Basic Information

Insect: Agrilus mali
Gene Symbol: -
Assembly: GCA_029378335.1
Location: CM055659.1:24624417-24627417[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.016 1.5 10.4 0.3 3 23 156 176 155 176 0.97

2 14 0.87 85 4.9 0.3 1 23 208 230 208 230 0.95

3 14 0.082 8 8.1 3.3 1 23 236 259 236 259 0.96

4 14 0.0011 0.1 14.1 0.4 1 23 265 287 265 287 0.97

5 14 0.014 1.3 10.6 1.3 1 23 296 318 296 318 0.96

6 14 2.7e-06 0.00026 22.3 3.2 1 23 324 346 324 346 0.99

7 14 0.65 64 5.3 4.4 1 22 352 373 352 373 0.96

8 14 0.0012 0.12 13.9 0.4 3 23 529 549 528 549 0.98

9 14 0.008 0.78 11.3 0.3 1 23 581 603 581 603 0.97

10 14 0.049 4.8 8.8 5.0 1 23 609 632 609 632 0.97

11 14 0.0051 0.5 11.9 0.2 1 23 638 660 638 660 0.96

12 14 0.0011 0.11 14.0 2.6 1 23 670 692 670 692 0.98

13 14 2.8e-07 2.7e-05 25.4 2.2 1 23 698 720 698 720 0.99

14 14 0.00092 0.09 14.3 4.1 1 22 726 747 726 747 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.016	1.5	10.4	0.3	3	23	156	176	155	176	0.97
2	14	0.87	85	4.9	0.3	1	23	208	230	208	230	0.95
3	14	0.082	8	8.1	3.3	1	23	236	259	236	259	0.96
4	14	0.0011	0.1	14.1	0.4	1	23	265	287	265	287	0.97
5	14	0.014	1.3	10.6	1.3	1	23	296	318	296	318	0.96
6	14	2.7e-06	0.00026	22.3	3.2	1	23	324	346	324	346	0.99
7	14	0.65	64	5.3	4.4	1	22	352	373	352	373	0.96
8	14	0.0012	0.12	13.9	0.4	3	23	529	549	528	549	0.98
9	14	0.008	0.78	11.3	0.3	1	23	581	603	581	603	0.97
10	14	0.049	4.8	8.8	5.0	1	23	609	632	609	632	0.97
11	14	0.0051	0.5	11.9	0.2	1	23	638	660	638	660	0.96
12	14	0.0011	0.11	14.0	2.6	1	23	670	692	670	692	0.98
13	14	2.8e-07	2.7e-05	25.4	2.2	1	23	698	720	698	720	0.99
14	14	0.00092	0.09	14.3	4.1	1	22	726	747	726	747	0.95

Sequence Information

Coding Sequence: ATGGCCCGCCCTGTATATATTAAGGATCATATGGAATGTGTTCTGGAAGATTGGaagataaaaattgaatttgcgGAATGTAAAATTGAAGAACCATGGGATGATGAAGCTTCAGTAGAAGAACCATTGAATGATGAAACTTTACTAGAAGAACCCTTGATTGACGAGGCTTCGGTAGAGGAGCCGTTGAATGATAGAGCTTCAATAGAAGAAATAATGAACGAGGTATCAGCCGGTGTCGTGTACTGTTCCATATGCCCAGTTCAAAGATTTGATAGCGAAGATCAACATCAAAGATACGTCGCTtctaaagaaacaaaaaaattttattgtcgaGCACATTCATCGTGTAccgaaaaattcacaaaacacGAACTGGCCAAACACTACTACGAACACGGAatcaaagtaaaaaattggaaaacattttttcgtAGGGCATTCCAAGAGCGTACTGAGGAAGCATGCGAAATATgttttgaattgtttgaaaataaaactacttTAGAAACCCATTATGAATCTCACGAAGACCAACACACTTGCCAAATATGCATAGttggttttaaaaaagtaatggaTTACGTTTGTCATGCACAAAAGCACCATGACAAAGGACTGTTCACGTGTCCAGTTTGTAGAGTTCAAATGAAAAAAAGTGGTCCTATGAAAAAACACATTGAGAATCATGATCAGTTCAAACGATTCAAGTGTAAAATGTGCGACAGTCGATTCCCATACTACTCGAAATATTACGAACATACACAAAATTCCCACAATGACACAAGAACCTTCGAATGTGACATTTGCGGTGAAGTATTGAGTTCTTTGGGTACATTGTGTCAGCATAACCTCAAGCACGTGCAAGACGAAGGCGATAGACAGTACAATTGTTCGTATTGCgacaaaaagtttttgacaAAATACGGAAAGATTGTACATGAACGAATTCATACGGGAGATAAGCCATACAAATGCCCTTATTGTACGAAAACTTTTAGGCAAAGCAGCAGCATGTATGTGCATTCTCGGACACATACAGGCGAAAAGCCGTATTCATGTCATTTCTGTGGAAGCCGATTTATTTGTAAACCGTATCTTAAGACCCATTTAAAAACTtgtagaaaaaagGAAACTTGGAGGGTAAAAATTGAAGTCGCAGATTGTAAAATAGAAGAACCATGGGATGATGATGAAGCTTCAGTAGAAGAACCGTTTAATGATGACGATTCAGTAGAAGACCCATTAAGTGATAAAGCTTCAATAGAAGAACCACTGAACGATAAAACTTTAATAGAAGAACCGTTGAATGATAAAGCTTCAATAGAAGAGATAATGAGTGAAGTAGCAGCTGGTGTCGTGTACTGTTCCATATGCCCAGTTCAAAGATTTGATAGCGAAGATCAACATCAAAAATATGTCGCCTCaagtgaaacaaaaaagttttattgtcAGACCCATTCATCGTGTACAggaaaattcacaaaacacGAACTGGCCAGACATTACTACGAACatggaataaaaataaacaattggaATAGATTTTTCCCAAAGGCATTACACGAACGGACGGAAGAAGCATGCGAAATATGTttcgaattgtttaaaaataaaaacgatttaaaaattcattacgAAACTCACGAAGTCCAGCACACTTGCAAAATATGTAAAGttggttttaaaaaagtaatggaTTACGTTTGTCATGCACAAACGCACCACGAGAAAGGATTGTTTACATGTCCTCTCTGTGATGTTACATTGAAAAAAAGAACTCCTATGCAGAGACATATTGAGAATCATGATCAATACAAACGGTACAGGTGTAAAAAGTGCGACAGTCGATTCCCGTATTATTCGAAATATCATGAACATATACAAAATTACCACAGTGACACAAAGACTTTCGAATGTGATATTTGCAGTGAAACATTCCCTACAGTAGGTAAATTAAGTCTTCACAAAGTCAAGCACCTTATGGTACATAAGGGCGATAAGCGGTTCAAATGTTCGTACTGTGACAAAAAGTTCATGAAAAATTACGAGAGGAGTGTACACGAACGAGTTCACACGGGGGATAAACCGTACAAATGTCCTTATTGTACAAAGTCGTTTAGTCAAAGCAGCAACATGATCATGCACTCTCGTACTCATAGGGGCGAGAAGCCTTATATCTGTCACTTGTGTGATTGCGGGTTTACTACTAAACGTTATCTCaataatcatttaaaaaagtgtagataa
Protein Sequence: MARPVYIKDHMECVLEDWKIKIEFAECKIEEPWDDEASVEEPLNDETLLEEPLIDEASVEEPLNDRASIEEIMNEVSAGVVYCSICPVQRFDSEDQHQRYVASKETKKFYCRAHSSCTEKFTKHELAKHYYEHGIKVKNWKTFFRRAFQERTEEACEICFELFENKTTLETHYESHEDQHTCQICIVGFKKVMDYVCHAQKHHDKGLFTCPVCRVQMKKSGPMKKHIENHDQFKRFKCKMCDSRFPYYSKYYEHTQNSHNDTRTFECDICGEVLSSLGTLCQHNLKHVQDEGDRQYNCSYCDKKFLTKYGKIVHERIHTGDKPYKCPYCTKTFRQSSSMYVHSRTHTGEKPYSCHFCGSRFICKPYLKTHLKTCRKKETWRVKIEVADCKIEEPWDDDEASVEEPFNDDDSVEDPLSDKASIEEPLNDKTLIEEPLNDKASIEEIMSEVAAGVVYCSICPVQRFDSEDQHQKYVASSETKKFYCQTHSSCTGKFTKHELARHYYEHGIKINNWNRFFPKALHERTEEACEICFELFKNKNDLKIHYETHEVQHTCKICKVGFKKVMDYVCHAQTHHEKGLFTCPLCDVTLKKRTPMQRHIENHDQYKRYRCKKCDSRFPYYSKYHEHIQNYHSDTKTFECDICSETFPTVGKLSLHKVKHLMVHKGDKRFKCSYCDKKFMKNYERSVHERVHTGDKPYKCPYCTKSFSQSSNMIMHSRTHRGEKPYICHLCDCGFTTKRYLNNHLKKCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -