Amal019815.1
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- VEZF1
- Assembly
- GCA_029378335.1
- Location
- CM055659.1:24590665-24594338[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.1 9.9 7.9 0.6 1 23 62 84 62 84 0.93 2 20 2 1.9e+02 3.8 6.8 1 23 88 110 88 110 0.89 3 20 0.03 2.9 9.5 2.1 1 23 116 139 116 139 0.96 4 20 0.0027 0.27 12.8 6.8 1 23 145 167 145 167 0.98 5 20 0.12 12 7.6 2.1 2 23 185 207 184 207 0.95 6 20 8e-07 7.8e-05 23.9 0.4 2 23 213 234 212 234 0.97 7 20 5.1 5e+02 2.5 0.3 3 11 242 250 240 262 0.81 8 20 0.17 16 7.2 1.4 1 23 268 291 268 291 0.92 9 20 0.00098 0.096 14.2 0.0 3 21 298 316 297 317 0.93 10 20 0.27 26 6.5 1.6 2 13 392 403 392 405 0.87 11 20 0.0016 0.16 13.5 0.1 3 23 471 491 470 491 0.96 12 20 4.1 4e+02 2.8 2.3 3 23 497 517 495 517 0.88 13 20 5.4 5.3e+02 2.4 0.3 1 20 523 542 523 546 0.70 14 20 0.01 0.99 11.0 4.1 1 23 552 575 552 575 0.94 15 20 0.00073 0.072 14.6 0.5 1 23 581 604 581 604 0.94 16 20 0.0092 0.9 11.1 0.6 2 23 613 635 612 635 0.97 17 20 1.4e-07 1.3e-05 26.3 0.2 1 23 640 662 640 662 0.98 18 20 0.003 0.29 12.7 2.0 1 23 668 690 668 690 0.98 19 20 0.00065 0.064 14.8 4.0 1 23 696 718 696 718 0.98 20 20 5.7e-05 0.0055 18.1 0.1 1 21 724 744 724 745 0.96
Sequence Information
- Coding Sequence
- ATGTTATCtaaagaAAATTCTGAAAGTATACTGAACACGTCCTCAACAATTTTCATTGAGGAGATATCTTCAGACGAGGAGATTGTTGACGAAATAGACATAAAAGACGTTCAATTGGTCCCATGGAACGTGCAACCGAGCATAGAATTTGTAAATTGCAACAAGGAAAAGCAGAAAGTCGAATATCCTTGCGAAATTTGTCTGGAAATGTTCAATAACGCAAACGCTTTACGCTGCCACTACGCTTACCACGAACCCCGATACACTtgcaaaaaatgcaaaaagaaatttaaaataataatcgacTACATTTGCCACATGCATACGCATGGTCGAGACAAGATGTACAAATGCCCCAAGTGTCCATTCAAACATACTGAATTATCCGAGTTGAAAATACACATGTACTCGACCCACAACgagtacaaaaaatacaaatgccAAAAATGCACCAAACGTTTCTCATTTTACACAGAATACAACGAACATATGCAACACCATCAAAAAATGAGTGAAAGTGCAAAATTAGTTCTTCAAAGTAAAGTACCTACACAGTGCGGTCattgtttaaagaaatttccAACAATTCGTCTTATGCGCGAACATGCTCGCAATAAACATCTTTTGGAAACAATAGAATGCAAAGTGTGCGGAAAAGAGTTCACCACCAAAGAACGTTTGTTAAACCACATGCGTGTACATTTGAAGGGCACCGaactaaattgtttattttgtgaTAAAACATTCGAGGCAGAACATATAAAGAGGATCCACGAACGAGCCCACATTGACAATAAAAAGTTCGAATGTTCGATGTGCAAAaaggtttttcttttttacagaCCTTACCAAGAACATATACGTTTGTATCATAAAGCACCCGAGAATGCTTGTGCCAATTGCGGAAAAAGTTTTCCTCAAGCTCAACAACTCGAAGATCACAAAAATGTTTGTCGCAGCAAGTTGAAATCAACGACATGCGAATATTGCAAAGCCGAGTGCTCATCTCTTCGGAAATCTGAAGAGTACGAAGAAAGTAGAGTGGCCTTCTCAGATGATGTAAGCCCAAAGACCAAAACGCCTGTAAGAGACtcaacaaaacacaaaaaccgttgtaagaaaaatttcaaaaagaaagtGGAAGAACTGACGTTATCATTATCACCATCCGGCTATTGTAAACATTGCAGGAAAACTTTTTCTAACGAAAAAGAACATAAATCGTTCGTATCTCAAAacgaaactaaaaaatattactgcAGAGACCATTCGACGTGCACAGAAAAATATACACGCCACGACCTTATTCAGCATTGCATAGACACCGGAATTCACATACCGGATGTCCGGAAATATTTCCAGAAGGCTCGCTGTAAAGCGTcgcgaattaaaaatttagaggGAGAACCATGCGAAATATGTTTcgaaatatttccaaaaaaagaCTTGCTAGAGAAACATTACAACGATCACAAAGACCAACATTTGTGCGAGATCTGCAAATGGGGTTTCAAAAAAATCATGGACTACGTATGTCACATGCAAGAACACAGTGACGATAAAATGTACGAATGTCCCGTGTGTAATTtgcgaaaagaaaaaatgtacgAAATGCGCATGCACATATTTCAAGCACATGAACAGTTCAAAAGGTTCAGGTGTAATGTGTGCGGAAAAAGATTTTCattttacactttttattacGAACATGTTAAGTACTTCCACAGCGGGGAAAAGCACTTCGTGTGCGACTTGTGCGGCAAAAGGTTCATGTATTCCTGGTACCTGAGTTCTCACAAACAGGCCGATCACAATGACACCccgaaaaaattgataaagtgCTCTCTTTGTCCCGTGAAACTATCTTCAGACAGATCGTTACAAAAACATCTCCAGACACAACATCTTCAAGCTTATTTCGTATGCGACGTTTGCGGAAGAGGTTTCAAGAGTAAGCAAAACCTCAACGCTCATCTAAGGGTGCATCGAGGTGACAAAAGGCACAAGTGCTCATATTGCGAGAAAATGTTTATAACGACCGGTGCTAAAAAGGAACATGAACGGGTTCATACAGGGGATAAACCTCACAAGTGCACGTTTTGTTTGAAGGGGTTCACGCAACGTAGCAGTTTAGTCATTCATTTTCGAAGTCATACCGGTGAACGTCCTTACGTTTGTCAAATTTGTAATCGCGGATTCGTATCGAAAACTGCTTTAGTGAATCATATGAAAAATTGTAAAGGACGAACTGAAGTTGACGAAGAACCTTTTTCGAACTGCAATAATCGTTAA
- Protein Sequence
- MLSKENSESILNTSSTIFIEEISSDEEIVDEIDIKDVQLVPWNVQPSIEFVNCNKEKQKVEYPCEICLEMFNNANALRCHYAYHEPRYTCKKCKKKFKIIIDYICHMHTHGRDKMYKCPKCPFKHTELSELKIHMYSTHNEYKKYKCQKCTKRFSFYTEYNEHMQHHQKMSESAKLVLQSKVPTQCGHCLKKFPTIRLMREHARNKHLLETIECKVCGKEFTTKERLLNHMRVHLKGTELNCLFCDKTFEAEHIKRIHERAHIDNKKFECSMCKKVFLFYRPYQEHIRLYHKAPENACANCGKSFPQAQQLEDHKNVCRSKLKSTTCEYCKAECSSLRKSEEYEESRVAFSDDVSPKTKTPVRDSTKHKNRCKKNFKKKVEELTLSLSPSGYCKHCRKTFSNEKEHKSFVSQNETKKYYCRDHSTCTEKYTRHDLIQHCIDTGIHIPDVRKYFQKARCKASRIKNLEGEPCEICFEIFPKKDLLEKHYNDHKDQHLCEICKWGFKKIMDYVCHMQEHSDDKMYECPVCNLRKEKMYEMRMHIFQAHEQFKRFRCNVCGKRFSFYTFYYEHVKYFHSGEKHFVCDLCGKRFMYSWYLSSHKQADHNDTPKKLIKCSLCPVKLSSDRSLQKHLQTQHLQAYFVCDVCGRGFKSKQNLNAHLRVHRGDKRHKCSYCEKMFITTGAKKEHERVHTGDKPHKCTFCLKGFTQRSSLVIHFRSHTGERPYVCQICNRGFVSKTALVNHMKNCKGRTEVDEEPFSNCNNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -