Amal019817.1
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- -
- Assembly
- GCA_029378335.1
- Location
- CM055659.1:24596328-24602376[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.067 6.5 8.4 0.2 2 23 106 127 106 127 0.95 2 22 0.015 1.5 10.5 0.1 1 23 131 153 131 153 0.97 3 22 4.1 4e+02 2.8 1.0 1 23 159 181 159 181 0.93 4 22 0.0021 0.2 13.2 0.8 1 23 187 210 187 210 0.97 5 22 0.00034 0.034 15.6 0.4 2 23 217 239 216 239 0.95 6 22 0.64 63 5.3 0.6 2 21 273 292 272 294 0.93 7 22 0.0031 0.3 12.6 0.2 2 23 499 520 498 520 0.97 8 22 0.023 2.3 9.9 4.3 1 23 524 546 524 546 0.96 9 22 0.021 2.1 10.0 0.7 1 23 552 575 552 575 0.97 10 22 0.015 1.5 10.4 4.3 1 21 581 601 581 604 0.93 11 22 0.002 0.2 13.2 3.6 1 23 609 632 609 632 0.97 12 22 0.13 13 7.5 2.2 2 23 638 660 637 660 0.96 13 22 0.00058 0.057 14.9 1.5 2 23 666 687 665 687 0.97 14 22 0.025 2.5 9.8 2.6 2 23 694 715 693 715 0.86 15 22 0.0046 0.45 12.1 1.0 1 23 721 744 721 744 0.94 16 22 3.1e-05 0.0031 18.9 3.5 1 23 749 771 749 771 0.98 17 22 2.8 2.8e+02 3.3 2.2 2 23 778 800 778 800 0.92 18 22 0.0009 0.088 14.3 0.9 2 23 806 827 805 827 0.96 19 22 0.22 22 6.8 4.4 1 22 830 851 830 853 0.85 20 22 6.7e-07 6.6e-05 24.1 1.1 1 23 859 881 859 881 0.99 21 22 0.45 44 5.8 0.9 5 21 891 907 887 908 0.88 22 22 0.0012 0.11 14.0 0.1 3 23 997 1017 996 1017 0.97
Sequence Information
- Coding Sequence
- ATGGAATTCGAAAATCCCGAAGACAGTAAACTAGAACATTATAAGAGTCACACTCATCTACCTCATCATTTGGGACACCAAGAAGTAGAAAAACCTGAAAAAAGTTACACTCAAGgcgaagaaaataacaaaattgtgGAACCACCActcgaaaagaaaatgtattacTGCCAACACCATAAAACGTGCACTGCAGCTTTTACCCAAAGTGAACTTTTCACACATTGCATGCTCCACGACATTGAAATCGGGAACCcaaaaagatattttcaaaatgcaCTTCACAAAGTAAAGCCAACAGTCAGAATTGAAGAATCCTGCGAAATATGTTTCGAATTATTTCCCACTAAGCTAGACCTCACTGTTCATTACGAAAATCACGAAAATGTTTACAAATGCGTCGATTGCAATGCGggatttaaaagaattatagACTACATCGTTCATGCAAAAAATCATAGAAAAGACAACATGTACCAATGTCCTTCGTGTGATGTACAAGCAGACAATAGAACAAGAATTTCAAAGCATCTTCATAGCCACGAATTTTATAAACGATACAAGTGCAAAATATGTGAAAGACGTTTCCCAACTTATCAGCCTTATAATGAGCACGTCAAAATTAATCACTTGGGCGGACCTCCGCTTACCTGCGATATATGTGGTGAAGATTTTAAATCCACCGCAAATCTATCCTTGCACAGACTCAAAAAACACAGCGAATGTCGTTTATGTgATGAGGACATAGATATTAAAGAATCTTTACTGGTCAAAATGGAATTCGAAAATCCCGAAGACAATAAACAAGAACAAGTACAATGTGATGtatgtttgaaaatgttaGTAAATTGGTATGTTTTACAAGAACATTATAAGTGTCACACTCATCTACCTCATCATTTGGGACCCCAAGAAGTACAAAAACCTGAAAAAATTAACACTCAAGgcgaagaaaataacaaaattgtgGAACCACCActcgaaaagaaaatgtattacTGCCAACACCATAAAACTTGCACTGCAGTTTTTAACCAAAGTGAACTCCTCAAACATTGCAAGCTCCACAACATTGAAATCGACGATACAAGTGCAAAATATGTGAAAGACGTTTCGCAACTTATCAGCCTTATAATGAGCACGTCAAAATTGATCACTTGGGCGGACCACCGCTTACCTGCGAGATATGTGGTGAAGATTTTAAATCCTCCGCAAATCTGTCCTTACACAGAATCAAGAAACACAGCAAATGTCGTTTATGtggACATTAAACTTAAGGGTGGCACACTGCTAAGTATGCTACAATACGTACCATCAAGTGCCCGGGAGCGGTGGGACGACACGCCTTCATTGAAGACACTTTGTGGTACATTTCAAAGCATAAGCAAGGAGTTCGTTTCAACTAATGAAGATCTTATGCTAATCGAAGTAGAGATTGAGGCAAACGAAGAGATCTCTAACATAAATAATGACCAACAAGACATCGTCGAAAAACCTTGTGAAATATGCCTGGAAATGTTCGAAagtaaacaattgttacaagAACACTACAAAATTCACGGTGACCAGCATTTCTGTTACGAATGCAACCAcggttttaaattattagcgGACTTTATCAAGCACATGCGTCAGCACAGTGACGACATGCTATACGAATGTCCTGTATGTCCTACGAAAGAAAAATCATTTTCCTTTTTGCAAAGACACATTTACACAAACCATGAACAATTCAGGAAGTATAAATGCAAAGTATGTGGCAAACGCTTTCCTTCTCATGGACCGTATCGGGAACATGTGAAATGTTTCCATGCAGAGAAAAACTTTGCATGCGACATTTGTGGGAAACAGTACATTTTTAAGCGGTATCTTTTAAACCACAAAAGGAAATGCCATTCTTCCATCAATACCAAATGTCGACATTGCGTAGAAGTATTTCCATCTGTTCGTTTGATGCATCGTCATATCGCTACAAACCATTCGGAACTCGCGATGAAGTGTAAAGTGTGTGGCAAAAGTTGTATCGACAACATCTATTTGTCCGGTCACATGAGTAAGCATTCGGGTGAAAGAAATTTGAAGTGTTCCTACTGCGACAAAACCTttaaaacattgcatatcaAAGAAATACACGAACGGTCCCATACGGGGGAATACCCTTTCAAATGCGAAAAATGCGGTAAAGGGTTCACATTCGAGCTTCCCTACATCCAGCATGTTCGTTACTATCATAACGAAAAGTCTTTTACATGTAAAAAATGCGGGCAACGCTTTAGATATTTAGCTCACTTGGAATTACATTTGAAATCTCATCCATTCAAAAGTCCACGCGAATGCCAACATTGCCAGGAACAATTTTCGTTTGAGtacataaaagaaaatcacATACGTTCTAAGCACCCAGAAAGTCTATTGAAGTGCAAAGTGTGTGAAAGAACGTTCACggaagaaaagaaattaaagataCATTTAGTTAGCCACAAAGGCCACAAATGCGACTATTGCGAAAAAGTGTTCGATAGCCCTCATCGTAAGCGTAGCCACGAACATTGGGCCCATAAAAACGAAGACTCGTTTAAATGTAACGTTTGCAACAAGACGTTCAAACGACAATTGGCACTCAATGGACATATGCGCGTGCATGTCGAAAAACAGCGTTTCCTATGCATTTTATGTAACCGGAATTTTGAAACTTCAATTGAACTTTGCAGTCACCTAAACAAGTGTAAGGCCAGGAATAAACAAGAACCTCCTGAACAATCTTCTTTATTGCAGTATGACGATGATCAAATTGATGTGaaagattctgtgttgatcaAATCTGAACCGATAGATGAAGAGTTTGAATTTAATGAagaATGCTCTTCGTTTGATGATGAAATAGATACAAAAGATACTTTACTAATGAAGATGGAATTTAATAACCCTAAAGAAGATACAAAAGCCAAAGCCCTACATTACTCACAAGGTGGCTACCTTGAAAGGCCTTGCGAAATATGtttggaaatgttcgagaacGCTAAAGAATTACGACAACACTACAAAATTCACGACCCATCAACACTTTTGTGA
- Protein Sequence
- MEFENPEDSKLEHYKSHTHLPHHLGHQEVEKPEKSYTQGEENNKIVEPPLEKKMYYCQHHKTCTAAFTQSELFTHCMLHDIEIGNPKRYFQNALHKVKPTVRIEESCEICFELFPTKLDLTVHYENHENVYKCVDCNAGFKRIIDYIVHAKNHRKDNMYQCPSCDVQADNRTRISKHLHSHEFYKRYKCKICERRFPTYQPYNEHVKINHLGGPPLTCDICGEDFKSTANLSLHRLKKHSECRLCDEDIDIKESLLVKMEFENPEDNKQEQVQCDVCLKMLVNWYVLQEHYKCHTHLPHHLGPQEVQKPEKINTQGEENNKIVEPPLEKKMYYCQHHKTCTAVFNQSELLKHCKLHNIEIDDTSAKYVKDVSQLISLIMSTSKLITWADHRLPARYVVKILNPPQICPYTESRNTANVVYVDIKLKGGTLLSMLQYVPSSARERWDDTPSLKTLCGTFQSISKEFVSTNEDLMLIEVEIEANEEISNINNDQQDIVEKPCEICLEMFESKQLLQEHYKIHGDQHFCYECNHGFKLLADFIKHMRQHSDDMLYECPVCPTKEKSFSFLQRHIYTNHEQFRKYKCKVCGKRFPSHGPYREHVKCFHAEKNFACDICGKQYIFKRYLLNHKRKCHSSINTKCRHCVEVFPSVRLMHRHIATNHSELAMKCKVCGKSCIDNIYLSGHMSKHSGERNLKCSYCDKTFKTLHIKEIHERSHTGEYPFKCEKCGKGFTFELPYIQHVRYYHNEKSFTCKKCGQRFRYLAHLELHLKSHPFKSPRECQHCQEQFSFEYIKENHIRSKHPESLLKCKVCERTFTEEKKLKIHLVSHKGHKCDYCEKVFDSPHRKRSHEHWAHKNEDSFKCNVCNKTFKRQLALNGHMRVHVEKQRFLCILCNRNFETSIELCSHLNKCKARNKQEPPEQSSLLQYDDDQIDVKDSVLIKSEPIDEEFEFNEECSSFDDEIDTKDTLLMKMEFNNPKEDTKAKALHYSQGGYLERPCEICLEMFENAKELRQHYKIHDPSTLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -