Basic Information

Insect: Agrilus mali
Gene Symbol: -
Assembly: GCA_029378335.1
Location: CM055654.1:30313061-30314751[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0001 0.01 17.3 0.1 2 20 228 246 227 248 0.93

2 10 0.0011 0.11 14.0 1.7 2 23 256 277 255 277 0.95

3 10 5.9e-05 0.0058 18.0 3.7 1 23 283 305 283 305 0.98

4 10 1.5e-05 0.0015 19.9 0.1 1 23 311 333 311 333 0.99

5 10 5.1e-07 5e-05 24.5 1.4 1 23 339 361 339 361 0.97

6 10 4.3e-06 0.00042 21.6 5.5 1 23 367 390 367 390 0.97

7 10 0.0017 0.16 13.5 0.2 1 20 396 415 396 418 0.91

8 10 1.4e-06 0.00013 23.2 3.5 1 23 424 446 424 446 0.99

9 10 0.036 3.5 9.3 9.2 1 23 457 479 457 479 0.97

10 10 1.9e-05 0.0018 19.6 1.5 1 23 483 505 483 505 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0001	0.01	17.3	0.1	2	20	228	246	227	248	0.93
2	10	0.0011	0.11	14.0	1.7	2	23	256	277	255	277	0.95
3	10	5.9e-05	0.0058	18.0	3.7	1	23	283	305	283	305	0.98
4	10	1.5e-05	0.0015	19.9	0.1	1	23	311	333	311	333	0.99
5	10	5.1e-07	5e-05	24.5	1.4	1	23	339	361	339	361	0.97
6	10	4.3e-06	0.00042	21.6	5.5	1	23	367	390	367	390	0.97
7	10	0.0017	0.16	13.5	0.2	1	20	396	415	396	418	0.91
8	10	1.4e-06	0.00013	23.2	3.5	1	23	424	446	424	446	0.99
9	10	0.036	3.5	9.3	9.2	1	23	457	479	457	479	0.97
10	10	1.9e-05	0.0018	19.6	1.5	1	23	483	505	483	505	0.96

Sequence Information

Coding Sequence: aTGAGAAAAGAGGAAGCATCTACTACTGTAGCACTCAATAGTATGTGCAGATCATGTCTTTCAGAAAAAGGTCATCTAAAACATATATTTTCATCAAGCATTTCAAAAATGATTGAATTTTGCATGTCAACATCggtaaATGAAAACGATAAACTACCTAATCAAATTTGCGTTTCATGTTTTCATCATATTGCaagatacgTCAAAAAGTTAGCAGAAGAACTAAGACATAGTAATGAAATTTGTTCTGAAGAAGTGGCTGAAATCgataacgaaataaaaaataagatcaagcgatttaagaaaattaatgatagAAAAGGGAATAGTGCAGAAACCAAAACAGATTCTGTAAATGATGTAGATGATTCACCTTTATCAATTACCCAGCTCCAGAATGATGGTAACAccttacttaaaaataatagtgcAAATAAAACAGATAGAACAgatgattatttaaaaattagtcaTATATGTAATTCTGAGGATGCTAGTCTAGAAATTGCAGGGGAGGTTGTTATTCCAAGTGATCCTCCTCCTTTGGTATTAATTCCAGTTGATTGTACATCATCTCCctcttttgaaaatatatccAAAAAACTTCCAAATGATCCACCACCCCTTACGCCCCTTGCTCCTACATTGTCACCGCAGTctatagaaattgaaataccTCTGCAATGCAGTATCTGTTCAGAAACATTTGTTACCCCAGACGAACTTAAGCAACACCGCATAAACACCTGTCAATCGGTTTCACTGCATTGTAATGTATGCAAAAAGGCTTTTACTGACCGTAAACGTCTTATTGGTCATCTAAAGGGTCATATTGTAAGCAAAGACTATGAATGCAAACTTTGCCATAAAAGATATCCAAATCCAAGTACATTCCGTGTACATTTTCGAAGTCACACCGGAGAACGTCCATTCAAATGCCAAATTTGTGGAAAAGGTTTTGCAAGATATGCAGGAGTAATTGGGCATATGCGTATACACAGCTCTGAAAAACCGCATCAGTGTAGCATTTGTGGGCGGAGCTTTAAAGTAGCATCTAATCTTGAGCGACACAAGACGATTCATATGAAAGACATGCCGTTTTGTTGTAATTATTGCGGAAAAACTTTTAATCAGTTAAATAATCTTGAACTGCATATTCGCAGCTGCCATACAAACGAAAGACCCTATTTGTGCAGCGcatgtggcaagggatttgtaAGTTCAAACAGGCTTAATCGTCATATGTGGGTACATACGGGTTATAAACCATACAAATGCAAATATTGCACCAAAGCTTATACCAACTcaaacgatttaaaaaatcatcaaaaGAGTCACGCGGGTGGTATTTCCCCTGATGACAAACCTTTCGCATGTAGTCACTGTAACTTGCGTTTCTTTCATAAATGTCGTCTTTTAAAACATATGAAAGTTCATGACAAACGTTTTACTTGTACTGattgttttaaagtttttagttCAGAAGCGTTATTAAAGAGACATAAAGGTAAACACAAAAAGGCGGTTGTAgagaataatgaaaaaaatacaacaaattatCAAACGCTAATGTTTATGGTAGATTAA
Protein Sequence: MRKEEASTTVALNSMCRSCLSEKGHLKHIFSSSISKMIEFCMSTSVNENDKLPNQICVSCFHHIARYVKKLAEELRHSNEICSEEVAEIDNEIKNKIKRFKKINDRKGNSAETKTDSVNDVDDSPLSITQLQNDGNTLLKNNSANKTDRTDDYLKISHICNSEDASLEIAGEVVIPSDPPPLVLIPVDCTSSPSFENISKKLPNDPPPLTPLAPTLSPQSIEIEIPLQCSICSETFVTPDELKQHRINTCQSVSLHCNVCKKAFTDRKRLIGHLKGHIVSKDYECKLCHKRYPNPSTFRVHFRSHTGERPFKCQICGKGFARYAGVIGHMRIHSSEKPHQCSICGRSFKVASNLERHKTIHMKDMPFCCNYCGKTFNQLNNLELHIRSCHTNERPYLCSACGKGFVSSNRLNRHMWVHTGYKPYKCKYCTKAYTNSNDLKNHQKSHAGGISPDDKPFACSHCNLRFFHKCRLLKHMKVHDKRFTCTDCFKVFSSEALLKRHKGKHKKAVVENNEKNTTNYQTLMFMVD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -