Amal025118.1
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- mecom-b
- Assembly
- GCA_029378335.1
- Location
- CM055661.1:19362718-19368248[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0096 0.94 11.1 0.0 2 23 61 83 60 83 0.92 2 9 3.8e-05 0.0038 18.6 0.2 1 23 90 113 90 113 0.96 3 9 1.3e-05 0.0013 20.1 2.5 1 23 119 143 119 144 0.95 4 9 8.3e-06 0.00082 20.7 2.0 1 23 150 172 150 172 0.95 5 9 0.004 0.39 12.3 7.1 1 23 178 200 178 200 0.99 6 9 0.00011 0.01 17.2 0.9 2 21 208 227 207 228 0.95 7 9 7e-08 6.8e-06 27.2 0.7 3 23 571 591 569 591 0.98 8 9 1.6e-06 0.00016 23.0 1.6 1 23 597 620 597 620 0.97 9 9 3.7e-06 0.00036 21.8 3.4 1 23 626 648 626 648 0.99
Sequence Information
- Coding Sequence
- ATGGTGATCTACTGCCCGTTGGTTGTCGTAGACGTGGGAAAATTGCTCCTTTTGGCGGTTATCGGTCACGTGTCACTGACTTGGAACAACCCGATTTCCAATTGGTTTCTTCTTCCAGATTCGCAACTCAGTACGACTGGGATCGATCATGGCGAAGACAGTGAGAATGATGACGAAACGAGGTGCCCCGAATGTGATCAACCGTTTGTAGATGTTGATAAATTGGATGACCACCTAATAGCAAAGCACAGTTATCAGAGAGACGAGTTCCGTTGCGACATTTGCCCAAAAGCGTACTCGCATCGACCTGGTCTCATTCGACATAGGGCTGTTGTGCATGGTGAGACGAGGAAGTACCACTGCGAAAATTGTCCGAAGTTACAGGTGTTCAGCGATCCTAGTAATCTACAGAGGCATATAAGAACCCACCATGTGGGTGCTAGGTCTCATGCTTGTCCCGAGTGTGGAAAAACTTTTGGCACATCCTCTGGATTAAAACAACATAAACATATTCATTCCTCAGTAAAACCTTTTCAGTGCGAAGTCTGTTGTAAGGCGTACACCCAATTTTCCAATTTGTGCCGCCATAAACGCATGCATGCCGATTGCCGAATGCAGATAAAATGTGTGAAATGTGGACAGTCCTTCACTACATCAACGACTCTGTCGAAACATACTCGTTTCTGTGGTACCACTAATACGtcacaattaacaaattcaACTGGTACTCCACAGTCGCTGTCGTTAAATCCCATGGCCGGTAACAACCCCTTTTCAATGTACCGCCCTCCTGCCGCTAGTCAGTTTCCTGTATTTTCAAATCATTTTCCTCCCTATCCGCCGATATTTCCACCTACTGGACCTCCCGCGCCTTTTATATATCCCTGGTACATTGATCAACTTCGGAAGAGGAAACAGGAGGACTTAATGATTTCACAAAGGAAAATGCGAATATCAGGTTCAGAAGTCATGTCTCCCTTGAAAGATCGTTTCACTCCTCCTAGAGTGCCGTCAGTATCAGCAAAAGTTAGTCCACCAACTGCCGAAGAGGCGTCATCAAATATGGCACCTTCACCTGCAAGGCCTGCACCAACAATTGGAGTCTTCAGTAATCCCCGAAATAATTTGAGTAGGAAAACTTCTGAATCCGACACTTCTAGTGATATGCCCAAAGATTTGTCAACGACCAGAAGTCCTTCCACTGAAACAGTTAGAAGCCCTTCAAAATCAAGTGGTGGTGATGTTGTACTGGAACAGCCCTTAGATTTAAGTGTTTCAAGTAAGAAGAACCCAAAGGAGATTTCTGACGATCAAAACGATTCAAAACCGATGGCTGATGATACAGAATCTTTTCCTAGGAGTAGTTCGGAAGATGAAAAAGTAGATGCGAAAGAATATGTTCCATCTGAAACTCCCCAAAAATTTCAAGAAGATAGAACACCTCCTCATATGGCGTATCCAAAACCTATTCACCCAATGCTTTTAGATATGCCAAGGCCTAATTTTCCTTCATTATCTCTTCTCCCAAACAACGAGCGTCTGCTTCCGCCGCCGATTTATCCTCCACGATTTACAATAATGCATAATCTTCAAAACTGCCGACATTTTGACATGGTTCGTCTTGGTCTTCAAAATTATACAGATGTAAAACCATATGTGGAGGTCCTCAAACAGCAAGCACAGGGTCCAAAAACTAAAGATCGCTACGGTTGCAAATTCTGCGGTAAAGTATTTCCTCGGTCTGCGAATCTCACAAGGCATCTACGGACGCACACGGGTGAGCAACCGTATAAATGTCGATATTGTGAAAGGTCATTCAGCATATCATCGAATCTTCAACGTCATGTTAGAAATATTCATAATAAAGAGAAGCCGTTTAAGTGTCCTCTTTGTGATCGTTGTTTTGGTCAACAAACCAATTTAGATAGACATTTGAAAAAGCACGAAGCTGACGATGGTAGTGGAGGTGTTGCAGTAGCTGACTCCCCCGGAAGTAGTAACGAAACAGAAAAAGAGGATGCCTATTTTGATGAAATAAGGAATTTCATGGGAAAGGTAACTTATTCAGGTCCCAACTACAACGAGAACGAGCTATTTGTTTCCCCTTACGAGAAAATCGCAGACGATCCATTTAACAGGAAACCAGAAGAGGAGAGTAAGTCATATCCAATGATGGAATACTCGGAGGGAAAAACGAAATTAGATGTTCCACTTTTAGACGGGAAGATTAAGCAAGAGAaggaagaaatatttaataataacgatCATCCTTTAGAAGTGTCCACTTAG
- Protein Sequence
- MVIYCPLVVVDVGKLLLLAVIGHVSLTWNNPISNWFLLPDSQLSTTGIDHGEDSENDDETRCPECDQPFVDVDKLDDHLIAKHSYQRDEFRCDICPKAYSHRPGLIRHRAVVHGETRKYHCENCPKLQVFSDPSNLQRHIRTHHVGARSHACPECGKTFGTSSGLKQHKHIHSSVKPFQCEVCCKAYTQFSNLCRHKRMHADCRMQIKCVKCGQSFTTSTTLSKHTRFCGTTNTSQLTNSTGTPQSLSLNPMAGNNPFSMYRPPAASQFPVFSNHFPPYPPIFPPTGPPAPFIYPWYIDQLRKRKQEDLMISQRKMRISGSEVMSPLKDRFTPPRVPSVSAKVSPPTAEEASSNMAPSPARPAPTIGVFSNPRNNLSRKTSESDTSSDMPKDLSTTRSPSTETVRSPSKSSGGDVVLEQPLDLSVSSKKNPKEISDDQNDSKPMADDTESFPRSSSEDEKVDAKEYVPSETPQKFQEDRTPPHMAYPKPIHPMLLDMPRPNFPSLSLLPNNERLLPPPIYPPRFTIMHNLQNCRHFDMVRLGLQNYTDVKPYVEVLKQQAQGPKTKDRYGCKFCGKVFPRSANLTRHLRTHTGEQPYKCRYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSGGVAVADSPGSSNETEKEDAYFDEIRNFMGKVTYSGPNYNENELFVSPYEKIADDPFNRKPEEESKSYPMMEYSEGKTKLDVPLLDGKIKQEKEEIFNNNDHPLEVST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00031287; iTF_00030419;
- 90% Identity
- -
- 80% Identity
- -