Aleu012040.1
Basic Information
- Insect
- Agriopis leucophaearia
- Gene Symbol
- -
- Assembly
- GCA_949125355.1
- Location
- OX421272.1:15292286-15302131[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.51 37 5.7 2.3 1 21 14 34 14 35 0.95 2 20 0.44 32 5.9 0.1 8 23 56 71 55 71 0.91 3 20 0.00031 0.023 15.8 0.3 1 23 85 107 85 107 0.94 4 20 0.3 22 6.4 1.0 5 23 115 134 112 134 0.94 5 20 0.42 31 5.9 0.1 1 23 224 247 224 247 0.95 6 20 0.0087 0.64 11.2 0.1 1 23 255 277 255 277 0.99 7 20 2.3e-05 0.0017 19.4 1.0 1 23 282 304 282 304 0.98 8 20 4.1e-06 0.0003 21.7 0.2 1 23 310 332 310 332 0.98 9 20 9.9e-08 7.2e-06 26.8 0.4 1 23 338 360 338 360 0.98 10 20 1.1e-05 0.00079 20.4 1.3 1 23 366 388 366 388 0.98 11 20 0.002 0.14 13.3 3.6 3 23 395 416 394 416 0.94 12 20 0.00031 0.023 15.8 6.7 1 23 425 448 425 448 0.96 13 20 1.3e-05 0.00097 20.1 0.4 2 23 456 478 455 478 0.97 14 20 0.00042 0.031 15.4 0.8 2 23 486 508 485 508 0.95 15 20 0.22 16 6.8 2.6 1 23 514 537 514 537 0.94 16 20 4.5 3.3e+02 2.7 3.0 1 23 546 569 546 569 0.92 17 20 0.006 0.44 11.8 1.7 2 20 573 591 572 593 0.93 18 20 3.7e-05 0.0027 18.7 0.2 2 23 597 619 597 619 0.95 19 20 0.004 0.29 12.3 2.8 1 23 628 650 628 650 0.98 20 20 0.0072 0.53 11.5 0.8 1 20 657 676 657 676 0.96
Sequence Information
- Coding Sequence
- ATGCAAAGTTGCTGTGTAAAATtgaatcaaattgaaatatttaaatgtgaCTTTTGCATTTGTTGCTTTCCCGATGTCGGAATGTTGAAAGCacatcaaaataaatgtttaaataaaaaaaataaaaatcaggtAAATGAAAGCAGCCAAGAGTTCGCTTCTTACAAGACATTACCATCACAATCAGATCTTGTCAAACACATGGAAAGTCACACTCTGCAGTTGGATCATAACAACAATAATCAAAAGCCTTTTAAATGCGAAGTGTGTGGATGGAGGTTTATGAAGGAGAGTACTCTTGAAGCTCACTCCACACTCCACGAACCATTCCCACATATATGTGAGTGTGGCATTGGATACTACCAAAGATGCGATCTGAACGCCCATCGGAAACTGGTCCATCCAAACTACAAGCCTCTACCACTCAAAGTCAAACAAGAAACTAAACCAGAATCTAAAGCCTCTACCCAATTGAAACCCCATAATAAACTAGGACCCAGACTAAAAGCCACTTTAACATTTAAGCAACCTAAGACTAAAACGAAGAAACTAAAGCGTCTTAAAGGAGGTAGAACAAACAAACTGCATCGTAAAAGTGAAAACCCAATCAAACAAAAAGGTGTTAAAAgcgaaataaaaatgaaactaGAAACTGACGAGAATGGCAATTACGCTTGTACTCTATGCGCACAAACATATCTTGACATTGTTGATTTGAGGTCACACATGCTCAAAGATCACACTGAAAAGGATGCCGGTAAATACAAATGCAATGCTTGCGGCAAAGAAGCAGTATATCTCAGCAAATTGGGAGAACACATGCTCAGACATGCAGGTATGGCTTATGTCTGTCACATTTGCAATGGAAGATTCTCACAATCAGGGGCACTGAACCTGCATCTTAAAAGACACGCTGGTGATAAACAATTTCCATGCAAGGAGTGCgataaaagtttttataacGCTGCAGCCCTCAGGCTCCATTCAAGAGTTCACACTGGGGAGAAGCCATTTGAATGCAAACAGTGCGGGAAGAGCTTCAGCGACCCTTCTGCTTACAGACGTCACTTGATCATACACACAGGCCTACAGCCATATAAGTGTCAGAGGTGCCCAAAAGCATTTTGCGACCCAGCTGCGCTATTCAGACATAATCGTATTCATGATGGCTACAAAGCATCATGCTTTATATGCAACAGAACATTTTCCTCTACAGACTCTATGCGCAAGCATCACAAACTAGCCCATACCAAATTGAGAGACGAAGACAAATTTGAATGCGACCATTGCGGCATCAAGTGCACCCGGAAACACAATCTAGTGAAGCACACAAAAAATGTACATATGAATCCGACTCCTAGTGTAGAATGTGAGATCTGTTTTAAAAAGTATACAACCAAAAGTTATCTAATGGCGCACGTGAAAACAGTACATTTGAATCTCACTTCTGAGGTCGAATGTGAAATCTGTTGTAAGAAGTATGTTAGTGCCGACAATCTTAAGAAGCACATGCAATTAGTACATCTTAAAATTACCAGGTTTGAATGTAAAATATGCGGAGCGCGCTTTCTAAATAAATGTGTGttgaaatatcataaaaaaaatgctcacAGGTCCAAAACAATGCACAAGatctatgaatgtgaccactgCTGTAAATTGTTCTCTTCCAAACAGATTTTAGCAATGCACATAGTAAAAAGTCATTTAGGTATCAAATGTCTAATATGCAAAAAGACTTTTACGACGTCCCTTAGATTGAAACACCACAAATCTGAAGGATGTAGGCGTTGTACGGTTTGCAACAAGGCTTTCAAGACTCCTAATGCATTGGAGCAACATTACATTGTTACACACTTACATAAAAGTGATCGGCAAATGTATGAATGTGATTACTGTAGGAAACAATTTCCTCTTAAGTGTAGACTGTTAAATCACATCAAGATTCACATTCAGCCAGCAGATTCTTTTCACTGTGACCACTGCAGTGAGGTTTTCCCTAGAAAGAAGGCGGTCGAAACCCATATTTGGGACAAGCACATGATTAGTCTATACTGTAACATTTGCTTGAAGGGGTTTTACAGGGATTGGGTAAAGTTGGATGTAGAGTGTGCGGTGTGGTTGCGGTGTTCCGTTGACGCGCCGCGCCGGGCGCGCCGCTCGATACGCGCGCGCCGTGCGGCCCGCGCGGCATCGACCCCTGTCTGGCCTCAGCCCCCAGTGCTCTCAGAACTTACCGACAAGCAACTCACCCTCGCTTAA
- Protein Sequence
- MQSCCVKLNQIEIFKCDFCICCFPDVGMLKAHQNKCLNKKNKNQVNESSQEFASYKTLPSQSDLVKHMESHTLQLDHNNNNQKPFKCEVCGWRFMKESTLEAHSTLHEPFPHICECGIGYYQRCDLNAHRKLVHPNYKPLPLKVKQETKPESKASTQLKPHNKLGPRLKATLTFKQPKTKTKKLKRLKGGRTNKLHRKSENPIKQKGVKSEIKMKLETDENGNYACTLCAQTYLDIVDLRSHMLKDHTEKDAGKYKCNACGKEAVYLSKLGEHMLRHAGMAYVCHICNGRFSQSGALNLHLKRHAGDKQFPCKECDKSFYNAAALRLHSRVHTGEKPFECKQCGKSFSDPSAYRRHLIIHTGLQPYKCQRCPKAFCDPAALFRHNRIHDGYKASCFICNRTFSSTDSMRKHHKLAHTKLRDEDKFECDHCGIKCTRKHNLVKHTKNVHMNPTPSVECEICFKKYTTKSYLMAHVKTVHLNLTSEVECEICCKKYVSADNLKKHMQLVHLKITRFECKICGARFLNKCVLKYHKKNAHRSKTMHKIYECDHCCKLFSSKQILAMHIVKSHLGIKCLICKKTFTTSLRLKHHKSEGCRRCTVCNKAFKTPNALEQHYIVTHLHKSDRQMYECDYCRKQFPLKCRLLNHIKIHIQPADSFHCDHCSEVFPRKKAVETHIWDKHMISLYCNICLKGFYRDWVKLDVECAVWLRCSVDAPRRARRSIRARRAARAASTPVWPQPPVLSELTDKQLTLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -