Basic Information

Insect: Agriopis leucophaearia
Gene Symbol: -
Assembly: GCA_949125355.1
Location: OX421290.1:384012-386862[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.6e-07 1.9e-05 25.5 2.7 2 23 176 198 176 198 0.96

2 14 0.0057 0.41 11.8 0.2 2 23 205 227 204 227 0.94

3 14 0.0043 0.32 12.2 2.8 2 23 234 256 233 256 0.93

4 14 1.2e-06 8.6e-05 23.4 0.6 2 23 264 286 263 286 0.96

5 14 7.4e-05 0.0054 17.8 1.2 1 23 292 315 292 315 0.95

6 14 0.00024 0.017 16.2 0.6 1 23 322 345 322 345 0.97

7 14 0.0001 0.0075 17.3 2.5 2 21 351 370 351 371 0.95

8 14 0.00041 0.03 15.4 3.5 1 23 387 410 387 410 0.96

9 14 0.011 0.81 10.9 0.5 5 23 423 442 420 442 0.92

10 14 3.3e-05 0.0024 18.9 0.4 2 23 448 470 448 470 0.97

11 14 0.17 13 7.2 3.4 2 23 478 500 477 500 0.91

12 14 8.5e-06 0.00062 20.7 2.9 1 23 505 527 505 527 0.98

13 14 0.016 1.1 10.4 1.2 1 23 533 556 533 556 0.96

14 14 0.16 12 7.2 0.1 2 22 671 690 670 690 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.6e-07	1.9e-05	25.5	2.7	2	23	176	198	176	198	0.96
2	14	0.0057	0.41	11.8	0.2	2	23	205	227	204	227	0.94
3	14	0.0043	0.32	12.2	2.8	2	23	234	256	233	256	0.93
4	14	1.2e-06	8.6e-05	23.4	0.6	2	23	264	286	263	286	0.96
5	14	7.4e-05	0.0054	17.8	1.2	1	23	292	315	292	315	0.95
6	14	0.00024	0.017	16.2	0.6	1	23	322	345	322	345	0.97
7	14	0.0001	0.0075	17.3	2.5	2	21	351	370	351	371	0.95
8	14	0.00041	0.03	15.4	3.5	1	23	387	410	387	410	0.96
9	14	0.011	0.81	10.9	0.5	5	23	423	442	420	442	0.92
10	14	3.3e-05	0.0024	18.9	0.4	2	23	448	470	448	470	0.97
11	14	0.17	13	7.2	3.4	2	23	478	500	477	500	0.91
12	14	8.5e-06	0.00062	20.7	2.9	1	23	505	527	505	527	0.98
13	14	0.016	1.1	10.4	1.2	1	23	533	556	533	556	0.96
14	14	0.16	12	7.2	0.1	2	22	671	690	670	690	0.91

Sequence Information

Coding Sequence: ATGGAAGAAGTATacataaaaacagaaaatataaaaattgaaatcgAGAGAGAACCTGATGACAATGAATATATCAGGTCTGAACAAAGCAATACAGCAGCCTCTTGTGAACAACAATTTAATACAAATACAGAAAATAACACTGAATACCAACACTCATGTACACAAAATTCTTACAATGATTTGGATAATAAACTGCCTAATACAGGGATATTGCAGCAAAATGAAAATACAGAAGCATGTTTACagaaaaatgtaaaatttgaaagtttacATCAATCTGCACATTTACAGCAAAATGAAAACACAGAAGCATGTTTACAGAAAAATGTAAATACAGAAGCATGTTTACAGAAAAATGTAAATACAGAAGCATGTTTACAGAAAAATGTAAATACAGAAGCATGTTTACAGAAACATGTGAAAACAGAAATTCTGCAGCAAAATATCGTAGAAGAATTACCGCAACCATCAAGCATAGACATTGTAGGGAAAGTATATGAGAATGGGAAAATAAATAGACCAAAATGCATGCAGTGTGGGAAATCATTTAAAAACAGATCAAATTTGAAGAACCACATGAAATATGTACACGCGGAGGACCAAACTGTGGAATGTACTGAATGCCTGCGAAGCTTCAAGTCCATACTGTATCTCCGGTCACATATGGGCTCGGTGCACGCTAAAACAGAATTAGTACAATGCGAACATTgccaaaaagtatttttaaacaagAAAAAGTTGAACAATCATATTTATTACACGCACAGGCAGCCAGAAGAACAAGTAACGTGTAAAGTGTGCTCCAAAACCTTTAAGGGACCGTACAATTTGAAAATCCATATGAGGTACGTCCACCCCCAGGGCGACCCCCACCCGTGCCCGTTCTGCTACAAAACTTTCAAAGTTGAAATGCTGTTGCAACGTCACATGAAATGGGCTCACCCAGACAACGGGATGACGTACAAATGTCAAGAGTGCAACAAAATGCTACCTTCCCTAGACGGATATAAAACTCACATGAAGAACGTGCATCTCTTCAACAGAGCCACGTGCGATTCCTGCAAACGTACTTTCAAAACTAAGAAATCTTTGGAACGACATATGAAGTTTGTCAGCTGTGGCAACAAACCGGCAGAAATGAACGTTCCTAAAGAACATACATGTCAATATTGTGAACGTACTTTCAATAACACAACATCTCTATTTTGGCATATAGAAAGGTTTCATGCTCAAATTGAGAAACTACccaataatatatgtattttatgtaataaggAATTTTCTGACTACGCAGCGTTGCATCGTCATTTGACCTCTGTGCATTCTCTAGAGACGGCCACTTGTAATATTTGCATGAAAGTGTTTAAATCTGCAATCAACCTCCAAAATCATATTAGGATAACTCACGCGCCACCGGAAGCCACACAGAAATGTGACACCTGTCAGAAGACTTTTAAATGTCCGTTGCATTTACGAATGCACGTTTTAGCTGTCCACGACGGGGGCGAGTACCCTTGTGACATCTGTCAAAAAACCTTCACATCAACCAAATacttgaacaaacacaaaaaatctCATATAGAATCGCGCGACTTTCAGTGCGACGTCTGTTTGAAAATGTACAAAAACATAAACTCTGTcaataaacataagaaacaaGTCCACAATGGCGTTAAATGCactatttgtaatataaaacaAGCAAATATAAATGATCATATGAGAAAATGTCACCCAGACGTTGCTTTGAATCTAACTATGGACTCTGTGAAAAGTTCGAATGAGACTATGGACTCTGCGAAGAGTTCTTATGAGACTATGGACTATGTGAAAAGTTCGAATGACACTATGGACTCAGTTAAACGTTCGAATGAGAATATGGACTCTTTGAAAAGTTCGTATGAGACTATGGACTATGTGAAAAGTACGAATTACAGTATGGATGGTATGAAAAGCACGAATTTAACTATGGACTCAGTGAAAAGTGAGATAAAAATAGATGAAATAACATGTAGCGTTTGTGACAAGAGTATAGATAGTTCAGAGTTCAATGAACATGCTAAAACTTGTGAACGCCCCCCGATACTTGAAGTGACTATTAAAATGGAAATAGATGAAACATGA
Protein Sequence: MEEVYIKTENIKIEIEREPDDNEYIRSEQSNTAASCEQQFNTNTENNTEYQHSCTQNSYNDLDNKLPNTGILQQNENTEACLQKNVKFESLHQSAHLQQNENTEACLQKNVNTEACLQKNVNTEACLQKNVNTEACLQKHVKTEILQQNIVEELPQPSSIDIVGKVYENGKINRPKCMQCGKSFKNRSNLKNHMKYVHAEDQTVECTECLRSFKSILYLRSHMGSVHAKTELVQCEHCQKVFLNKKKLNNHIYYTHRQPEEQVTCKVCSKTFKGPYNLKIHMRYVHPQGDPHPCPFCYKTFKVEMLLQRHMKWAHPDNGMTYKCQECNKMLPSLDGYKTHMKNVHLFNRATCDSCKRTFKTKKSLERHMKFVSCGNKPAEMNVPKEHTCQYCERTFNNTTSLFWHIERFHAQIEKLPNNICILCNKEFSDYAALHRHLTSVHSLETATCNICMKVFKSAINLQNHIRITHAPPEATQKCDTCQKTFKCPLHLRMHVLAVHDGGEYPCDICQKTFTSTKYLNKHKKSHIESRDFQCDVCLKMYKNINSVNKHKKQVHNGVKCTICNIKQANINDHMRKCHPDVALNLTMDSVKSSNETMDSAKSSYETMDYVKSSNDTMDSVKRSNENMDSLKSSYETMDYVKSTNYSMDGMKSTNLTMDSVKSEIKIDEITCSVCDKSIDSSEFNEHAKTCERPPILEVTIKMEIDET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -