Aleu024091.1
Basic Information
- Insect
- Agriopis leucophaearia
- Gene Symbol
- -
- Assembly
- GCA_949125355.1
- Location
- OX421288.1:2883158-2891905[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.15 11 7.4 0.1 2 23 31 53 30 53 0.91 2 17 0.00027 0.019 16.0 0.4 1 23 74 96 74 96 0.96 3 17 0.0015 0.11 13.7 0.2 1 23 100 123 100 123 0.96 4 17 0.54 40 5.6 0.1 1 23 164 187 164 187 0.93 5 17 0.86 63 5.0 0.1 2 23 211 233 210 233 0.90 6 17 0.00051 0.037 15.1 0.3 1 23 254 276 254 276 0.97 7 17 0.11 7.9 7.8 3.1 2 19 281 298 280 302 0.90 8 17 5.1 3.7e+02 2.5 2.1 1 23 420 442 420 443 0.87 9 17 0.47 34 5.8 0.1 2 23 466 487 465 487 0.94 10 17 0.018 1.3 10.2 4.4 1 23 509 531 509 531 0.97 11 17 0.0002 0.015 16.4 0.9 1 23 535 557 535 557 0.98 12 17 0.00061 0.045 14.9 0.8 1 23 562 585 562 585 0.96 13 17 0.00023 0.017 16.2 2.1 1 23 591 614 591 614 0.98 14 17 0.027 2 9.7 1.3 1 23 621 644 621 644 0.95 15 17 0.00082 0.06 14.5 1.5 1 23 650 672 650 672 0.95 16 17 1.8e-06 0.00013 22.9 0.6 1 23 678 700 678 700 0.99 17 17 3.8e-07 2.8e-05 25.0 2.6 1 23 706 728 706 729 0.96
Sequence Information
- Coding Sequence
- ATGGCAAGCCATCCGGTGAAATCGGAAAGAATCGAATTTCTCCGTAACTCGCGTCCCGCTGACACCATCAAAACCGACGTCGTCAATCTGAAATGTGATCTTTGTAATGAGAGCATTAAAAATATAGCGACTCTTATGGATCACCTTAGCGACAAACACAATAAACCTATAGTGAAAAAATACGACTCTGGTATCGTGCCTTACTTGTTAGACAACGGATTCACGTGCGCGTACTGCGGGGAATCATTCGATCGATTTATAACTTTAAATACGCACGTCATCCAGCACAAATTAAACTTTGCTTGCTCGCAATGCGGTCAGTACATATCTAGTCCTGAAGGATTAAGGAAGCATATCCTTAGACGCCACGTTAAAACTCCGAGAAGCAACTTCCGACCAAAACTAAGTGACTATAACGACGCCAGACACAATGCGTCTATCATTCTAGAATGCTCCAACATTTGTCCTTTCAAATGGCATCGAAATGTATTTCGGTGTGGTTACTGTGATTTTAAATCTGCTGATTTTGGTCCGGTTAGGGAACACATTAATAATGTCCATCCGAAAAGACTCGAAGCCCTTCACTACTCGCGTCCCACAGAAATATTCAAAGCCGACGTCACGAATCTCAAATGCGAACTGTGCGATCAAACAATACAAGATATGAAAGCGCTAATCGATCACTTAAGCGACACCCACAAAAAGTCGATCAAGAAACACTACGGCGCTGGCATCGTTCCATTTCTATTATGCGACGGATTCACGTGCGCCGATTGCGGCCTAACTTTTGATCGgtttatgaaattaaatattcaCGTTAACGAGCATTACCCTAATTGCATCTGTTCACAGTGCGGACAGGCATTCTCTAGCGAAAATAGACTAAGAGCGCATTGCGAACAGCACAAGACAAAGATAATGCAGTTCAAATGCGGATCTTGCGGAGAGGCCACAGCTCTCGTAGAGAAGAGCTTCCCAACCCAAAAGCAAGAGCGGTTGTGGCCGAGCGGAAGAATGTGCGCTTtgcaatctgatggcacctggtTTGATCCTTTGCACTCGGCACCAACGacaaccggaAGAAAAACGGAAGCAATACAGATAAAACACGAAGCGGAGTCCGACTCTGAGAATTATGTCGCGAGCCTCGCGCCCGGACCCACCGATGGCGCCTTGAGGCGAGCCGCCTTCAGGAATAACATCACCACCATCCTTCACACCTGCACCGCGTATCCCTTTAAATACAGGAAAGGCACCTACCTCTGCTTCTACTGCAAGATGACCTTCCTGGAACCGGAGAAGCTTCGAGAACACAATACCCTTCACCATTCACAATCCAACCAACTCCTCAAACCGAAGAAATACGAACCTCTAAAAATGGACTTCTCAAACACGTCCTGCAGACTCTGTGATACCCCCATCGAAGACTATGCGAGTTTAAAATCTCACTTGACAGAGCATGGGAAAATAATCGACTGCACTTGGGGAGATAGTGTGCTTCCTTATAAGCTGAGCAAAGAGGAGCATCGCTGTCAGGTGTGCGGGAAACGGTACGAGATGTTCTTGAGTCTCCATAAACACATGAACGACCATTATGAGCATTACATTTGTGAAACTTGCGGGAAACGATTCGCGACTTCCCAACGGATGGTCAACCATTCACGCACTCACGAGCGGGGCGTGTTCCCTTGCAAGCATTGCGCGGAAACTTTCCAATCATACTCGTCTCTCTACGCTCATATAGCCAAAGTTCACAAGCTGAACAAAAGGTACAAATGCCCCATTTGCGATGAAAAGTTCGGCTCGTACAAGCACAGGTTGAAGCATTTGAATACGGTGCACGGGGAAAAGACTGCTGTGTTCCCTTGTCCGTCTTGTCCTAAGGTCTTCGATTTATGCAGCAGAAGAACGGCTCACATACGGTTTCAGCATCTGCAAGAGAGGAATCATATCTGTTCTGTTTGTGGCATGAAGTTCTTTACTAACTACGAGTTGCAGGAACACTCTATCAAGCACGGCGGAGAGAGAATATACCAGTGTGACGTCTGCAAGAAGGCTTATGCTAGATTAAAGACTTTGAGAGAGCATATGAGGATCCATAACAACGATAGACGGTTTGTCTGTCCGGTTTGCGGACAGTCGTTCATACAGAACTGCAGCTTGAAACAGCATATGAGGGTTCATCATCCGACGCATTTAAAAGATGTGTTCTGA
- Protein Sequence
- MASHPVKSERIEFLRNSRPADTIKTDVVNLKCDLCNESIKNIATLMDHLSDKHNKPIVKKYDSGIVPYLLDNGFTCAYCGESFDRFITLNTHVIQHKLNFACSQCGQYISSPEGLRKHILRRHVKTPRSNFRPKLSDYNDARHNASIILECSNICPFKWHRNVFRCGYCDFKSADFGPVREHINNVHPKRLEALHYSRPTEIFKADVTNLKCELCDQTIQDMKALIDHLSDTHKKSIKKHYGAGIVPFLLCDGFTCADCGLTFDRFMKLNIHVNEHYPNCICSQCGQAFSSENRLRAHCEQHKTKIMQFKCGSCGEATALVEKSFPTQKQERLWPSGRMCALQSDGTWFDPLHSAPTTTGRKTEAIQIKHEAESDSENYVASLAPGPTDGALRRAAFRNNITTILHTCTAYPFKYRKGTYLCFYCKMTFLEPEKLREHNTLHHSQSNQLLKPKKYEPLKMDFSNTSCRLCDTPIEDYASLKSHLTEHGKIIDCTWGDSVLPYKLSKEEHRCQVCGKRYEMFLSLHKHMNDHYEHYICETCGKRFATSQRMVNHSRTHERGVFPCKHCAETFQSYSSLYAHIAKVHKLNKRYKCPICDEKFGSYKHRLKHLNTVHGEKTAVFPCPSCPKVFDLCSRRTAHIRFQHLQERNHICSVCGMKFFTNYELQEHSIKHGGERIYQCDVCKKAYARLKTLREHMRIHNNDRRFVCPVCGQSFIQNCSLKQHMRVHHPTHLKDVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -