Basic Information

Insect: Agrilus mali
Gene Symbol: -
Assembly: GCA_029378335.1
Location: CM055662.1:2183101-2185174[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0093 0.91 11.1 3.8 1 23 135 158 135 158 0.98

2 16 0.005 0.49 12.0 1.7 1 23 164 186 164 186 0.97

3 16 0.013 1.3 10.7 0.3 1 23 192 215 192 215 0.94

4 16 0.0058 0.57 11.8 6.0 1 23 223 245 223 246 0.94

5 16 4.6 4.5e+02 2.6 9.0 1 23 253 276 253 276 0.97

6 16 0.00066 0.065 14.7 0.4 2 23 285 307 285 307 0.92

7 16 0.003 0.3 12.7 3.0 1 19 323 341 323 342 0.96

8 16 0.078 7.7 8.2 0.4 2 23 401 423 400 423 0.94

9 16 0.0047 0.45 12.1 2.2 1 23 433 455 433 455 0.98

10 16 0.0011 0.11 14.0 2.7 1 23 461 483 461 483 0.96

11 16 5e-05 0.0049 18.3 1.2 2 23 490 512 489 512 0.96

12 16 5.3e-05 0.0051 18.2 0.6 1 23 520 542 520 542 0.99

13 16 0.00012 0.011 17.1 2.2 1 23 548 570 548 570 0.96

14 16 3.9e-05 0.0038 18.6 0.9 1 23 576 599 576 599 0.98

15 16 0.0002 0.019 16.4 1.3 3 23 615 635 613 635 0.97

16 16 8.4e-05 0.0083 17.5 3.6 1 23 641 664 641 664 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0093	0.91	11.1	3.8	1	23	135	158	135	158	0.98
2	16	0.005	0.49	12.0	1.7	1	23	164	186	164	186	0.97
3	16	0.013	1.3	10.7	0.3	1	23	192	215	192	215	0.94
4	16	0.0058	0.57	11.8	6.0	1	23	223	245	223	246	0.94
5	16	4.6	4.5e+02	2.6	9.0	1	23	253	276	253	276	0.97
6	16	0.00066	0.065	14.7	0.4	2	23	285	307	285	307	0.92
7	16	0.003	0.3	12.7	3.0	1	19	323	341	323	342	0.96
8	16	0.078	7.7	8.2	0.4	2	23	401	423	400	423	0.94
9	16	0.0047	0.45	12.1	2.2	1	23	433	455	433	455	0.98
10	16	0.0011	0.11	14.0	2.7	1	23	461	483	461	483	0.96
11	16	5e-05	0.0049	18.3	1.2	2	23	490	512	489	512	0.96
12	16	5.3e-05	0.0051	18.2	0.6	1	23	520	542	520	542	0.99
13	16	0.00012	0.011	17.1	2.2	1	23	548	570	548	570	0.96
14	16	3.9e-05	0.0038	18.6	0.9	1	23	576	599	576	599	0.98
15	16	0.0002	0.019	16.4	1.3	3	23	615	635	613	635	0.97
16	16	8.4e-05	0.0083	17.5	3.6	1	23	641	664	641	664	0.97

Sequence Information

Coding Sequence: atgcgAATTGTGAATGAAGAAGTTTGTTATACATGCCTAAAAGAGAATATTCAGCTAATAAGCACTCTTGAAGTGGATTCTGATAGCATAGATATCAAAACtaagctgaaattttgtgtccCCGAAGTGGAATGGACAAAAGGTTTTATTTGTACTTCTTGCGCAGAATTATTAAATCAACTACATGTATTCAAGCAACAGTGTCTAAAGTCGAATGAGATTCTCATTCAAAAACATGAGAGGGTTCtgacagaaaattttaaaagtgaaGATGCCGAACAGTCCGACCATGAAAAGGATCTAAGTGACAATGACATATTCATAGAttcaatacaaaattttgaaactgaGGACCTAGCAGAGGAAACCAACAGTGCAAATGAAACAGACTTACTGTCAGAATACAAATGTAACGTTTGCGAAGACTCATTTGAACATcgcaaattattattcaatcataagaagaaaatacacaaagaAGAACGTCCATTCAACTGTCTTTTCTGTGAGCGACTTTTCGATCACAGTGGAGAGCTGAAACGCCACGAACAAGTACATCTAAATCAGAGGAATTTTACCTGCGACATCTGTTATAAATCTTATAACACAGCAGTGATCCTTTCAAAGCACAAACTCGTTGTTCATACAGAACAAGAAGAATGGAAACACATTTGCAAACATTGTAACAAGAAATATCCAATTAAATCAAGCCTGGACCAGCACATTCTCAGACACCACACAAATGCAGGCAATACCTTCATATGCTATCACTGTAACGAATGCCACGACACCAGAAATTCGCTCATCCATCATATCAAATCCAAACACACCTTGAGGATTGTACGTACTGAAGAATGTGAAATATGCAAACAACCATTTGATGATCAGAGACTTCTGAATAAGCATTTGTTCAACGAACATAGTTTGCGAGTAAATATCAAATCTTACGCGAGACGAACTAAAAAGTTTTCATGTGATAAGTGTGGAAAAAGGTATACAACGACCCATAAGCTCAAATTACACTCACCTAATTGTGATGGCATCAAAAGGCACACcagaaagaaaaatatcaaagaagaagacgaagacAACGACAAAAATAATTGCACTGAAGAAGAAATGACTGATTTTAAAGATGAACAAAATGATTCTCAACAAAAGACTCAATCACAGGGGAAAAAGCAGAGAAAAGTAAGCCTCAAATGCGAAGTCTGCAATGAATTCACAGGAACGTACAAGAAGCTAATGGCTCATGTGTCGTCCAACCACGACATTGACCCAGAAACCCTAAGACCTTATGAATGCGTCcaatgtaaaacaaaatacaaatcttCCTTGCAGTTGGCAAATCATAAGCGTTATCATTCGACAGAGAAAGTACATATGTGCAGTTTTTGCGGCAGGGGGTTCACCCAGAAAAAAGACATGCTCAACCACGAGAAACTACATTCAGATCGCAGAGACGTCCAGTGCGAGATGTGCCCCAAAAGATTCCATACGAAAAACTACTTACGATCGCACATACTTGTCGTGCACACAGATCGAAGCCTCTGGAAGTACACTTGTCCGTACTGCAGTCGAAAGTACGCAATGAAATCAAACATAGACGCACACATAAGACGACATACTGGGGAGAAGCCGTTTGCATGTCATTTGTGCGACAAAAAATTCGCGGACAAGGCTGTTTTGCAACGACACTTTTACACGCACTCAAACGTGCGAAACTTTAAGTGCGACTATTGCGAAAAAGAGTACAAAAGCAATGACGTGTTGAAGATACACTTGAAGAAAGCTCACGACGTGGGAAACGCAAAGGTTCCTATTCCAGTTAAAAAATTTGGCTGCGACTTTTGCCCGAAAATGTTCTCGGCCAAAAATAAACTCAGAAGACACATGTATTCGCATACAGGAGAATTACCGTTTTCTTGCTACGTTTGTGAGAAAAAGTTTACCGACCGGTCTTATGTTAAACATCATTTAAGATCTGTACATAATATTCAAGAAGTTAGTCAAGATTAA
Protein Sequence: MRIVNEEVCYTCLKENIQLISTLEVDSDSIDIKTKLKFCVPEVEWTKGFICTSCAELLNQLHVFKQQCLKSNEILIQKHERVLTENFKSEDAEQSDHEKDLSDNDIFIDSIQNFETEDLAEETNSANETDLLSEYKCNVCEDSFEHRKLLFNHKKKIHKEERPFNCLFCERLFDHSGELKRHEQVHLNQRNFTCDICYKSYNTAVILSKHKLVVHTEQEEWKHICKHCNKKYPIKSSLDQHILRHHTNAGNTFICYHCNECHDTRNSLIHHIKSKHTLRIVRTEECEICKQPFDDQRLLNKHLFNEHSLRVNIKSYARRTKKFSCDKCGKRYTTTHKLKLHSPNCDGIKRHTRKKNIKEEDEDNDKNNCTEEEMTDFKDEQNDSQQKTQSQGKKQRKVSLKCEVCNEFTGTYKKLMAHVSSNHDIDPETLRPYECVQCKTKYKSSLQLANHKRYHSTEKVHMCSFCGRGFTQKKDMLNHEKLHSDRRDVQCEMCPKRFHTKNYLRSHILVVHTDRSLWKYTCPYCSRKYAMKSNIDAHIRRHTGEKPFACHLCDKKFADKAVLQRHFYTHSNVRNFKCDYCEKEYKSNDVLKIHLKKAHDVGNAKVPIPVKKFGCDFCPKMFSAKNKLRRHMYSHTGELPFSCYVCEKKFTDRSYVKHHLRSVHNIQEVSQD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00030436;
90% Identity: -
80% Identity: -