Basic Information

Insect: Agriopis leucophaearia
Gene Symbol: -
Assembly: GCA_949125355.1
Location: OX421289.1:1096283-1097848[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1 73 4.8 0.1 2 23 211 233 210 233 0.88

2 10 0.00027 0.02 16.0 1.4 1 23 239 261 239 261 0.98

3 10 0.0034 0.25 12.5 9.8 1 23 267 289 267 289 0.97

4 10 0.00012 0.0088 17.1 0.0 2 20 296 314 295 316 0.93

5 10 4.8e-07 3.5e-05 24.6 1.0 2 23 334 355 333 355 0.96

6 10 1.7e-06 0.00012 22.9 2.7 1 23 362 384 362 384 0.98

7 10 8.9e-05 0.0065 17.5 1.7 1 23 390 412 390 412 0.97

8 10 3.2e-06 0.00023 22.1 0.8 1 23 418 440 418 440 0.97

9 10 4.5e-05 0.0033 18.4 3.3 1 23 446 468 446 468 0.97

10 10 0.001 0.076 14.1 3.0 1 23 474 497 474 497 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1	73	4.8	0.1	2	23	211	233	210	233	0.88
2	10	0.00027	0.02	16.0	1.4	1	23	239	261	239	261	0.98
3	10	0.0034	0.25	12.5	9.8	1	23	267	289	267	289	0.97
4	10	0.00012	0.0088	17.1	0.0	2	20	296	314	295	316	0.93
5	10	4.8e-07	3.5e-05	24.6	1.0	2	23	334	355	333	355	0.96
6	10	1.7e-06	0.00012	22.9	2.7	1	23	362	384	362	384	0.98
7	10	8.9e-05	0.0065	17.5	1.7	1	23	390	412	390	412	0.97
8	10	3.2e-06	0.00023	22.1	0.8	1	23	418	440	418	440	0.97
9	10	4.5e-05	0.0033	18.4	3.3	1	23	446	468	446	468	0.97
10	10	0.001	0.076	14.1	3.0	1	23	474	497	474	497	0.94

Sequence Information

Coding Sequence: ATGTGTGAGGAGGAAGAAGATTACTGCCGCCTCTGTGCCGAGCCAACGCTGAAACTCAACCTAATATCGCCCGAAGACGAGGTTGCTATTTCTTCCAAGTTTGTGACAAAAATGCTTTGGATAAACATCGACGTTACTACATCATCTCTTCTTCCAAACGGCATCTGCTTTTCATGTTTTGATCAACTAGAACGTACCTATCGTTTCCTAAACACCGTACGAACCGCACAGCAAAAACTACGGGAAATATACATTAAGAAAGACACCAATATCCCGAAGATAGATTTGTCCGAAGATGTAGGAAAACCCGTAAATAAAGACTGGGACGAGTTCCAGGAAACAAAACCTAATATCAAAGATGAGAATGAAGAATCTGAAGTGCAATTATCAGCGGTATCCACTAACATGTTGATAGAAATAGGCATGGGACCCGAAATAAAGTCTGAGAGAGATAGCTATGACGCTCTCATAGATTCTGAAGGTTTTAAATCTTCTGACGACGAGGATGAACCATTACTAGCTGTAGCAAAGaagaaaaagtacaaaaaaagggtaaaatttgaagaaaatgtaGATGATTTGACGTCAACTCTACCGTTTACAATTCTTACTTGGGAAGACTACACATGGCGTTGTGGTGAATGTGACGCGTTATTCCAGACTGTACAGTCACTTCGTCTCCACTCAATTCAAATACACACCGTCTGCTGTGTGTTTAAATGCAACGACTGCGGTAAAAACATATCTAACTTTAAAATGTTTGTCAAACATGTGAGAGAACACAAGAAACTGCTCCGATACTGCtgtgaattctgtaataaacgCTTCAATCGAAGCACATgcttaaaaaaacactattcaTCTCACAAAGACGACTTATACTTAACCTGCGAGAACTGCGGATGGACTTTCGAATCCCCGGAAGAGCTCCAAGACCATATAATTCTATTCACAAAAGGTTACAAACGGAAATCTCTGAAGGAAGAAATCGTGGACCTAAAATGTGATATCTGTGATAAGGAATTCAAATCTAGAAGTAATCTACAGCAGCATAAGCTAGTCCACACGGAACGCTCAAGAGATTTTTCTTGTCATGTGTGCGGTAAAATGTTTTTCACGAAAGGGACTTTAAGCACTCACATTATGACTCACGAAGACGTTAAACCGTACAAATGTGAACACTGTTCTATGTCCTTCAGAGCTCGAGGTAACCTGCAGTCTCATGTCAGCTTACATTCCGGAGCTAAGCCGTTTGTCTGTGAGCAATGTGGAAAAAGTTTCCGCGTAAAACGCTTATTGAAATCTCATTATATCATCCACACAGACTTAATGCCGTTCATCTgtgaatattgtaataaaactttcCGTTTTAAGACTCGCTTAAACTTACATTTGAGACAGCATACAGGGGCCAAGCCCTATAACTGCATATATTGTCAACGGGACTTCACGAATGGTTCAAACTATAAAAAACATATGAAGAGGAGACATAACATTGATACTTCCAAAAAGAAATTTTTCAATATTGTGAGAGAGGACAACAATGATCTTGTTTTGGGGGATTAG
Protein Sequence: MCEEEEDYCRLCAEPTLKLNLISPEDEVAISSKFVTKMLWINIDVTTSSLLPNGICFSCFDQLERTYRFLNTVRTAQQKLREIYIKKDTNIPKIDLSEDVGKPVNKDWDEFQETKPNIKDENEESEVQLSAVSTNMLIEIGMGPEIKSERDSYDALIDSEGFKSSDDEDEPLLAVAKKKKYKKRVKFEENVDDLTSTLPFTILTWEDYTWRCGECDALFQTVQSLRLHSIQIHTVCCVFKCNDCGKNISNFKMFVKHVREHKKLLRYCCEFCNKRFNRSTCLKKHYSSHKDDLYLTCENCGWTFESPEELQDHIILFTKGYKRKSLKEEIVDLKCDICDKEFKSRSNLQQHKLVHTERSRDFSCHVCGKMFFTKGTLSTHIMTHEDVKPYKCEHCSMSFRARGNLQSHVSLHSGAKPFVCEQCGKSFRVKRLLKSHYIIHTDLMPFICEYCNKTFRFKTRLNLHLRQHTGAKPYNCIYCQRDFTNGSNYKKHMKRRHNIDTSKKKFFNIVREDNNDLVLGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00143252;
90% Identity: iTF_00034029;
80% Identity: -