Basic Information

Insect: Agriopis leucophaearia
Gene Symbol: -
Assembly: GCA_949125355.1
Location: OX421288.1:2897830-2901946[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2.7 2e+02 3.4 1.0 1 23 18 40 18 40 0.93

2 16 0.04 2.9 9.2 0.0 2 23 64 86 63 86 0.94

3 16 0.031 2.2 9.5 0.1 2 23 200 222 199 222 0.92

4 16 0.00011 0.0077 17.3 0.4 1 23 243 265 243 265 0.97

5 16 8.4e-05 0.0062 17.6 0.1 1 23 269 291 269 291 0.96

6 16 0.00057 0.042 15.0 0.6 1 23 298 321 298 321 0.97

7 16 0.033 2.4 9.4 0.7 1 13 326 337 326 342 0.79

8 16 0.11 8 7.8 0.0 2 23 426 448 425 448 0.92

9 16 8.7e-05 0.0064 17.5 0.1 1 23 469 491 469 491 0.97

10 16 0.00017 0.012 16.6 0.0 1 23 495 517 495 517 0.97

11 16 0.00054 0.039 15.1 2.3 1 23 524 547 524 547 0.96

12 16 0.026 1.9 9.8 3.4 1 23 552 575 552 575 0.96

13 16 0.00037 0.027 15.6 0.1 1 23 581 604 581 604 0.97

14 16 0.0027 0.2 12.8 0.4 1 23 610 632 610 632 0.96

15 16 8.3e-07 6.1e-05 23.9 1.2 1 23 638 660 638 660 0.99

16 16 9.2e-05 0.0067 17.5 5.3 1 23 666 688 666 689 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2.7	2e+02	3.4	1.0	1	23	18	40	18	40	0.93
2	16	0.04	2.9	9.2	0.0	2	23	64	86	63	86	0.94
3	16	0.031	2.2	9.5	0.1	2	23	200	222	199	222	0.92
4	16	0.00011	0.0077	17.3	0.4	1	23	243	265	243	265	0.97
5	16	8.4e-05	0.0062	17.6	0.1	1	23	269	291	269	291	0.96
6	16	0.00057	0.042	15.0	0.6	1	23	298	321	298	321	0.97
7	16	0.033	2.4	9.4	0.7	1	13	326	337	326	342	0.79
8	16	0.11	8	7.8	0.0	2	23	426	448	425	448	0.92
9	16	8.7e-05	0.0064	17.5	0.1	1	23	469	491	469	491	0.97
10	16	0.00017	0.012	16.6	0.0	1	23	495	517	495	517	0.97
11	16	0.00054	0.039	15.1	2.3	1	23	524	547	524	547	0.96
12	16	0.026	1.9	9.8	3.4	1	23	552	575	552	575	0.96
13	16	0.00037	0.027	15.6	0.1	1	23	581	604	581	604	0.97
14	16	0.0027	0.2	12.8	0.4	1	23	610	632	610	632	0.96
15	16	8.3e-07	6.1e-05	23.9	1.2	1	23	638	660	638	660	0.99
16	16	9.2e-05	0.0067	17.5	5.3	1	23	666	688	666	689	0.96

Sequence Information

Coding Sequence: ATGATTTTAAAGTTTTCTAACGTATGTCCGTtcaaattttatcgaaatataTTCTGTTGTGCGTACTGTCCTTATACGTCGCCAGATTTTGGCCCTATCAAAAGCCATACCAAAGAACACAAGGATAGAGCTTTGGCTGTTCGCAACTTGGATTGCTCTTTAGTATGCAAGGTAGACGTGACAGATCTTAAATGTGAGATCTGCCAGGAAGTCATAACAGATATATCGACGCTGTTGGAACATCTTATCAATACACATAACAAACCATTAAAAAGAAATTTCAGACCTGGAGTCGTGCCTTTCCTGTTGAATGATGGGTTCGCGTGCGCAGAGTGCGGAGCCATCTCCATAAAATGGACCTCCCAGGATTCACACAAAGACTTTGGAGACGCTCGGGACAACGCAGCTTTAATACTGGAGCTTTCTAACGTTTGTCCGTTTAAATTTCACGGAAACACATTCGGCTGTGCGTACTGTACTTATACGTCGCCAGATTTCGGTCCTATCAAGAGTCATACCGTAGAGCACAAAGATCGAGCCAAAGCGCGTCGCAACATGAAACCAACATCTGTGTGTAAGGTAGACGTAACAGATCTGAGATGTGAAATTTGTCAAGAAAGCATCAAAGATATGTCGACACTGTTTGAACACCTTATCGCAACGCATAACAAACTTTTAAATAGAAATTTCAAACCCGGCGTTATACCTTACCTTTTAAGTGATGGTTTCGCATGCGCCGACTGTGGTCTTAAATTCGATCTGTTTCGGAACTTAAATTCCCACATGAATACACACTACCCACATTTCATCTGCTCCGACTGCGGCCAAGCTTTTACTAACGAAGAACGATTAAAAGCTCATGTATTTATTCACCAAAAAATTTCGAAAACATTTAAGTGTACGAAATGCGATGAACCGTTCCCTACCGTTGCTAGCAAACGAAAACACATGGCATCTAAGCACAACATCTTTGCTCACAAATGTCCTTACTGCAATGAATCATTCAAAGAACATCACCTTAGAGTAggaaCCGTCGCCATAAAGTGGCCCGCAAAAGATTATGGAGACGCGCGAGACAATGCTGCCataattttgaagttttctaACGTTTGTGCGTTCAAACTGCACCGAAACACATTCGGCTGTGCGTACTGTCCTTACACGTCGCCTGATTTCGGCCCTATCATGAGCCATGCCAAAGAACATAAGGATAGAACTCTGGCTGTTCGCAACGTAGATAGTTCTTCAGTGTGCAAGGTAGACGTGACAGACTTAAGATGTGAGATCTGTCAGGAAGCTATAAAAGATTTAGCGACGCTGTTTGACCATCTAATCGAAGTACACAACAAACCTTTAAAAAGAAATTTCAGATTTGGAGTCGTGCCTTACTTGTTGAATGACGGGTTCGCCTGCGCCGATTGTGGTGCAACGTTCGATGTGTTCAGGAACTTGAATTCCCATATGAATGTACACTACCCACATTTTGTCTGTTCTGATTGCGGCCAAGGTTTTATAACCGAGGAACGATTAAGAGCTCACGTAATCGTACACCGAAAAACATCAAAAACACACAAATGTAAGAAATGTGATGAATCATTTCCTACTCTAGCAAGCAGACGCACTCACATGGCATCCAAGCATAACATATTTGCTCACAAATGTCCTTACTGCACCGAATCATTTCAAAATAATCGCGTCAGGGTAagacatttaaataagtatcacAATAAGAATATAACTTACCCTTGTTCGATGTGTCCTAAAGTTTTCACGATTGCTTCAAATCGTTCTGAACATGTAAGGAGTGTACATAAAAAAGAGAGACGTTTTGCTTGCACAGTCTGTGGAGATATGTTCATTCATGCTTACGTATTGAAGAACCACATGGTAAAGCATGGCGGGGAAAAGAAGTATCAGTGCCAAGTGTGCAAGAAAGCCTATGCGAGGAAAAAGACGTTGACAGAGCACATGCGTATACACAACGACGACAGGAGATTTGTTTGTGTGCATTGTGGTAAAGCATTTGTGCAGAAATGCAGCTTGAAGGGACATGTGAAGACTCATCATTCTGACGCTGTGTTTGGTGATAGAGTGGTTAATGACCTCGCAAACGATGCCTGTTAA
Protein Sequence: MILKFSNVCPFKFYRNIFCCAYCPYTSPDFGPIKSHTKEHKDRALAVRNLDCSLVCKVDVTDLKCEICQEVITDISTLLEHLINTHNKPLKRNFRPGVVPFLLNDGFACAECGAISIKWTSQDSHKDFGDARDNAALILELSNVCPFKFHGNTFGCAYCTYTSPDFGPIKSHTVEHKDRAKARRNMKPTSVCKVDVTDLRCEICQESIKDMSTLFEHLIATHNKLLNRNFKPGVIPYLLSDGFACADCGLKFDLFRNLNSHMNTHYPHFICSDCGQAFTNEERLKAHVFIHQKISKTFKCTKCDEPFPTVASKRKHMASKHNIFAHKCPYCNESFKEHHLRVGTVAIKWPAKDYGDARDNAAIILKFSNVCAFKLHRNTFGCAYCPYTSPDFGPIMSHAKEHKDRTLAVRNVDSSSVCKVDVTDLRCEICQEAIKDLATLFDHLIEVHNKPLKRNFRFGVVPYLLNDGFACADCGATFDVFRNLNSHMNVHYPHFVCSDCGQGFITEERLRAHVIVHRKTSKTHKCKKCDESFPTLASRRTHMASKHNIFAHKCPYCTESFQNNRVRVRHLNKYHNKNITYPCSMCPKVFTIASNRSEHVRSVHKKERRFACTVCGDMFIHAYVLKNHMVKHGGEKKYQCQVCKKAYARKKTLTEHMRIHNDDRRFVCVHCGKAFVQKCSLKGHVKTHHSDAVFGDRVVNDLANDAC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -