Amal029109.1
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- -
- Assembly
- GCA_029378335.1
- Location
- CM055663.1:1734053-1736526[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00045 0.044 15.3 0.8 2 23 10 32 9 32 0.95 2 13 0.026 2.6 9.7 5.9 1 21 44 64 44 67 0.95 3 13 0.00086 0.084 14.4 0.0 3 23 96 119 94 119 0.91 4 13 0.00036 0.035 15.6 1.2 2 19 273 290 272 292 0.95 5 13 7.5e-05 0.0073 17.7 4.8 1 23 300 322 300 322 0.98 6 13 4.1e-07 4e-05 24.8 3.6 1 23 332 355 332 355 0.98 7 13 0.00017 0.016 16.6 4.8 1 21 361 381 361 384 0.95 8 13 0.00074 0.073 14.6 4.0 2 23 393 414 393 415 0.95 9 13 1.8e-05 0.0018 19.7 1.9 1 23 462 485 462 485 0.97 10 13 0.0065 0.63 11.6 5.0 2 23 494 515 494 515 0.98 11 13 0.015 1.4 10.5 2.2 1 23 554 576 554 576 0.98 12 13 1.5 1.4e+02 4.2 3.0 1 15 579 593 579 600 0.84 13 13 0.0084 0.82 11.3 3.5 1 23 656 678 656 678 0.99
Sequence Information
- Coding Sequence
- ATGGACCGGCCAAAGCCACAGAAAAACAAGTGTTCGCTTTGCGACAAAAAGTTTCCCCAAAGAAAACTCCTCTACGTCCACTTAAGCAACGTCCACAGAGTGCAGCCGTTCGAGCCCTTAAAGCCGACATTTGAATGCAGAATATGTCGCAGAAAGTTCATGAATCAATCGTTCCTAACGAGGCATACAAAATGTTTCCATACCTCTGACGGCCCTAATAGTATTAACATTAACAGTAGTAGTGCAGTTCATCTTAAACCATCGACCAAAGGTATCAGACTGATTTGTCCACTGGACGGTTGCGGCGAAAAGTTCGTGAACAACGTAAATTTGCGATTGCATTTAACTGAAGAACACGGCGTTAACATTGAATTTGAGGATTTGACTTTTAATTCAGTTGCAGattttgaaaaatggaGATGTCGAGTTCAAGAAGAGACACGGTCTTTCTACTCGCTGGACACGGGAGTGAGGCCGTTGTTGAATGGTACAAGCAAAAAAGCGTACAATTGCCACAGGTCGTACACGTACAAAAGCAAAGGTAAAAATATCAGACCTTTGAGTTCGGTGTCGAATAAAATCAGCAGGGCTTGTCCAGCGAGGATAGaagtaacttttttaaacgACGAACGGTCCACAATATCAGTAAAGTTTTGGAAAACCCATTGCGGTCACACGGAAACAATCGGACGAGTAACTTTCAACGAACTCAACGATGGTAGAATTCAGTGTGAACTCTgcaaaatgatattttttataagacaCCATTTCGACACCCACCTTTGTAGCGGAAAAGTAAAATTGGCGAACAAACTGCCATGTCCCGACTGTCACAAAACGTTCCCGACAAATTTCCGTCTGAAACGACACTCGTACTGtcattcaaaagaaaaatcgtTCGAGTGTCGCCATTGTAAAAAACGATTTAGTCACGAAAAGGCCCTCGCCAGGCATCAGCTAATACACACAAGAGATACAGACGTTGAAGGCCGGTTTAAGTGCAAAACGTGTCGCAAAACATTCACGCAATCCGACTCTCTCGAGAAACATATGAAGAAGATCCATTCATCCGAGAGACCTTTCAGGTGCGACTACTGTGGTAAAATGTTCACACGAAAACATTCCGTATTTGTACATATTAAGTGTGTTCATAAGCATGACCCGAGGATTTCGGAAAAATGTCAAGTGTGCAACAAACAGTTCGAACACAGATTTGAACTTATTGAGCATATGAATGAACACCATAATAATACCAAAATGGAATGTGATGATCAAATAGAAGTAACGGAAACCAAAATTACCAACAATGAGAATTATAAACAACAAGaagtagaaatatttaaacctCTTGCGAACTTTGAAGAGAATTCAAGCAAGAAACCTTTCAAATGTAACCATTGCCTCAAGGCGTTTACCCGTAAAGAAACCCTCGCAATCCACGTCAAATCCATCCACTTAAGAGACACAGCAGGTCTTGAAAAATGTCACGTATGCGACAAACATTTCTTGTACAAGTCTCGATTAGCGCAACACATGAAGATCCACACAAAATTTGACTGTTTATTCTGCGTACGATCAGCCGATGAGTGCACTTGTTCGGAAAGTCCCGAAAAATACGGGGATTCCTTGAAGAAGCCTTTCGCTAGAGACAATTTCATGTTCAAGTGCCAGACGTGTTCCCGAATTATTTTGCGCCAATCCCAACTGAAGATGCACCTTCGGAAACACCGTGATTACAAGTGTGTCGTATGCGACAAGGATTACAAGAATTGCAGTTGTTCGGACAATCACATAGAGGTTTCCAAGACTAATATTATTACTTATCAAAAAAGTAGTATTGGTAACAGCAGTAAAACTTCGACACAAGTTGATGAACAGAAGTCGGCAACAAATTCAAGTGTTGAAGAAGACTTCGGCGAAGACCCAATGAAAAGCGTCGTTACCAGAGCCAGAGACGAGTTTATGTTTAAATGCCAGACGTGTTCCAAGATCGTCTTGCACCAGTTCCAGTTGAGGAATCACATGCGGATACATCGCGATTATACGTGTATAGTTTGTAATCAGGATTACAGGAATTGCAGTTGCTCTGACGATTATATGGAAGTTTCGAAAAGCGCGATCACTTACAATAAGAAGCAGACTAACAACAATACAAAATCTAATGCAGAAAAAGAATTAGAATTAGCAGTTGAATGTGATGTTGAAGTTAAGAAGGAAATTGTTTCTCCTTCTGGTGTGAAAGACGAGAAGAAATCAATCGACTTGATGAGCGAAGTTATTATTCCTAAAGAAGAAGTTAAGGAAGAAATTGGCGAAATCGATGAAAGTACCACCGTTAACATTTATAAGAACGAGACCTCTGGTGTTAAGGAAGAATCCATAGAGCTGTTGTAA
- Protein Sequence
- MDRPKPQKNKCSLCDKKFPQRKLLYVHLSNVHRVQPFEPLKPTFECRICRRKFMNQSFLTRHTKCFHTSDGPNSININSSSAVHLKPSTKGIRLICPLDGCGEKFVNNVNLRLHLTEEHGVNIEFEDLTFNSVADFEKWRCRVQEETRSFYSLDTGVRPLLNGTSKKAYNCHRSYTYKSKGKNIRPLSSVSNKISRACPARIEVTFLNDERSTISVKFWKTHCGHTETIGRVTFNELNDGRIQCELCKMIFFIRHHFDTHLCSGKVKLANKLPCPDCHKTFPTNFRLKRHSYCHSKEKSFECRHCKKRFSHEKALARHQLIHTRDTDVEGRFKCKTCRKTFTQSDSLEKHMKKIHSSERPFRCDYCGKMFTRKHSVFVHIKCVHKHDPRISEKCQVCNKQFEHRFELIEHMNEHHNNTKMECDDQIEVTETKITNNENYKQQEVEIFKPLANFEENSSKKPFKCNHCLKAFTRKETLAIHVKSIHLRDTAGLEKCHVCDKHFLYKSRLAQHMKIHTKFDCLFCVRSADECTCSESPEKYGDSLKKPFARDNFMFKCQTCSRIILRQSQLKMHLRKHRDYKCVVCDKDYKNCSCSDNHIEVSKTNIITYQKSSIGNSSKTSTQVDEQKSATNSSVEEDFGEDPMKSVVTRARDEFMFKCQTCSKIVLHQFQLRNHMRIHRDYTCIVCNQDYRNCSCSDDYMEVSKSAITYNKKQTNNNTKSNAEKELELAVECDVEVKKEIVSPSGVKDEKKSIDLMSEVIIPKEEVKEEIGEIDESTTVNIYKNETSGVKEESIELL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -