Basic Information

Insect: Agrilus mali
Gene Symbol: -
Assembly: GCA_029378335.1
Location: CM055663.1:1739181-1740834[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1e-05 0.00097 20.5 3.4 1 23 15 37 15 37 0.98

2 11 7.5e-05 0.0073 17.7 3.1 1 23 43 65 43 65 0.99

3 11 0.0025 0.24 12.9 0.5 1 23 70 92 70 92 0.96

4 11 1.9e-07 1.9e-05 25.8 1.7 1 23 98 120 98 120 0.99

5 11 8.5e-07 8.3e-05 23.8 4.2 1 23 126 148 126 148 0.99

6 11 1.4e-06 0.00014 23.2 0.9 1 23 154 177 154 177 0.96

7 11 0.00017 0.017 16.6 2.0 1 23 185 207 185 207 0.97

8 11 6.3e-05 0.0061 18.0 6.7 1 23 213 235 213 235 0.99

9 11 4.7e-07 4.6e-05 24.6 1.7 1 23 241 264 241 264 0.97

10 11 0.00034 0.033 15.6 9.1 1 23 272 294 272 294 0.96

11 11 7.7 7.5e+02 1.9 0.6 5 23 338 356 335 356 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1e-05	0.00097	20.5	3.4	1	23	15	37	15	37	0.98
2	11	7.5e-05	0.0073	17.7	3.1	1	23	43	65	43	65	0.99
3	11	0.0025	0.24	12.9	0.5	1	23	70	92	70	92	0.96
4	11	1.9e-07	1.9e-05	25.8	1.7	1	23	98	120	98	120	0.99
5	11	8.5e-07	8.3e-05	23.8	4.2	1	23	126	148	126	148	0.99
6	11	1.4e-06	0.00014	23.2	0.9	1	23	154	177	154	177	0.96
7	11	0.00017	0.017	16.6	2.0	1	23	185	207	185	207	0.97
8	11	6.3e-05	0.0061	18.0	6.7	1	23	213	235	213	235	0.99
9	11	4.7e-07	4.6e-05	24.6	1.7	1	23	241	264	241	264	0.97
10	11	0.00034	0.033	15.6	9.1	1	23	272	294	272	294	0.96
11	11	7.7	7.5e+02	1.9	0.6	5	23	338	356	335	356	0.87

Sequence Information

Coding Sequence: ATGGGCAAACACCTCGTAAGTGACATGATGGGCAATAAGCCCCACAAATGTGAAATATGCGAAAAGACGTACATACGCGCCAGCTTCCTCAAAAAGCACATGTACAGGCACAAAGACCAAAAACCctacaaatgtaaatattgcaaaaaGCTGTTCAGGGCAAAGTCGAAGTGGAGGGCCCACCTAAACACCCACGAAAGGAACACTTACGAGTGCGCTATATGTTCTCAAGTGTTTTCAACGAGACATATTTTACTTATTCACATGACCGAACACAATAACCAGAAACCGTTCAAATGTGAAACCTGCGGCAAATCGTTTTCCATGAAGATTACTTTGAATAAGCACATGAAAATTCATAATGGCAACAAACCGTTTCAGTGTGAGGTGTGCGAAAAGTGTTTTTCTCGTAAGAACACCCTGAGCGAACACATGAAAACCCACCTGGGCCAAAAACCGTTCAAATGCGATGAATGTGGCAAAACGTTTACGAAAAAGTTCTCCCTCTCGCTCCACATAAACGGTATTCACGGTTATGGAAATATGAGGACGTACAAGTGCAACCTGTGCCAAAAGACACTCTCaagcaaatattattttaaagtacaCCTGGCCGAACACGACACCAAACGTCTCTTTAAATGTGAAACTTGCGGGAGATGTTTCGTGTTAAAATGCACCCTAAAGGAACACATGAAAACCCATTTACGCGAAAAAGCGTTCCAGTGCGAGCAATGCGGTAAAACATTCACGCGAAAGTTTTACCTCTCTGtccatataaaaaatatccaTAAGCACGACATAAACCTTTTACACGATTGTCACATGTGCAACAAACAATTCAGGAACAAAAGGCATCTGGAGCAGCATGTCAAAAAACATGCCCAATCCGATTGCCCGTTATGTTTAAAATCGACTCGAGAATGTAATTGTTCCTGGAATCCCGCAGACGAAATGTGGGAACGTTTGAGAAAACGTTTGGCTAGAGAACATTTAATGATGAGGTGTATAACATGCAACAAATCGATACTGCGATATACCCAACTCAAACTCCACTTGGCGATACATGGCGAAGTTAAGTGCATCCCttgcaacaaaaattacaaggaTTGCCACTGCTGTGATGATTATATGGAGGTAGCGAAAACTGTTAACACTTACAAGAAACCTGTGAGTGGtgttaatgttaaaaatgaagttgttgtaaaaaaagaaaaggacgACGAATCTATCGACTACTTATCATCTGTATATGAAACGATTATTCCCAAAAATGATAATAACGATTGTTCAGAAGTGAAAAAAACCGTAAGGACTTATCAAAGAAGTAACAAAAGAGTTGAACAACAAGTTGTTGTTAAAGAAGAAACTTTGTTAGACGTTAAGGAATCTGTTACGAAAGTTGAGGAGGAGGTATGTAAAGAACCAATGGAAATTGTTGTACCAAAAGTTGAACCCAAAGAAGAAAACGAAGAGTATTTTGAAGGGGGCGAAAACCCCTTTGCGTCGTATCCTactactaataataaatatactgcTGAAGTCGACGAAGAAGACGGTAACAAGAAGGCCTTAACCGTCAAAGTGGAAACCATAGAGATGTAG
Protein Sequence: MGKHLVSDMMGNKPHKCEICEKTYIRASFLKKHMYRHKDQKPYKCKYCKKLFRAKSKWRAHLNTHERNTYECAICSQVFSTRHILLIHMTEHNNQKPFKCETCGKSFSMKITLNKHMKIHNGNKPFQCEVCEKCFSRKNTLSEHMKTHLGQKPFKCDECGKTFTKKFSLSLHINGIHGYGNMRTYKCNLCQKTLSSKYYFKVHLAEHDTKRLFKCETCGRCFVLKCTLKEHMKTHLREKAFQCEQCGKTFTRKFYLSVHIKNIHKHDINLLHDCHMCNKQFRNKRHLEQHVKKHAQSDCPLCLKSTRECNCSWNPADEMWERLRKRLAREHLMMRCITCNKSILRYTQLKLHLAIHGEVKCIPCNKNYKDCHCCDDYMEVAKTVNTYKKPVSGVNVKNEVVVKKEKDDESIDYLSSVYETIIPKNDNNDCSEVKKTVRTYQRSNKRVEQQVVVKEETLLDVKESVTKVEEEVCKEPMEIVVPKVEPKEENEEYFEGGENPFASYPTTNNKYTAEVDEEDGNKKALTVKVETIEM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -