Aleu024606.2
Basic Information
- Insect
- Agriopis leucophaearia
- Gene Symbol
- -
- Assembly
- GCA_949125355.1
- Location
- OX421288.1:8495950-8505175[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 8.8 6.4e+02 1.8 0.1 1 20 33 53 33 55 0.79 2 29 0.27 20 6.5 4.0 1 23 85 107 85 107 0.93 3 29 0.093 6.8 8.0 0.6 1 23 112 135 112 135 0.93 4 29 0.26 19 6.6 4.5 1 23 168 191 168 191 0.95 5 29 7.1e-05 0.0052 17.8 3.7 2 23 199 220 199 220 0.95 6 29 8e-05 0.0058 17.7 1.8 1 23 227 250 227 250 0.97 7 29 1.3 99 4.4 0.6 1 20 377 397 377 399 0.69 8 29 0.016 1.2 10.4 1.8 1 23 429 451 429 451 0.97 9 29 0.076 5.5 8.3 0.6 1 23 456 479 456 479 0.92 10 29 0.0051 0.37 12.0 3.0 1 23 512 535 512 535 0.94 11 29 7.4e-05 0.0054 17.8 3.4 2 23 542 563 541 563 0.95 12 29 0.00023 0.017 16.2 1.6 1 23 570 593 570 593 0.97 13 29 0.00029 0.021 15.9 0.2 1 23 606 629 606 629 0.97 14 29 0.12 8.5 7.7 4.1 2 21 730 749 729 750 0.93 15 29 0.15 11 7.3 1.1 3 23 756 776 755 776 0.93 16 29 0.017 1.2 10.4 0.5 1 23 809 831 809 831 0.92 17 29 0.0016 0.12 13.5 0.4 1 23 866 889 866 889 0.93 18 29 7.2e-05 0.0053 17.8 2.2 1 23 895 917 895 917 0.98 19 29 0.36 26 6.2 1.7 5 23 927 945 925 945 0.97 20 29 1.7 1.2e+02 4.0 2.5 1 23 951 974 951 974 0.87 21 29 0.0045 0.33 12.2 0.8 2 21 1098 1117 1097 1118 0.94 22 29 0.71 52 5.2 0.0 3 23 1125 1146 1123 1146 0.94 23 29 0.1 7.6 7.9 0.8 2 23 1152 1174 1151 1174 0.94 24 29 4.2e-05 0.0031 18.5 3.2 1 23 1179 1201 1179 1201 0.98 25 29 2.3e-05 0.0017 19.4 0.6 1 23 1251 1274 1251 1274 0.95 26 29 0.071 5.2 8.4 0.7 1 23 1280 1302 1280 1302 0.84 27 29 0.13 9.7 7.5 0.1 1 23 1308 1330 1308 1330 0.97 28 29 0.01 0.74 11.0 0.7 1 23 1336 1359 1336 1359 0.94 29 29 1.5e-05 0.0011 20.0 0.2 2 23 1366 1388 1365 1388 0.96
Sequence Information
- Coding Sequence
- ATGAGAAATATAAGACTGCGTCTCAATTATATTCGTTCTGCGCGCAAAAAGGCAAAAGCAAATATAAGTAATAGCAAGCAAAGAGGGTCTCATAAATTTTCGTGTCCTGATTGCAAAAACGAAGGATTTGAAGCGTTATACAAGTTCAACGCCCACTTGAACCTCAACAAGAAGCATTGTTGTCCACATTGTTTCGCAATCATGACCATCAAGGAGTTTGGGGAGCATCTCACATCACACAACATGCCCAGTTTTGCGTGTGACATCTGCCATATACATTTTGATAAAGAATCACGTTTGCTGAGGCACAAAACATTTCATAAGAGAGGGAAATTCATGTGTCCAGAATGCAAATACACTTTTCTGACAATGGATCGGCTGACAGTGCACACGACCAGCGTCCACGCCACAGTCCGCTGCGCTTGCGACAAAGTCTTCCACGGGAAAGGATGCTACATCTTTCACAAAAAAAGAATGTGTCCAAAAAAGCGTATAGAAACGTACATTTGTGATTATTGCTCCAAAAAATTTAACAAGAAATGTATTTTAGGTAAACACATCAAAAACTTTCACACTGTTATACAATATCGAGAACAGTGTGACAAATGTGGGAAAAGGTTTAAGAATAAAGCTCATTTGAAAGAGCATAGCTATATGCATGATAAAGTGCTGGACCGGTTCTCGTGCGAGTTCTGCGGCAAAAACTACAGCACGCCAAGAGGTTACAGAAAACATATGACTAGAATGCACTACCAAGTCAACCCTGACTTGTACAAAAAGAAGACCTATCCTTGTAAAATTGAATGGACGCCTTGCCTGCCGCCACGCCTCTGCCGATCCTGCTCTTCTGCCATCAATAACTTTTTCCCCTTCTTCGTACTGTGCCGTGAATCAGCTCAGAAATGGAATCAAATGGCTGACTGTATAAACACTATATCAGTCAGCAAAGAAGCCACCACAGCATACGTGTTACTGGGCGAAGAGCCACAAATTTTGGTAGACAGAAGCACAGTCAAAAATAAAACGCCCAAACGAATCATTGAGAAAATAACACTGCGTGTCAGGTATATGCGTACTGCGAGGGGAAAGGCGAAAATGTCAACACGCAAGCGAAGAGGTTCCTACAAATTTTCGTGTCCGGATTGCAAAAAAACAGGATTCGAAAAGTTCTATAAGTTCAACGCCCACTTAAACATCAACAAAAAGCATTGCTGTCCACATTGCTTAGCAATAATCGACATAAAAGAGTTTGGGGAGCATCTCACATCACACAATATGCCCAGTTTTGAGTGTGACATCTGCaatttacattttgaaaaagAAGTAAGTTTGCTGAGTCACAAAAAGTATCATAAGAGAGGGAAATTCGTGTGTCCAGAATGCAAATACACTTTTCTAACAATGGATCGGCTGACAGTCCACACAAACTTCGTGCACACCACAGTCCGCTGCGCTTGCGACAAGGTATTCCACGGGAAAGGCTGCTATTTCGGTCACAAAAAGAGGGTATGCGCAAAAAAACGTACACAGAAGTACATTTGTGATTATTGCTCAAAGGAATACAAGCAGAAATCGATTTTGAGGAAACACATAGAACATTTTCACGAGGTGGTATATTCTAAGCAGTGCGATCATTGTGGTAAAATGTTTAGGAATAAAACGGAATTGAAAGAGCACAGTTATATGCATGATAAAGTGTTGGACCGGTTCTCGTGCGAATTCTGCGGTAAAAACTACAGCACGCCAAGAGGATACAGCAAACATATGACTAAAATGCATTACCAAGTGGATCCTGAATTGTACAAGAAGAGGACGTACCCTTGTAAAATTTGCGGGAAGGTCTTGATCAGTGAATTGAATCTGAAGAATCATACTTTGAGACAGCATAAGAAAGTAGACGAGGAGACAGACCTGCCATCCGGTCTGTGCCGGGAGTGCACTGAGGACATCATAACAGCTGTCACCTTCAAGCAGCTGTGCCAGCAATCAGCTCAGTACTGGGAGGAGGCTACCAATTACCTTACAAGCATTAACAAGCCTACAGTTGAAGACAAGACGTTCTTCATCTTCTACCCTCAAGAAAAACCAGTCTACAACGTTACGGAGCCTGCTTCAACCACACAAATTGCTTTGGATGTCCTGAACAAACCAAAACGgattaaaactaaaaagaaacGCTTCTCGTGCAGCTGTCCATTTTGCGATAAAAAGTTTAGCTGCTTGGAAAATTTAAACGAACATCTGAAGTACACTTTGCAAAGATTTTGTCACGAATGCGGTATCGGCGTCAGTAAGAAAAATTTAGCTCGACATTTGTCTCTGAAACATAACATAGAAGTATTGGAGTGCGAATTTTGTCACAACATATTTCAAAATGATGCTGAAGGTCAGAGGCATTGGGTGAAGCATCATGGACCTCATACGCATTCATGTTCATTGTGCGGAACTGGTTTTCCCAGTGAACGAGGTCTCCGAGCCCACAGCTACCTACACACACTCTTTCATTGTACATGCGGTGCAAACTTCGAGAACACTCGATGTCACAAGTACCATATATCCAACTGCAAGCCGAAAAAGCGTCAAATCGAATCTCACTTCGAATGCGATCACTGCGGCGTCGTATACGACAAGAAGCCGTCGCTTCGTATCCACATCGTTCAAAAACATCTAAACGTACTCCCATTCGTGTGTCAAACATGCGGGAAGCGTACGTCTACTCTGGCGCATTTGAGATCTCACGCGAAAACTCACGAAACCGAGCGGAAGGTTCTAGAATGTCATTGCGGGTCTAAATTTCGTACCGAGTTAGGATATAAGTTGCATATGCGAATCCATTCTGGGGATAAGCCTTATAAATGCCATCTTTGCGAGGAAAGCTTCCTGTCTGCATCTAGAAGACTAGATCATACCAAAAGACGTCATCAGTCTTCGAAAGAGATGCCGCACGGATGCAGTGAGTGCAGTGCAAAATTCATACTAGAAGAAGATTCTTGCCCGATCGGTGCATGCGTCGGATGCGCGAGCGCAGCCCTCTCCGCGCAAGAATTTCGAATATTCGTACGCAACTCGGAGAAACTGTGGCACAAAGCCATCGCCAACCTCGCCAACCTAGAAAACGAACAAGAGGAACGCGCCAAATCCATTTGCGCCTTCATCACACCTAACGATTTAACAGTCCTAACCGCCAAAGACTACACTGGAGGCGAACCAAAAGAAGTCGTCAATCGTTCCAAAACTACCGTCAAAAAAACCAAACGGAAGGCCAGACGGCACCACACAGGACCTATGAGTACTTGTCCAGATTGTCTGAAAACTTTCACGagcccattttttttgcatgagCATTTGAAAAACAATGGCCCTAAGACGGCATGTGTAACTTGCGGTGCTATAGTAACTAGGGGTCGAGATTTGATAGAACACATGGCGTCCGCTCACAACGAGGTCTTGACAAAGTGTCCCCAATGCCCTTGCTTGCTTAAAAATGAAGAAGAGCTGAGTCGGCATTTGAAAGACGCTCACAAACCAGGCGTTTTCACTTGCTTAGACTGCGGCCGGACCTTCCCAAGAAAGTCTACCTTCGAGCATCATTCCCAGATGCATGTGGTTCGAACGTGCCGCTGCTGTAATAGGCAGTTCACAAACAGAAGTTGCTACAGAGAGCATCGGATTCAATGCGAACCCGACGCCAAACCTGACAAGAATAGTGTGCCCAGAAATCGACGATCGAACATCCGCGACCCTGCGGTGTTTATATGCGATTACTGTAATAAGAAGTACACAACGCGTCCTCAGTTGAAGAACCACATACTCTGGATTCATATGGATCACAGACCACATCAATGTCAATGGTGCGGGAAGAGGTTTTTCACTCTAGGTCGGATGGCTGAGCACTCTGTGGTCCACACGCGTGTGCGAAACTTCGAGTGCGATATTTGTGGCGTGAAATTAGTTTCCAAAATGGCGGCTGTGTACCACAGACGGCGTCACACTGGGGAAAAACCTTATAAGTGCGAAGACTGCGATGCTACCTTCATTTCTTCATCGCGGAGACTTGAGCATGCTAAAAGAAAACACAATAAAGGTACAAGGATACAGTGTCCCCTGTGTCCGAATAACTTTGTCCGGAAAAGTGAGCTGAAAAGGCACATGGATAAGGCTCATGGTACTGTGGATGAGGGGGAAAAGAAGCTTGATATTATGGGGGACTGGAGGCTGGGATCAGAACACCCCCAAATGGAAAGTGTGGCTACAATGTAG
- Protein Sequence
- MRNIRLRLNYIRSARKKAKANISNSKQRGSHKFSCPDCKNEGFEALYKFNAHLNLNKKHCCPHCFAIMTIKEFGEHLTSHNMPSFACDICHIHFDKESRLLRHKTFHKRGKFMCPECKYTFLTMDRLTVHTTSVHATVRCACDKVFHGKGCYIFHKKRMCPKKRIETYICDYCSKKFNKKCILGKHIKNFHTVIQYREQCDKCGKRFKNKAHLKEHSYMHDKVLDRFSCEFCGKNYSTPRGYRKHMTRMHYQVNPDLYKKKTYPCKIEWTPCLPPRLCRSCSSAINNFFPFFVLCRESAQKWNQMADCINTISVSKEATTAYVLLGEEPQILVDRSTVKNKTPKRIIEKITLRVRYMRTARGKAKMSTRKRRGSYKFSCPDCKKTGFEKFYKFNAHLNINKKHCCPHCLAIIDIKEFGEHLTSHNMPSFECDICNLHFEKEVSLLSHKKYHKRGKFVCPECKYTFLTMDRLTVHTNFVHTTVRCACDKVFHGKGCYFGHKKRVCAKKRTQKYICDYCSKEYKQKSILRKHIEHFHEVVYSKQCDHCGKMFRNKTELKEHSYMHDKVLDRFSCEFCGKNYSTPRGYSKHMTKMHYQVDPELYKKRTYPCKICGKVLISELNLKNHTLRQHKKVDEETDLPSGLCRECTEDIITAVTFKQLCQQSAQYWEEATNYLTSINKPTVEDKTFFIFYPQEKPVYNVTEPASTTQIALDVLNKPKRIKTKKKRFSCSCPFCDKKFSCLENLNEHLKYTLQRFCHECGIGVSKKNLARHLSLKHNIEVLECEFCHNIFQNDAEGQRHWVKHHGPHTHSCSLCGTGFPSERGLRAHSYLHTLFHCTCGANFENTRCHKYHISNCKPKKRQIESHFECDHCGVVYDKKPSLRIHIVQKHLNVLPFVCQTCGKRTSTLAHLRSHAKTHETERKVLECHCGSKFRTELGYKLHMRIHSGDKPYKCHLCEESFLSASRRLDHTKRRHQSSKEMPHGCSECSAKFILEEDSCPIGACVGCASAALSAQEFRIFVRNSEKLWHKAIANLANLENEQEERAKSICAFITPNDLTVLTAKDYTGGEPKEVVNRSKTTVKKTKRKARRHHTGPMSTCPDCLKTFTSPFFLHEHLKNNGPKTACVTCGAIVTRGRDLIEHMASAHNEVLTKCPQCPCLLKNEEELSRHLKDAHKPGVFTCLDCGRTFPRKSTFEHHSQMHVVRTCRCCNRQFTNRSCYREHRIQCEPDAKPDKNSVPRNRRSNIRDPAVFICDYCNKKYTTRPQLKNHILWIHMDHRPHQCQWCGKRFFTLGRMAEHSVVHTRVRNFECDICGVKLVSKMAAVYHRRRHTGEKPYKCEDCDATFISSSRRLEHAKRKHNKGTRIQCPLCPNNFVRKSELKRHMDKAHGTVDEGEKKLDIMGDWRLGSEHPQMESVATM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -