Basic Information

Insect: Agrilus mali
Gene Symbol: RREB1
Assembly: GCA_029378335.1
Location: CM055655.1:35218513-35225863[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.2e-05 0.0012 20.2 1.7 1 23 90 112 90 112 0.98

2 16 0.0018 0.18 13.4 0.7 1 23 125 147 125 147 0.97

3 16 4.1e-05 0.004 18.5 4.4 1 23 153 175 153 175 0.99

4 16 9.6 9.4e+02 1.6 0.1 1 21 256 277 256 280 0.73

5 16 0.055 5.4 8.7 2.1 2 23 286 308 285 308 0.94

6 16 1 1e+02 4.7 2.5 1 20 356 375 356 377 0.88

7 16 0.1 10 7.8 0.1 1 23 519 541 519 541 0.96

8 16 1.2e-05 0.0011 20.3 0.8 1 23 550 572 550 572 0.99

9 16 0.0012 0.11 13.9 3.1 1 23 578 601 578 601 0.97

10 16 0.29 29 6.4 5.3 1 23 1026 1049 1026 1049 0.96

11 16 0.00048 0.047 15.2 0.4 2 23 1277 1298 1276 1298 0.97

12 16 0.18 17 7.1 6.3 1 23 1304 1327 1304 1327 0.97

13 16 0.059 5.7 8.6 5.0 1 21 1356 1377 1356 1380 0.95

14 16 0.15 15 7.3 1.7 1 23 1447 1470 1447 1470 0.94

15 16 0.024 2.3 9.9 0.4 3 23 1516 1536 1514 1536 0.93

16 16 0.0043 0.42 12.2 5.6 1 23 1542 1564 1542 1564 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.2e-05	0.0012	20.2	1.7	1	23	90	112	90	112	0.98
2	16	0.0018	0.18	13.4	0.7	1	23	125	147	125	147	0.97
3	16	4.1e-05	0.004	18.5	4.4	1	23	153	175	153	175	0.99
4	16	9.6	9.4e+02	1.6	0.1	1	21	256	277	256	280	0.73
5	16	0.055	5.4	8.7	2.1	2	23	286	308	285	308	0.94
6	16	1	1e+02	4.7	2.5	1	20	356	375	356	377	0.88
7	16	0.1	10	7.8	0.1	1	23	519	541	519	541	0.96
8	16	1.2e-05	0.0011	20.3	0.8	1	23	550	572	550	572	0.99
9	16	0.0012	0.11	13.9	3.1	1	23	578	601	578	601	0.97
10	16	0.29	29	6.4	5.3	1	23	1026	1049	1026	1049	0.96
11	16	0.00048	0.047	15.2	0.4	2	23	1277	1298	1276	1298	0.97
12	16	0.18	17	7.1	6.3	1	23	1304	1327	1304	1327	0.97
13	16	0.059	5.7	8.6	5.0	1	21	1356	1377	1356	1380	0.95
14	16	0.15	15	7.3	1.7	1	23	1447	1470	1447	1470	0.94
15	16	0.024	2.3	9.9	0.4	3	23	1516	1536	1514	1536	0.93
16	16	0.0043	0.42	12.2	5.6	1	23	1542	1564	1542	1564	0.98

Sequence Information

Coding Sequence: ATGCAAGGCATCGTCTATATGCCAGAAAATCTTCAAACAGCTTCGTCACCTTCCAGTAAGGCTGCAgATTCGAAACATATAATGGACATATCGTTACATCCAAATTTGCTGAATAAGGAGCTCCTGTTAAACAAAACTAATCAAAGTGATTCCGGTATCCATTCTGCCACCGGAAATTCCTCCTCGTTAAGCGACGAAATCATGGACAATCAGTCTCAAAATTCGGACGCAGAAAATCGCAGCGAAAGCAGCTCGCCCGAAAGAAAGTACTTCTGCCCTATCTGCGAAACGGTTTTTACTTCCCAACATGAATTTACCCTCCACATTCGATCTCACAATAACGAACCGGAACCGCAAGACTGCGAAAAGAACTACACTTGTCGCATTTGCTTCAAAGTGTTGAGTTCCAGTAGCAGTTTGGATCGGCACAGTTTGATCCACAGCGGGGAAAGGCcgtttacgtgtaaattttgCGGAGACACCTTTACCACAAACGGTAACATGCATCGTCACATGAGAACCCATTCCCAACGAAACGACAGCTACGAATCGGACGCCAGTATAAGTAGTAATGATTCCAAAGGAATTgaatataacaataataaaattagcagCAAAACTGATAGTTTAAAAGACCCAACTGAAGATAACAATAACGAAAACAAACGTATATACAGTGAAGATAAATACACTACTAACAGCAACCCTAAACGAATAGCCAAGGAAGAACCTCAAGATCTCAGTAATCGTaatcaacaacaaaattatcagTGTTCTGTGTGCGAAAGGAACGACTTCACGTCGATAAATGCACTCGAAATGCATTTAGAAGACAACCATAAAAATTGCCTAACGACATGTAAACTGTGTAATCAAAActtcaaaaacaataaacttttaaactttcacTATAAAATAGCACACCAATTAGAAGAGACTGAAAAAGTACCGTCCGTTGTTGGATTTAAAGATCTCACATTTGTCGATTTCTCTAGCGAAAAATTTCCTTACATAGCCAAGTACGAGTGTGAGAAGAATCTTCATAAGGCATCGAGCGGTCCcaaatttatttgcaaaaattgcGGTCGAGCTTTTCCTTGCTGCAACTCCCTCGAAATCCATAAAAAAGACTGCTTTGCCGGATTAGATCTATCCACAAACGGAAACAAGCCTCCCACTCAAATTCCATCAGAAGAAAAAGACGTAAAGAGGGTTGAATTCTTTGCACGTTTAGATTTACACTCTAACTCTCccaataataaactaaaaaatgaTATTCCATCCGAAACGATCGACGTGAAAGAGAAGCTGCAAAAGCACCTCTTGCAGTCTATCGAAGGAACTAAAGATCTTGCCGATATACAGTCAATAATCTCCATGACGACGTGCGGAAGTCTTCTACAGCATTTACAAACAAAGACGAACGAAATTCCTCTTTTACCATTAGCAACCCCTTTGGAGAGGAGATCTCACGAAATTCAAAAGCAAGAAAACGAAGAAGAATCGCAAGATGCTTTTGCTGCAGAATTTCGAAAGATGAAATTAAGAGGAGAATTTCCCTGTCGACTTTGTACTGCAGTATTTCCAAATCTACGTGCTCTCAAAGGTCATAATAGAGCTCATTTAAATAGCAATAACAATGGCACATATCGGTGCAACATGTGCCCACATTCGTCAATCGATAAGGCGGCCCTTATTCGTCACATGAGAACCCATAACGGAGACAGACCTTACGAATGCTCTCTTTGCAATTACGCTTTCACAACCAAAGCAAATTGCGAAAGGCATCTGAGAAATAGACATGCCAAGAGTACCAGAGAAGAAGTGAAAAAATCCATAATTTACCATCCCTCTGAAGATCCTAGTAACGACgaaattactaaaatgttAAGTCGAGAAGAAGCCAAAAAAGGTAATTCCAATAATGACATAGGAATTGCTGTTAACGATACCAAAAGCAACAGTAGCCCTAATAAGAGTTTTAACTCTCGTGATagacataattttatttctgaaaatttttcctttaataatcGGATATCACCATCTGGTCATAGTTTACCTGTAACAGCGAATTTTCTGTCGTTGAAAAATAGCCTTCGATTAAAACAGCTTAACGATGAGGGCGCTATTCCCACAAACGACCAAGTCATACAACAAAGTCCTGctgacataaaaaataaaaaagaatttttgtcgTCATATCTTACGCATTCATTAACGTTTTCgcctaaaattgaaaacatttcTACACCACAATCGACCCCAAAATTgcaagtaaaaaaattggaaactcTTAAGGATACATCTCCGGAGGACAATTCGTCGAATAATGTCGAGCCTAATAGGAATTATAATCTCGAGGAGGACGAATCGATGAATTACGTTTTGGACCTAAgtaagaagaaaaatttaaaagaagacGAAAATTTCAACAGCACAGACGAATTACCGCAAGATTTGACAAAGAAATCTGAACCAGCAGACAAACATAACGTTAGCGATATTTTAACACAacaattgcttaaaaatactCCTAAAATGGATCCCCTCTATGCATCGCAGCTCGCATTCTACCGGAACAGTTTTCACGGTTTATCGAGTTTTCCATACTGGCCGTTAACTTGTAATCCCCTATTGTTTTCATCGGTACAAGCTCCGATCTTTCCTCAAAATCCTCAAGACATTAAAGATCGACTTCAGAGACTTCAATTCTGTAGTGGCGGCATGATTATGGACAATTTTAAAGAAAGGCTAAAACACATGCAACACGTACCAATACCGAATCTTAACTCTCACAATAGTCCATCAAATAAAAACGAACAAACCCCCGATATTAGTAAATCAGCAGAGTCCAGTATTCTAAATTCAAATTCTTCCGAAAACATGGACAAGTCTTCGTTGAGTATTGGTTTGGAGCCTAATTATCCGGAAAGTATTTCCAACGTTCAAAGTCCACTTTCTTCCCATTCTAAATCTGAAATTGTTCATTCATCAAACTCAGTAAAAATGGTGATAAAAAACGGAATTCTGATGCCAAAACAGAAACAGAGGCGGTATCGTACTGAGAGGCCGTTTTCCTGTGAACACTGTTGTGCCAGATTTACTCTTAGATCGAATATGGAGAGACATATAAAGCAACAGCATCCTCAGTTTTGGTCTCAACGGCAACGATCTAATTTAAACACATTAGGAAGAAAAGGCCAAGCACACAACTCAAAAGACAGTCTCTGTAACATCAACATTCCCACATATCATTTACCAAAATCGTCTGAGCTCCCTGAAAGCAAAAGTCATAAAATTTCGGACAAAATAAAGTATGCCATACTGGCTCAACACCTAAAGTCAACACAAGAAGCAAACCCATACTTGTTAGAAACTCAGGCGAAAGAGGACGATGACGACTGCGAATTGATAATTGATGAAAATGATGACAATggctttaaaaacaataatgaacataaaaatgttGGGAAAGAACAAGTATTAGATGATCGCCCTTCGCTAGTGGAAGATGAAAAATACGGTCTTATACAAGAAAATTCAAAGCCAGCATTCAAGAACGAAGATAGTCATGATTTGGTACCTGTTTCTCGTCTTCTTGATAACGCATCTCAACAGCCATttaaagattattttaatagagaGAACGAAGAACATGACGACGGAAACAGCGAAGAAGAGGAGGAAGGTTTAGTTGCTAGCAGTAGTACCAGTGAGGAAAATAATTCGGGAACAGATGAAAACAGGTCCGAATCTGAAAACAACGCTAATAGCCGCCAACCGCCAAAAAAAAAGTCCGCTTACTCTTTAGCTCCAAACAGAGTAAGTTGTCCATATTGTCAACGAAAGTTTCCGTGGACTTCCTCCTTAAGACGTCATATCCTCACTCATACTGGACAAAAACCTTTCAAATGTAGCCATTGTCCTCTTTTGTTTACCACAAAATCAAACTGTGACAGGCATTTACTTCGGAAACACGGTAATTCCGCTACAACTATCACTAATGCAGCAGACAACTCCCAGACGCCTAATTATTTAATGCGAAATGTTCCTGAACGTCCTTTTAAATGTTCTTATTGTCCTAGTAGCACGTTCTCTACATATTCAAATCTTAAAAAACATATCAATTGCAAACATTCAACACCTAGTTCTCAAAGTGACGATGCCCATTCCCAGATTTCGACTGGATATGAAGCGGGTAGTTCCGAAGATGAAAAGCAACTGAGCAACGGAAATCAGACTGATTGGGACAAGCAAGTTTCCCAAAACAGAATTAATGTTTCCAATGGAAACGTGGAAATACAAAATTCTCATGTTCAAAACTCAGAATTACCATTCAAGTGTCACTTGTGTGATAACTCCTTTGCCGAACGTCAAGACACTCTTGATCATATTAAAGACAAACATGTTTCGGAATATGAGTTGCTGATGTCAAAAAATGCTTTGGAAAGTCACCTGACAATGGAAGATAGCGCTCATCAATATGAGGACGAGAATGAAGTTCGAGGAAAATTTCCCGATTATACTAATCGAAAAGTAATCTGTGCGTTTTGTATGCGCCGATTTTGGTCTGCAGAAGATTTACGACGACACATGAGGACTCACACTGGCGAAAGACCTTTTAGCTGTGACATTTGCCAAAGACGATTTACACTAAAACATAGCATGTTAAGACACCGAAAAAAACACAACGTCGCATTCGAGAACGATACTCTGAACAGTGACGAAGATATAAATAACTCTGGTCCTAATTTattacatgaaaaaataacgaaactAAACAGACTCAAATCTACAGAAAAAACTGACGATTCCGATGGAGCTGAAGGTAGCGACCTTATCAGTAATTTGTTGGGAATAAGAGATCGATCGATTATTGATCAAGTACTAACTGCATCAGCTGATGATGCTGctaaacttttgggtgttaaAAGTGGTGCTCCGGAATGA
Protein Sequence: MQGIVYMPENLQTASSPSSKAADSKHIMDISLHPNLLNKELLLNKTNQSDSGIHSATGNSSSLSDEIMDNQSQNSDAENRSESSSPERKYFCPICETVFTSQHEFTLHIRSHNNEPEPQDCEKNYTCRICFKVLSSSSSLDRHSLIHSGERPFTCKFCGDTFTTNGNMHRHMRTHSQRNDSYESDASISSNDSKGIEYNNNKISSKTDSLKDPTEDNNNENKRIYSEDKYTTNSNPKRIAKEEPQDLSNRNQQQNYQCSVCERNDFTSINALEMHLEDNHKNCLTTCKLCNQNFKNNKLLNFHYKIAHQLEETEKVPSVVGFKDLTFVDFSSEKFPYIAKYECEKNLHKASSGPKFICKNCGRAFPCCNSLEIHKKDCFAGLDLSTNGNKPPTQIPSEEKDVKRVEFFARLDLHSNSPNNKLKNDIPSETIDVKEKLQKHLLQSIEGTKDLADIQSIISMTTCGSLLQHLQTKTNEIPLLPLATPLERRSHEIQKQENEEESQDAFAAEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNSNNNGTYRCNMCPHSSIDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHAKSTREEVKKSIIYHPSEDPSNDEITKMLSREEAKKGNSNNDIGIAVNDTKSNSSPNKSFNSRDRHNFISENFSFNNRISPSGHSLPVTANFLSLKNSLRLKQLNDEGAIPTNDQVIQQSPADIKNKKEFLSSYLTHSLTFSPKIENISTPQSTPKLQVKKLETLKDTSPEDNSSNNVEPNRNYNLEEDESMNYVLDLSKKKNLKEDENFNSTDELPQDLTKKSEPADKHNVSDILTQQLLKNTPKMDPLYASQLAFYRNSFHGLSSFPYWPLTCNPLLFSSVQAPIFPQNPQDIKDRLQRLQFCSGGMIMDNFKERLKHMQHVPIPNLNSHNSPSNKNEQTPDISKSAESSILNSNSSENMDKSSLSIGLEPNYPESISNVQSPLSSHSKSEIVHSSNSVKMVIKNGILMPKQKQRRYRTERPFSCEHCCARFTLRSNMERHIKQQHPQFWSQRQRSNLNTLGRKGQAHNSKDSLCNINIPTYHLPKSSELPESKSHKISDKIKYAILAQHLKSTQEANPYLLETQAKEDDDDCELIIDENDDNGFKNNNEHKNVGKEQVLDDRPSLVEDEKYGLIQENSKPAFKNEDSHDLVPVSRLLDNASQQPFKDYFNRENEEHDDGNSEEEEEGLVASSSTSEENNSGTDENRSESENNANSRQPPKKKSAYSLAPNRVSCPYCQRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNSATTITNAADNSQTPNYLMRNVPERPFKCSYCPSSTFSTYSNLKKHINCKHSTPSSQSDDAHSQISTGYEAGSSEDEKQLSNGNQTDWDKQVSQNRINVSNGNVEIQNSHVQNSELPFKCHLCDNSFAERQDTLDHIKDKHVSEYELLMSKNALESHLTMEDSAHQYEDENEVRGKFPDYTNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICQRRFTLKHSMLRHRKKHNVAFENDTLNSDEDINNSGPNLLHEKITKLNRLKSTEKTDDSDGAEGSDLISNLLGIRDRSIIDQVLTASADDAAKLLGVKSGAPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00030474;
90% Identity: iTF_00030474;
80% Identity: -