Basic Information

Insect: Agrilus mali
Gene Symbol: znf143
Assembly: GCA_029378335.1
Location: CM055657.1:28027999-28029627[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.7e-05 0.0017 19.7 1.1 2 23 162 185 161 185 0.94

2 7 9.8e-06 0.00096 20.5 4.2 1 23 191 213 191 213 0.99

3 7 5.6e-07 5.5e-05 24.4 0.6 1 23 219 241 219 241 0.98

4 7 0.00033 0.033 15.7 0.2 1 23 247 271 247 271 0.96

5 7 0.00058 0.057 14.9 2.5 1 23 277 299 277 299 0.98

6 7 0.00016 0.015 16.7 0.5 1 23 305 329 305 329 0.95

7 7 2.2e-05 0.0022 19.4 0.8 1 23 335 358 335 358 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.7e-05	0.0017	19.7	1.1	2	23	162	185	161	185	0.94
2	7	9.8e-06	0.00096	20.5	4.2	1	23	191	213	191	213	0.99
3	7	5.6e-07	5.5e-05	24.4	0.6	1	23	219	241	219	241	0.98
4	7	0.00033	0.033	15.7	0.2	1	23	247	271	247	271	0.96
5	7	0.00058	0.057	14.9	2.5	1	23	277	299	277	299	0.98
6	7	0.00016	0.015	16.7	0.5	1	23	305	329	305	329	0.95
7	7	2.2e-05	0.0022	19.4	0.8	1	23	335	358	335	358	0.91

Sequence Information

Coding Sequence: ATGTACATCACTGTAAATGAAGACAACGATGAAGAAGAAGACGTTAATACTGCAGAGTGTGATTCAAATGCACTTTTAAGTGTTAATGACCCACTAGGTGTAATTTACCCAACTGTTTCGAACATGTTTGTTACTACAGAAGATGGACAGATGTATCTAACTCAAAACGTTCTAACAGaCGGTAGCTTAATTCCTTGTCAGTCTGATGAAGTTGTTGATTGTGAGACTCAGGAAAATGAGGAAGAGCAGTTGGATTTAGACACAAATTTTACTACTGAATTTCAAGAAGAAGATGATAATAGTGCTGATATTTGTCAggGAAACAGTTATCAGGAAATTCAGCTAGAAGATGGGACCTGTGCAATTATTGATTCTGAGTTATTAAAATCCATAATTGAAAAGTCTAACAACTTTACAATAAACAGAAATACACATGATAACATAATTGAAGAACCAAAAACTAAGAAATGGTCAAAGAAATGGGTCTGTGAATATGTGGGTTGTGGAAAAGTATACAGTACTTCACATCACCTTTCagttcATAAGCGTGTACACACTGGTAATAGACCCTTTAAATGTACCCACTGTGTAAAAACATTTACCACAGGATATTCCCTTAAGTCTCATTTACGTATACACACAGGAGAGAAGCCATACCCCTGTAAAGTTTGCCCAAAACAATTCAAAACTTCTGGAGATCTGCAGAAACATAATAGAATTCATAcagGTGAAAAGCCGTTTATGTGCCCCATCGAGGGTTGTGGGAAGTCATTTACGACATCTAATATTCGCAAGGTTCACATAAGGTCCCACACAGGGGAGCGACCTTACGTTTGTTCTACATGCAAGAAGGGATTTTCTTCTGCAACCAATCATAAAAATCACGTCCGAATACATTCCGGAGAGAAGCCCTACGTTTGCAATGTTATaggCTGTGGTAAAAGATTTACTGAGTATTCATCCCTGTATAAGCACAATTACGTTCATCAGCAAGCGCGGCCTTTTAATTGTTCATATTGTCCCATGTCTTTTAAACAGGAGTCTTCTTTAAAGACGCATAAAATCGGAGAACACGATGTAGTTTTCGGAGACGATGGTAGTGAAATGATCTATTCTAAGTTCGGGCTCGctttaaaatttgaacctAAAGCTGAAGATAtcgaaaatgaagaagaagaggaagagattgaagtgttttaa
Protein Sequence: MYITVNEDNDEEEDVNTAECDSNALLSVNDPLGVIYPTVSNMFVTTEDGQMYLTQNVLTDGSLIPCQSDEVVDCETQENEEEQLDLDTNFTTEFQEEDDNSADICQGNSYQEIQLEDGTCAIIDSELLKSIIEKSNNFTINRNTHDNIIEEPKTKKWSKKWVCEYVGCGKVYSTSHHLSVHKRVHTGNRPFKCTHCVKTFTTGYSLKSHLRIHTGEKPYPCKVCPKQFKTSGDLQKHNRIHTGEKPFMCPIEGCGKSFTTSNIRKVHIRSHTGERPYVCSTCKKGFSSATNHKNHVRIHSGEKPYVCNVIGCGKRFTEYSSLYKHNYVHQQARPFNCSYCPMSFKQESSLKTHKIGEHDVVFGDDGSEMIYSKFGLALKFEPKAEDIENEEEEEEIEVF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00030480;
90% Identity: iTF_00030480;
80% Identity: -