCGGAGAAAACTTTCCGCAGTTCAAGGCCCTTGTGAGACATATGGACCAACATTTCAGCAATTATGTTTGCGAGACATGCGGAATGGGCTTCATGGACGAGAACACCTTACAGAAGCACATGCCTGCTCACGATGGTAAGCGCTACTCGTGCGACATCTGCGGGAGAAGTTTGAAATCAGAGTACACACTGCAATGTCATATACGAAGGATACACGAAAAGAACGAAGCTGGGAGCGAGCTGTCAGACTCAGATGCACCACTGAAGAAATCTGAGGTGGAGGTGTCCTGCCAGGGTTGTGATCAGACATTCAAGTCACGCAAGTACTTGGCGATACACGTGAGAAAAGTGCACATGAATTACAGACACATATGCCAAGTGTGTGGTCAGAAGTTCTTCACTCGCTTCGCTCTGAACAACCACATGCCGACTCACACCGGGGAGCGCAACTTCAAGTGTAAGGAGTGCGGCAAGAGCTACCCGCGACTCAAGACGCTCAAGGAACATATGCGGATACACACCAACGACAGGAGATATAGGTACGAGTGCCAAGTGTGTgctcacaagttgttcactctGAACAACCACATGCCGACTCACACCGGGGAGCGCAACTTCAAGTGTAAGGAGTGCGGCAAGAGCTACCCGCGACTCAAGACGCTCAAGGAACATATGCGGATACACACCAACGACAGGAGATATAGGTACGAGTGCCAAGTGTGTgctcacaagttgttcactctGAACAACCACATGCCGACTCACACCGGGGAGCGCAACTTCAAGTGTAAGGAGTGCGGCAAGAGCTACCCGCGACTCAAGACGCTCAAGGAACATATGCGGATACACACCAACGACAGGAGATATAGGTACGAGTGCCAAGTGTGTgctcacaagttgttcactctGAACAACCACATGCCGACTCACACCGGGGAGCGCAACTTCAAATGTAAGGAGTGCGGCAAGAGCTACCCGCGACTCAAGACGCTCAAGGAACATATGCGGATACACACCAACGACAGGAGATATAGGTACGAGTGCCAAGTGTGTgctcacaagttgttcactctGAACAACCACATGCCGACTCACACCGGGGAGCGCAACTTCAAGTGTAAGGAGTGCGGCAAGAGCTAG
Protein Sequence: MSKLDGEPSERLICAPCMHKLREAWSFKVQLLEKEQRFLHKEKTQSDDELDPDQLEEYHALGDGRELHDMGGSSSSGDVPTESVEARKPHRTFHAVKRDKKKSVSNISLGDKYYVYNAMSIIKFSYACPFKNRFNHILCHYCAQYFLHPEQLREHVLTHSHKEFKNTTRNRYIKIDITRIDCKLCSEKIDDLEVFKRHLVTAHKKPYFLHSKDGVIPYKLVQNVNTCTMCGENFPQFKALVRHMDQHFSNYVCETCGMGFMDENTLQKHMPAHDGKRYSCDICGRSLKSEYTLQCHIRRIHEKNEAGSELSDSDAPLKKSEVEVSCQGCDQTFKSRKYLAIHVRKVHMNYRHICQVCGQKFFTRFALNNHMPTHTGERNFKCKECGKSYPRLKTLKEHMRIHTNDRRYRYECQVCAHKLFTLNNHMPTHTGERNFKCKECGKSYPRLKTLKEHMRIHTNDRRYRYECQVCAHKLFTLNNHMPTHTGERNFKCKECGKSYPRLKTLKEHMRIHTNDRRYRYECQVCAHKLFTLNNHMPTHTGERNFKCKECGKSYPRLKTLKEHMRIHTNDRRYRYECQVCAHKLFTLNNHMPTHTGERNFKCKECGKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -