Basic Information

Insect: Agrilus mali
Gene Symbol: -
Assembly: GCA_029378335.1
Location: CM055660.1:10586400-10591075[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00094 0.092 14.3 3.2 1 19 147 165 147 167 0.95

2 8 0.00013 0.013 16.9 3.1 1 23 175 197 175 197 0.97

3 8 1.1e-07 1.1e-05 26.6 3.0 1 23 203 225 203 225 0.99

4 8 2.8e-05 0.0027 19.1 1.3 1 23 231 253 231 253 0.94

5 8 7.3e-07 7.1e-05 24.0 3.7 1 23 259 281 259 281 0.98

6 8 4e-06 0.00039 21.7 3.3 1 23 287 309 287 309 0.97

7 8 1.7e-06 0.00017 22.9 1.8 1 23 315 337 315 337 0.98

8 8 5.4e-06 0.00053 21.3 3.1 1 23 343 366 343 366 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00094	0.092	14.3	3.2	1	19	147	165	147	167	0.95
2	8	0.00013	0.013	16.9	3.1	1	23	175	197	175	197	0.97
3	8	1.1e-07	1.1e-05	26.6	3.0	1	23	203	225	203	225	0.99
4	8	2.8e-05	0.0027	19.1	1.3	1	23	231	253	231	253	0.94
5	8	7.3e-07	7.1e-05	24.0	3.7	1	23	259	281	259	281	0.98
6	8	4e-06	0.00039	21.7	3.3	1	23	287	309	287	309	0.97
7	8	1.7e-06	0.00017	22.9	1.8	1	23	315	337	315	337	0.98
8	8	5.4e-06	0.00053	21.3	3.1	1	23	343	366	343	366	0.96

Sequence Information

Coding Sequence: ATGGGCGATATAGAATGTCCacaatgtaaaacaattttgaaggATTCGGCTAGAAGATTAGTCCAAGATAGTTGTGGCCATAAAAAATGTAGACTGTGCCTATTAGCAGATGAAATAGGATGCCCCCAGTGCTCCAAAGACAAATGCATCAATAACAATAGCGATACATTGATAAATGCTACCCAATTCGTAGAAGACTTAAAAGTCGAAAAACATCAAACTACAGTTATAACTTGTAATAAGTTTTGTGTGAAGAACAAAACATCAGTTGTGAATAACTCATCAACGACAGACAAAAAAGAAGTTGAAGATAATGCTCAATCACAAAATGAAATATGTAATAAGGATGCTTTAATAGAAACTCAATCCAACAAGCGGAAATATGATCTCTTTACATTACCCAGCCACATtacagtaattaaaaataatggggACCAATATAAATGTAATGTTTGTCAAAAAACGTTCTACACAAAGTATTATGTAAACAACCATAAGTACTGTGCAGAAGgaACCAAACCATTTTGTTGTGATAGATGCAAGAAATCATTCATAACTAAATCACAACTAGACACTCATGTACTGATCCATTCAAATGTAACACCTTATACTTGTAACATTTGTGGTAAatcttttaaagaaaagaGTAAACTGAAGAGACATAAACTAACTCATACGAAATCAACTTCATTTATGTGCCAAACATGTGGGAAAGGTTTTAAGAGTAAAGATTATCTTAAAATACATTCATATATTCATGAAGAGAATAAGCCATTTAAGTGTAAAACATGTAATATAAAGTTTTCTAATTCGTCCAACTTAAAGAAACATCTCTTAAAGCATTCAAaagaaaaaaatcatatgtGTGATCAGTGTGGAAAACGATTCAAGTCAAGGTGGTCGTTGACGGTTCATAGAAGATCTCATGCTAGATTGAGGATTCATAAATGTTCGGAATGTTCTAAAGCATTTATTAATGCTAAAGAATTGCGAAGACACTTATTGACTCATATAGACTTGAAGCCTTATTGTTGCGGATTGTGTGAAACGTCATTTAGAAGGAAGGATAATTTAGAAAGACACATAAAAAATACCCATCCGGGGAAGAAAGTTGTTGCTATTACAAAAGGCAACATTGAGGAACTTATCAAAAACAAACTAAACGCGCCAAAGGTCATAGTTGATAACGaatcaattaaagaaaaaccaAATGCTATTAAAGTTATCACCACTTCTAATTTTAATCGATCACCATCAGTGATAAGTTCTACGGTTAATTGCCCACTGAAATTAGCATTCAAAACCAAAGCATTCAAGTCCCATTACAACATTCATGGacGAGAGTATGTGGAATCAACACCTCGCTCTTACGATGTGGCTGAATCAGTTAATATTTGCAAAAGAATTCTCTCGCCCTATAGTCCGGCTTCTTCGGCATCTGCAGTAACTTCACCAGCAACAAATTGTCAATCGACTGaagtttacgaaaaaatattaaatcctACTCCTATTGAACCTAACCAATTGCGATCTTATGGAATTATTAAGTTTAAGTTACCATCTAACTATAAGAACATTTTAAAGCATGATCCCATACCTAAGTCTAACGTAGAACCTATACAGCCATCTCATAATGTTCCTAAGTTTTCCTCTTTGACTTCCCCTGAACTTACGGCTGATCCTCAAAATAATAGtagtattattaataatagggGTTTTGTTTCTAACGAGTTACCATATGCAACAAGTGTCATTGTCAATTCACCTTATACACAGCGGATTTAG
Protein Sequence: MGDIECPQCKTILKDSARRLVQDSCGHKKCRLCLLADEIGCPQCSKDKCINNNSDTLINATQFVEDLKVEKHQTTVITCNKFCVKNKTSVVNNSSTTDKKEVEDNAQSQNEICNKDALIETQSNKRKYDLFTLPSHITVIKNNGDQYKCNVCQKTFYTKYYVNNHKYCAEGTKPFCCDRCKKSFITKSQLDTHVLIHSNVTPYTCNICGKSFKEKSKLKRHKLTHTKSTSFMCQTCGKGFKSKDYLKIHSYIHEENKPFKCKTCNIKFSNSSNLKKHLLKHSKEKNHMCDQCGKRFKSRWSLTVHRRSHARLRIHKCSECSKAFINAKELRRHLLTHIDLKPYCCGLCETSFRRKDNLERHIKNTHPGKKVVAITKGNIEELIKNKLNAPKVIVDNESIKEKPNAIKVITTSNFNRSPSVISSTVNCPLKLAFKTKAFKSHYNIHGREYVESTPRSYDVAESVNICKRILSPYSPASSASAVTSPATNCQSTEVYEKILNPTPIEPNQLRSYGIIKFKLPSNYKNILKHDPIPKSNVEPIQPSHNVPKFSSLTSPELTADPQNNSSIINNRGFVSNELPYATSVIVNSPYTQRI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00030462;
90% Identity: -
80% Identity: -