Amal019812.2
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- -
- Assembly
- GCA_029378335.1
- Location
- CM055659.1:24578938-24582950[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.073 7.2 8.3 0.2 2 23 202 223 201 223 0.96 2 21 0.18 18 7.1 2.6 1 23 227 249 227 249 0.94 3 21 3.1 3e+02 3.2 0.3 1 23 255 278 255 278 0.89 4 21 0.093 9 8.0 8.2 1 23 284 307 284 307 0.95 5 21 0.014 1.4 10.5 1.8 1 23 313 336 313 336 0.97 6 21 0.00034 0.033 15.7 1.0 3 23 345 366 343 366 0.95 7 21 8.3e-06 0.00081 20.7 1.3 3 23 373 393 371 393 0.96 8 21 0.13 13 7.5 0.8 1 23 399 421 399 421 0.95 9 21 5.4e-05 0.0053 18.1 1.2 1 23 427 449 427 449 0.99 10 21 0.062 6.1 8.5 0.0 1 21 455 475 455 476 0.91 11 21 1.7 1.7e+02 4.0 0.6 3 12 558 567 556 570 0.86 12 21 0.00045 0.044 15.3 0.7 3 23 635 655 634 655 0.99 13 21 0.0023 0.23 13.0 2.2 1 23 659 681 659 681 0.99 14 21 8.9 8.7e+02 1.7 0.5 1 9 687 695 687 710 0.70 15 21 0.0047 0.46 12.1 2.0 1 23 716 739 716 739 0.96 16 21 0.01 1 11.0 5.3 1 23 745 768 745 768 0.96 17 21 0.25 24 6.6 1.9 2 23 777 799 776 799 0.96 18 21 2.1e-05 0.002 19.5 1.1 2 23 805 826 804 826 0.96 19 21 0.00095 0.093 14.2 2.0 1 23 832 854 832 854 0.98 20 21 4.2e-05 0.0041 18.5 4.2 1 23 860 882 860 882 0.98 21 21 2.3e-05 0.0022 19.3 1.9 1 21 888 908 888 909 0.95
Sequence Information
- Coding Sequence
- ATGTGGCTGGTTTTATGGTCTCAATGTTTATCCATTGAACCCATCCAACAGGGGCAGCACTGCACGTGTAATTCAATTCTTCCACCTCGTCCATCTCTTgcattacaaataaaaaataattttgaatcgAAAATTGGACACATAAGCTTCGGACAACCATCAATTAAAGACGAACTAGAATTGGgtgaaaattgtttaaaaatggaGGACGAAAGCAATTATTACGAAATGGAAGGGAATCTTTGGCGTGAATCGAAATACGATGTAGATTCCTCTGATAACTCTGAAACCATGTTCTTTGACGTAAGCGATGGTCCTGCTATAAAACGAAAATCTGAAGGACTTAGTGTCGCCTTATCTGACATAGGTTTTTGTAAACACTGCAAGGAATACTTTCCAAACGAGgttgaacataaaaaatacgtaaatgTAGTGGATGTGAAAAGGTACTACTGCAGATATCACGCATCATGTTCAGAAAAGTTCACACGACACGGACTCGTCCAGCACTGCATCGATAGTGGAATTTATATAAccgataataaaaattttttccgcGTGGCTCGTTACAAAAACACAAGAAACCTGAATTTAGAAGACAAACCGTGTGAAATTTGTTTCGAATTGTTCCCTAATAAAGAAAAGCTAGATGATCATTACTATACCCACGAAGACAAACACTTTTGCGAGGTATgcaaaaaaggttttaaaaaaatattggattACGTTCGTCATAAGCAAGAGCATACTAGCCACAAGATGTACGAGTGTCCAGTATGTGCTGAACGCaaagaaaaaatgtaccaATTGCGTACTCACTTAATCCAAACCCACGAACAATTCAAACCGTTCAAGTGTAAAGTGTGCGAAAAACAGTTTTCGTACTACCACGCCTACCAACACCACTCGAAGTATTTTCATAGCACAGACAAAAGATTTACTTGCGATCTATGCGGAAACAAGTTCATGCATTTGTGGTACTTAAATCTTCACAAACAACGCGCCCACTGTAACCCGAACGCATCGAGCAACTGCTCGTATTGTCCCGCTAAATTTTCGACAAAAAGAACTTTGCTCAGTCACCTTAGGGAACAACATCAGAAAGCTCTCTGGTTTTGCAAGGTTTGcggaaaacaatttaaaaggaaaattaacCTTCTCAATCATCTAAAACTACACGAAAATGATAAAAGGTACGAATGTTCGTATTGTgaaagaaagtttttgaaagTAAGTGCTAGAATAAAACACGAACGGGTTCATACGGGTAATAAACCATATAAATGTGATCTCTGTTCGAAAGCATTCGAACAGCATAACGGTTTAGTGGTTCATCAAAGGAGTCATTCCAGGAAACGTCCGTACATTTGTCAAATATGTGATCGCGGATTCGCATCGGAAACTATTTTAGTGAATCATCTTAAAAGATGTAACGGGAAAGTCGACGAACGAAAAAGAAGATCGATAAAGAACATAAAATCCAATTTAGAAGCGGTTCGAATTAGACATCGTAGAGTAATCAAAAGAAAAGTCTACCACCAGTCTGATCCATCATGTAGACAAAAACTAGAAAGGGTTTGTAAGGGGATTAAAGCAGACAAAGAGGCAGTTACTTCTTCAGACGACGAAAATAGGGTTAatctaactaaaaataaaacttctacaattttttgtagACACTGCAACAAACGGTTCGACGACGAAACAGAGCACGACAATTTTACAGCCtccgaagaaaaaaaatattactgcCATAATCACCTGGTCTGCACAGAAAAATTCACAAGGCATGAGCTTATTAAGCATTGCAAACATTCAGGAATTGATATACCAAACTACCGCAAGTTTTTCTTGAAAGCCCGATCAAAAAACCCAAGAATGGAACATCAACAGAAATTATTGTGCGAAATCTGCTCTGAATCGTTTGACTTTAAAAAGAGTCTCGAGGAACATTATAAAACCCACGAAAATCAATACACTTGTGACGTGTGTCACCAAGGttttaaaaagatattggATTATACACTTCATATGCAAACTCATAGCGAAGAGAAACTGTTCAAATGTCCTTTGTGTGATTTCAAGAAAGAAAAGGGCTACCAAATACGCATCCACATCCTCCAAACTCACGAACAGTTCAAAAAGTTCAAGTGTGACGTGTGCAGTAAACGATTTGCAAACTACCCTTTCTTCCAGGAACACGTGAAGTACTACCACAGCGGAGAAAAGCCattcaaatgtgaattttgcaataaaaaatactattaCTCCCAGTACTTGACGACCCATAAAAAATACGAACACTTTGAAAAACCTTCTGAACAAGTACAATGTTTCTTGTGCAATATCAAATTGCCGACCCTGAGGGCCATGCAAAGACACCATCGGTCCCGTCATCCGAAAGAACTTCTCATTTGCGACATCTGCGGAAAATACTTTAAGTCGAAGAAGAACTTCAATTTGCATTCCCGGGTTCATTCGGGAGACAAAAGGCACAAGTGTTCTTATTGTGAGAAACGATTCATCAGGGCTGAAGCTAAAAAGGAACACGAAAGGATTCACACGGGTGACAGACCATATTGTTGTTCATATTGTGGAAAGAGTTTTACCCAAAGGACCAGTATGGTCATTCACACACGTAATCACACAGGTGAACGTCCTTATGTTTGTCACCTTTGTAACAAGGGTTATACATCAAAGGCGAACTTAACACACCATCTCAAGAGTTGTTTGGGATCTGGacccttaaataaataa
- Protein Sequence
- MWLVLWSQCLSIEPIQQGQHCTCNSILPPRPSLALQIKNNFESKIGHISFGQPSIKDELELGENCLKMEDESNYYEMEGNLWRESKYDVDSSDNSETMFFDVSDGPAIKRKSEGLSVALSDIGFCKHCKEYFPNEVEHKKYVNVVDVKRYYCRYHASCSEKFTRHGLVQHCIDSGIYITDNKNFFRVARYKNTRNLNLEDKPCEICFELFPNKEKLDDHYYTHEDKHFCEVCKKGFKKILDYVRHKQEHTSHKMYECPVCAERKEKMYQLRTHLIQTHEQFKPFKCKVCEKQFSYYHAYQHHSKYFHSTDKRFTCDLCGNKFMHLWYLNLHKQRAHCNPNASSNCSYCPAKFSTKRTLLSHLREQHQKALWFCKVCGKQFKRKINLLNHLKLHENDKRYECSYCERKFLKVSARIKHERVHTGNKPYKCDLCSKAFEQHNGLVVHQRSHSRKRPYICQICDRGFASETILVNHLKRCNGKVDERKRRSIKNIKSNLEAVRIRHRRVIKRKVYHQSDPSCRQKLERVCKGIKADKEAVTSSDDENRVNLTKNKTSTIFCRHCNKRFDDETEHDNFTASEEKKYYCHNHLVCTEKFTRHELIKHCKHSGIDIPNYRKFFLKARSKNPRMEHQQKLLCEICSESFDFKKSLEEHYKTHENQYTCDVCHQGFKKILDYTLHMQTHSEEKLFKCPLCDFKKEKGYQIRIHILQTHEQFKKFKCDVCSKRFANYPFFQEHVKYYHSGEKPFKCEFCNKKYYYSQYLTTHKKYEHFEKPSEQVQCFLCNIKLPTLRAMQRHHRSRHPKELLICDICGKYFKSKKNFNLHSRVHSGDKRHKCSYCEKRFIRAEAKKEHERIHTGDRPYCCSYCGKSFTQRTSMVIHTRNHTGERPYVCHLCNKGYTSKANLTHHLKSCLGSGPLNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -