Basic Information

Insect: Agriopis leucophaearia
Gene Symbol: -
Assembly: GCA_949125355.1
Location: OX421288.1:3629077-3630996[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.098 7.2 7.9 1.6 1 23 26 48 26 48 0.97

2 18 1.5 1.1e+02 4.2 0.6 2 15 76 89 75 98 0.79

3 18 0.012 0.86 10.8 0.4 1 23 118 141 118 141 0.94

4 18 8.1e-06 0.00059 20.8 1.0 1 23 145 168 145 168 0.94

5 18 9.3e-06 0.00068 20.6 1.8 1 23 172 195 172 195 0.95

6 18 0.29 21 6.5 2.4 5 23 201 220 198 220 0.91

7 18 0.15 11 7.4 0.1 2 19 227 244 227 246 0.89

8 18 2 1.4e+02 3.8 1.9 2 23 297 319 296 319 0.94

9 18 0.35 25 6.2 0.5 2 23 342 364 341 364 0.96

10 18 0.0032 0.23 12.6 0.4 1 23 385 408 385 408 0.97

11 18 0.0074 0.54 11.5 4.8 3 20 416 433 415 436 0.94

12 18 0.00091 0.067 14.3 0.4 1 23 443 466 443 466 0.87

13 18 5.8 4.3e+02 2.4 1.7 2 23 472 494 471 494 0.91

14 18 2.4e-05 0.0017 19.3 1.0 1 23 498 521 498 521 0.98

15 18 2.8e-07 2e-05 25.4 1.0 2 23 528 549 527 549 0.97

16 18 1.7e-06 0.00012 22.9 0.4 1 23 555 577 555 577 0.98

17 18 3.8e-05 0.0027 18.7 5.7 1 23 583 605 583 605 0.97

18 18 1.6e-05 0.0012 19.9 3.2 1 23 611 633 611 633 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.098	7.2	7.9	1.6	1	23	26	48	26	48	0.97
2	18	1.5	1.1e+02	4.2	0.6	2	15	76	89	75	98	0.79
3	18	0.012	0.86	10.8	0.4	1	23	118	141	118	141	0.94
4	18	8.1e-06	0.00059	20.8	1.0	1	23	145	168	145	168	0.94
5	18	9.3e-06	0.00068	20.6	1.8	1	23	172	195	172	195	0.95
6	18	0.29	21	6.5	2.4	5	23	201	220	198	220	0.91
7	18	0.15	11	7.4	0.1	2	19	227	244	227	246	0.89
8	18	2	1.4e+02	3.8	1.9	2	23	297	319	296	319	0.94
9	18	0.35	25	6.2	0.5	2	23	342	364	341	364	0.96
10	18	0.0032	0.23	12.6	0.4	1	23	385	408	385	408	0.97
11	18	0.0074	0.54	11.5	4.8	3	20	416	433	415	436	0.94
12	18	0.00091	0.067	14.3	0.4	1	23	443	466	443	466	0.87
13	18	5.8	4.3e+02	2.4	1.7	2	23	472	494	471	494	0.91
14	18	2.4e-05	0.0017	19.3	1.0	1	23	498	521	498	521	0.98
15	18	2.8e-07	2e-05	25.4	1.0	2	23	528	549	527	549	0.97
16	18	1.7e-06	0.00012	22.9	0.4	1	23	555	577	555	577	0.98
17	18	3.8e-05	0.0027	18.7	5.7	1	23	583	605	583	605	0.97
18	18	1.6e-05	0.0012	19.9	3.2	1	23	611	633	611	633	0.98

Sequence Information

Coding Sequence: ATGAAACAAAGACGCCGAAACCTCgagattttatttaactatacTACGATCATTCCTATAAAAATTCTGGGAAAGTATCGTTGCTTTTTCTGCGAAACTAAGCTAAAAGACCGGCAACAGTTGGTAGACCATAATGAGACTCACCTTCCGTGTAGCACTAACGATAACGCCCTGAAGGGTCTACGAGGACTAGAATGGAAAATCAATGTTGACGTGTctgaaataaaatgtaaagTTTGCTCTGAACAGTTCAAGAATATCGACGATATAGAGTTCCATCTGGCTCATAAACACAGCTTACCCTACGACCCGAATATAACAATTCCTTTCGGTCCATATAGACTGATTGATTTCAAGTGTATAGTTTGTGATAAAGATTTAAAGAATTTAAGAACCTTAACCATACACATGAAAGATGAACATCTGGAGCATTACGAATGCGACGATTGTGGTAAAAAGTTTAGTCAAAGGAACTTCTTGCGAAGTCACGTCATACAACAACACAAAGAAGAATATAGATGTACTAAATGTCCGAAGAGTTTCAAATCTAAAGCAGATTATGTTAGGCATAAGAATGAAGATCACATCGCCCATTGCATATTGTGTTTCAAAACCTTTTCGACATCCGCGTTGCGATTCACCCACATGAAGGCCGAACATAATGTATCTCAAGGGGGCACTTGTGGATTTTGCAACAAGAACTTTAGCTCGAGGACTGGCATTCTAGCACACGCCGAACTATGCTCTGTTGAAGACCGTAATAAGACTAATGTAGATGAAATAGTTACAGAGGTGGATATAGATAATGTCAcaactatcaaacaaaaaatgaccTTTGTACTAAACAACACTACTCTAACTCcttttaaatatacctactatatgaTCAAATGTTTCTTTTGTTCAGAAAGGTTCCTCAGTTCTCAAGATTTCAGGAATCATTCAACAACAGAACATGCCGATTGTAATGTTGTTTTGAAAGGCACTAATTTAAAGTATTTAACAGTAGACTCTTCAATTCTGCAGTGCAAATTGTGTCACAACCAATCCGAGGACTTAAACACCTTGGTGGCTCATTTGGAAACTGAACACGAGGCGAAGCTTGGTAACTGTGTTGACAAATTCCTGCCTTTTAAACTGATAGACGACAACTATCCGTGCCCGCAGTGCAGTGATGTGTTCTCACGCTTGTATGACATGTTCAGCCATTACAATAAAGCGCATAGTGCATCGAACAGGGTTCTATGCTTGCACTGCGGTGAATCATTCTGTAACGAAGATTTGTTACAGAAACATTTAATTTGCCATCAAACAGGAGAGGATCGCTTCAAATGTACCGAATGTGACCGCGCATTTATCAATAAAAGCAGACTGACATTTCATTTAGGAATCGCTCATGATAAAAAAGTCATCAAATGCTCTCATTGCTCTGAGTGGTTCGTATCTAACCATGCAAAAATGATGCACGTTATCAAAGAACATGACGGGGGCTATGTATGCACTTATTGTGGAGTGTCTTTTGGAACCCAGCATTACATGGCTAAACACGTGAGAAGTGTACATCTCAAAGAAAAGAACTTAACGTGTCCGTATTGCAATAGGGCGTTTTTCGACAAATACGGCTTGAAAAAGCACATTCGTACGCACACTGGCGAAAAGCCTTATAGTTGTGAATATTGCGGCAAAACATTTGTTGCTAAACAGACGCTGACTAGCCATATGATTGTGCATACTGATGAGAAACCGTTCAGGTGTCAGTGCTGTGACAAGATGTTTAAAAATAGATACAATTTGAAACAACATATGAACATCCATATGCCAGAGCGAGTATTCATATGTGACTATTGTGGCAAGCGATGTTCGTGGAAACAGAATCTGCGCAAACACATGAGGGTGCATTTTGATAATGCAGCCCAGTAA
Protein Sequence: MKQRRRNLEILFNYTTIIPIKILGKYRCFFCETKLKDRQQLVDHNETHLPCSTNDNALKGLRGLEWKINVDVSEIKCKVCSEQFKNIDDIEFHLAHKHSLPYDPNITIPFGPYRLIDFKCIVCDKDLKNLRTLTIHMKDEHLEHYECDDCGKKFSQRNFLRSHVIQQHKEEYRCTKCPKSFKSKADYVRHKNEDHIAHCILCFKTFSTSALRFTHMKAEHNVSQGGTCGFCNKNFSSRTGILAHAELCSVEDRNKTNVDEIVTEVDIDNVTTIKQKMTFVLNNTTLTPFKYTYYMIKCFFCSERFLSSQDFRNHSTTEHADCNVVLKGTNLKYLTVDSSILQCKLCHNQSEDLNTLVAHLETEHEAKLGNCVDKFLPFKLIDDNYPCPQCSDVFSRLYDMFSHYNKAHSASNRVLCLHCGESFCNEDLLQKHLICHQTGEDRFKCTECDRAFINKSRLTFHLGIAHDKKVIKCSHCSEWFVSNHAKMMHVIKEHDGGYVCTYCGVSFGTQHYMAKHVRSVHLKEKNLTCPYCNRAFFDKYGLKKHIRTHTGEKPYSCEYCGKTFVAKQTLTSHMIVHTDEKPFRCQCCDKMFKNRYNLKQHMNIHMPERVFICDYCGKRCSWKQNLRKHMRVHFDNAAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00034009;
90% Identity: iTF_00034009;
80% Identity: -