Amal007009.1
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- -
- Assembly
- GCA_029378335.1
- Location
- CM055656.1:50163-51224[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.3e-05 0.0042 18.5 2.1 1 23 75 97 75 97 0.97 2 10 5.4e-05 0.0052 18.2 4.9 1 23 103 125 103 125 0.96 3 10 5.1e-09 5e-07 30.8 0.5 1 23 131 153 131 153 0.98 4 10 1.9e-05 0.0019 19.6 0.4 1 21 159 179 159 180 0.96 5 10 0.00014 0.013 16.9 3.7 1 23 189 211 189 211 0.98 6 10 1.4 1.3e+02 4.3 12.0 1 21 217 237 217 239 0.93 7 10 2.1e-05 0.002 19.5 4.9 1 23 245 267 245 267 0.97 8 10 5.7e-05 0.0056 18.1 0.5 1 23 273 295 273 295 0.97 9 10 0.00026 0.026 16.0 7.0 1 23 301 323 301 323 0.98 10 10 0.11 11 7.7 4.5 3 23 328 348 326 348 0.95
Sequence Information
- Coding Sequence
- ATGAGTGACGATTCGTTTGGATCAAGAGAGGAAATTGAAACCGTTGTTATAAAAACGGAACCTTTAACATATTTCGATGTCGATTTCGACGAGGATGTAAAACcagttgaaataaaaatcgaaaagTATGAGGAAGATAATCCGACAATAATTGTGCCTATTTATGAAAAGGGCTTATCAGCGAATTGTAATGGAAaccataacattaaaaaaggcAAAGTTTACAATTGTCAGGTATGTGGCAAAAGTTTTAAGGAAAAGAAAGGATTGCATAGTCACAAAATAGTACATGAAGAAAATAGACCTCATGAATGTAAGTTTTGTacaaaacgttttaaatatagaagtaatttaaatgagcatatatacctacatactggAAGAAGGTCTTTTCCATGTAAAGTTTGTGGCAAAAGCTTTTCACAAAAAAGTAATCTTGGAATGCATATGAGAATTCATACAGGAAATAAGCCATACAAGTGTGAATCTTGTGGTCATAATTTTGTCAAGAAAGGGGATCTTGAAAGACATTTACGGATTCAAACTTGCAACAGGAAAACTCAGTTTAGTTGTGAAACATGCGGTAAACAATTGAAATCACATGGGCATCTCATTATGCATTTGAAAACACATAATACTCAAAAATTATACACATGCCCACACTGTGGAAAGCACTTTAAATGCAGAACCTCAATTCACAAACATCTTAGATGTCATACAGGAGAAAAGCCATACAAGTGTGATCTTTGTGAGAAATTCTTTTCACAAAAATGCAATTTACAAAGACATAAAATTCTTCACACTGGTGAAAAACTGTATTGTTGTGATATTTGTAACATGTCCTTTGCTGTAAAGGGTGGTCTGGAAAGACACAAGTTAATTCATAAAGATGAGAAACCACATAAATGTAGCTTTTgtggaaaatgttttaaacgtAAATTTGATGTAAAAATGCATGCTAAAGTCCATGTTGAAATTATATGCAGTATATGTAAACAGTGCTTTCATGACAAAGATAGTTTTGAATTTCATCaggaaaaacatttaaaaaacttaacataa
- Protein Sequence
- MSDDSFGSREEIETVVIKTEPLTYFDVDFDEDVKPVEIKIEKYEEDNPTIIVPIYEKGLSANCNGNHNIKKGKVYNCQVCGKSFKEKKGLHSHKIVHEENRPHECKFCTKRFKYRSNLNEHIYLHTGRRSFPCKVCGKSFSQKSNLGMHMRIHTGNKPYKCESCGHNFVKKGDLERHLRIQTCNRKTQFSCETCGKQLKSHGHLIMHLKTHNTQKLYTCPHCGKHFKCRTSIHKHLRCHTGEKPYKCDLCEKFFSQKCNLQRHKILHTGEKLYCCDICNMSFAVKGGLERHKLIHKDEKPHKCSFCGKCFKRKFDVKMHAKVHVEIICSICKQCFHDKDSFEFHQEKHLKNLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00030458;
- 90% Identity
- -
- 80% Identity
- -