Amal025839.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrilus mali
Gene Symbol
-
Assembly
GCA_029378335.1
Location
CM055662.1:2178209-2180402[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0048 0.47 12.0 3.8 1 23 155 178 155 178 0.97
2 16 0.003 0.29 12.7 2.9 1 23 184 206 184 206 0.97
3 16 0.016 1.6 10.4 0.1 1 23 212 235 212 235 0.90
4 16 0.0003 0.029 15.8 3.5 1 23 243 265 243 266 0.95
5 16 0.0031 0.3 12.6 1.1 1 23 273 296 273 296 0.97
6 16 0.00023 0.022 16.2 1.0 2 23 306 328 305 328 0.97
7 16 0.0043 0.42 12.2 0.1 1 19 342 360 342 363 0.92
8 16 3.8 3.7e+02 2.9 0.1 2 20 438 456 437 460 0.87
9 16 6.9e-05 0.0068 17.8 0.8 1 23 470 492 470 492 0.96
10 16 0.00079 0.077 14.5 2.8 1 23 498 520 498 520 0.95
11 16 0.0001 0.01 17.3 2.2 2 23 527 549 526 549 0.95
12 16 0.00056 0.055 15.0 0.9 1 23 557 580 557 580 0.99
13 16 0.00081 0.079 14.5 1.9 1 23 586 608 586 608 0.95
14 16 1.1e-05 0.001 20.4 1.2 1 23 614 637 614 637 0.97
15 16 3.8e-05 0.0037 18.6 3.9 1 23 651 673 651 673 0.98
16 16 6.8e-06 0.00067 21.0 1.8 1 23 679 702 679 702 0.97

Sequence Information

Coding Sequence
atgcaGTCAGTTGAAAATGTCCTATCAGAAGTTTGTTGTGCGTGTTTAACAACAAATGTTCACCTAACTAGTACCATCGACCTCGACAGTAATAATGTAGACTTCCTAACAAAGTTGAAATTCTCTATTCCAGAAGTGAAGTGGACGAAAGGATATATATGTGACTTCTGCCTGAATGCGCTTAATCAGACTTACATATTCAAAGAGCTCTGTATTAAAACAAACCAATTGCTTATACAAAAGAAGTACCAAGTATTAATTAAGGAAGAAGAATCATATTCAAATGATCGTCCTGTACAAGTAGATGATCAAAGTGAGGATGAAGACGACAATGACGCTTGTGATAATTATGACAACGATTCTAACATTAATAGTCCTTCAAGCAACTGCATGGATGAAGAATCTCAAGAAAACAATGATGACAAAAAGATTAGCGAAGTGCCACTCACGTATCCTTCTGAATATTCTTGTGAATTTTGTAGTAGGAAATATAAAGAACGCAGTTCACTATTTTCCCATAAGAAAAAGATTCACAAACCTGATAGACCATTTAATTGTGTATTCTGTAGTAAGTTATTCAAACACTTGGGAGAGCTTAAAAGGCatgaaaaaatacatcttAATGAAAGGAGTTACATGTGTGATATATGCAATAAATCATATAACACAGGTCCTGTTCTAGCAACACACAAAATAATCGTTCACACTGATCCAGAAGAATGGAGGTACATCTGTCAGCACTGTGACAAAAAGTTCCCGATTAAGTCAAGTCTGGATCAACATGTAATGAGACACCACACAAACGCCAGCAACACTTACATCTGCTACCACTGTAACGAAAAATTTGACAGCAGGGTCCTaattatagcacatataaaatcaaaacattCCAAAACTAGCCAGCAAAGATCGAAAGAGTGTCACGTTTGTAACAAAATGTACATAAATCAAGTAGTACTAGAGAACCATTTAAGGAAAGAGCACAATATTGGAAGCACAGTATTAACAAAAAGGCCCAAACAATTCCCTTGTGAGAAATGCGGGAAAAAATACACAACCGTATATGTTTTAAACATACATTCTCAAGCATGTGATGGAATAAAGAGGCACAGTAAGACAAAAGAGCAAAAAGAAGGGGCCACAAAGTCTGACTGTGATAATTCCCATGATGATGATGAAAACACTGAAGACTCGAAGCAATCGAATGAAGAGAGCAAcgcaaaaaataaagaaattaaaaacgaaactCCCGAAATCGAAGATAAAGTATTAACGCAACAACAACCGAAAAAGCAACGTCAACTTTATCTCACGTGCGAATTCTGCAACCAAGTCATCGGTACGTATAAGAAATTGGTGGCCCATGCGGTAGAAAAGCACGACGCGGATCCAAAAACCATCAAACCTTACATTTGTAACGAGTGCGACGCCAGGTTTACATCGTCAATGAATCTTGCCAAGCACAAAACATATCATACTGGAAACCGAGGTCATATATGCAGTTTCTGCGGCAAAggttttaaaaccaaaaaggaCATGCTAACCCACGAAAAGCTCCACTCGAATAAGCGCGAAGTCCAGTGCGAAATCTGTTCAAAACGATTCCACACAAAGTCCTATTTACGTTCCCATAAACTTGTGGTGCATACTGACCCCATACACTGGAAGTACGTTTGCCCACACTGTCCCATGCGACGATTCCCCATGAAATCGAACTACGATGCACATATCCGAAGACACACGGGGGAAAAACCTTTCGCATGTCATCTTTGCGAGAAGCGATTTTCGGATAAGATAGTACTTCAAAAGCACTTCCAAGCCCACTCGAATATTCGTGCGCACAAATGCGATAGCTGCGGGAAAGCGTATAAAAATCGGGACGCATTGAATATTCATTTGAAGAAGGTTCACGATATCGGAAATGCGAAAATTCCTAcggttgttaaaaaatttgtttgcgACTTTTGTCTGAAAACTTTCGCCTCCAGGGATAAGTTGAGAAGGCATATGTGCTCACATACCGGAGAAAGACCATTTTCTTGTGAAATTTGCCAAAAAAAATTCACAGACAAATCTTACGTTAAGCAACATTTAAAGTCTGTTCATAATATCTATCAAAATAATCAAGATTATGTGTAG
Protein Sequence
MQSVENVLSEVCCACLTTNVHLTSTIDLDSNNVDFLTKLKFSIPEVKWTKGYICDFCLNALNQTYIFKELCIKTNQLLIQKKYQVLIKEEESYSNDRPVQVDDQSEDEDDNDACDNYDNDSNINSPSSNCMDEESQENNDDKKISEVPLTYPSEYSCEFCSRKYKERSSLFSHKKKIHKPDRPFNCVFCSKLFKHLGELKRHEKIHLNERSYMCDICNKSYNTGPVLATHKIIVHTDPEEWRYICQHCDKKFPIKSSLDQHVMRHHTNASNTYICYHCNEKFDSRVLIIAHIKSKHSKTSQQRSKECHVCNKMYINQVVLENHLRKEHNIGSTVLTKRPKQFPCEKCGKKYTTVYVLNIHSQACDGIKRHSKTKEQKEGATKSDCDNSHDDDENTEDSKQSNEESNAKNKEIKNETPEIEDKVLTQQQPKKQRQLYLTCEFCNQVIGTYKKLVAHAVEKHDADPKTIKPYICNECDARFTSSMNLAKHKTYHTGNRGHICSFCGKGFKTKKDMLTHEKLHSNKREVQCEICSKRFHTKSYLRSHKLVVHTDPIHWKYVCPHCPMRRFPMKSNYDAHIRRHTGEKPFACHLCEKRFSDKIVLQKHFQAHSNIRAHKCDSCGKAYKNRDALNIHLKKVHDIGNAKIPTVVKKFVCDFCLKTFASRDKLRRHMCSHTGERPFSCEICQKKFTDKSYVKQHLKSVHNIYQNNQDYV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00030410;
90% Identity
iTF_00030410;
80% Identity
-