Amal016897.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrilus mali
Gene Symbol
-
Assembly
GCA_029378335.1
Location
CM055659.1:699579-702587[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00087 0.086 14.4 0.2 1 23 296 318 296 318 0.95
2 12 1.2e-05 0.0012 20.2 1.5 1 23 326 348 326 348 0.99
3 12 3.1e-06 0.00031 22.1 0.2 2 23 356 377 355 377 0.97
4 12 1.1e-05 0.0011 20.3 1.0 1 23 383 405 383 405 0.98
5 12 5e-05 0.0049 18.3 2.8 1 23 412 434 412 434 0.99
6 12 3.2e-05 0.0031 18.9 0.7 1 23 440 462 440 462 0.95
7 12 1.8e-05 0.0018 19.6 0.1 1 23 468 490 468 490 0.98
8 12 1.1e-06 0.00011 23.5 1.2 1 23 496 519 496 519 0.96
9 12 4.2e-05 0.0041 18.5 1.0 1 23 525 548 525 548 0.95
10 12 2.9e-06 0.00028 22.2 2.2 1 23 554 576 554 576 0.99
11 12 0.00017 0.016 16.6 0.4 1 23 582 604 582 604 0.94
12 12 0.0022 0.22 13.1 0.1 1 23 610 634 610 634 0.92

Sequence Information

Coding Sequence
ATGTCTGTTTTATTTACTGTGAAAGAAAATCCGCACTGTCTAGTGTGCAGTTCGAGGGTAGGATATTCTTCACGAAATTCAGTTCAAATATTCAACAAAGatAGCGTAACGTGTAGGGAACGCCCCCTCAGGGACGTTATATCACACGTTTTGAAGGAGGATATACAAGAAGATACAGTTCATtcattattaatatgtaaaaaatgcTTTAAACTTATTGATGAATTAGAAGAACTGGAACAGAGATTGGAGGATATAAAGTCTGatttaatagataattataAGAAATCGTTACTGAAAACCAAATGTGAAGAGGACATTTCTGATAAAGAAGCAAAGGAGTCAATGCACACACCTGAGACTATATTAGAAATTCCTTCTGATGAAGATACACAGGGGGCAGTGGAAAAAATAGACAATTTGACAGATATTGAAATGGAACTAGAGAAAATGCACGAGGAGGAttcaaatgataaaaatattatatcacaaaataaaaatttccataACTATCAGAGTATAAACATTGTTAATTCTGGTAATATGAATAGTTCAGAATCAGACCCAGAAGCAGGTGAAAGtccaaacaatttaataattattaatactgAAAAAACTTCAGGAAAAAAGGCAGGCAATGCTCAAATTAAAGTGGAACTTGATACAGAGGAAGCTAGTGAAAAACCATTAATACTGAAAAAGCGGGATATTTCAAACAATGTTGACAAAatctttcttaaaaaaatcaaagaagAGGCCCCAGTTCCAgtCGTCTCTCGAGAAGGGGATCTGTACACATGTCTGTTATGTGATGGTGATCAAACTGTTTGTGGTGCTGCTAAAGCCATAATACAGCATGTAAGAAGTATTCACGATGCTCGTCTTTATATATGCGACGTTTGTGGCCAGGACTTCAGAAAACGTAACGAACTGTCTCTTCATTTGGACGAGCACGTTGCTACCGAAGAAGGCGATTTTCAGTGTGAAATTTGTAACAGAATTTTTAGCAACTTACGCTTATTTAGAATTCACAGGCGCATGCATTACCCACAGAACAAAGCATGGACCTGCGACGTTTGCGGAAAGAGATACAGTTCGAAAAATCTTCTTGAAGAGCACATTAATACACACACAGGAAACAGGCCCTACATTTGTTCGCTTTGTGGTAAAGATTTTGCTTCAAAGTATACTTTTAAAGCACATGAGAAGACTCATGAAGTGAGACCTCGGCCGTTCCAATGTCAACAGTGTAACAAGTCCTTTTTGAGTCAACAGAATCTGACCCAGCATGAGCGCACTCATTCTGGTGTTAAAGAATTTGCTTGCCACATTTGCGGTAAACAGTTTGGCTCAGCTCACAACCTGGAGGTGCATTCGATCGTGCACACTGGGTACAAGCCATTCGTGTGCGGTCTTTGTGGGAAAGCGTTTGCTAGAAAGGCTGAAATACGGGACCACGAACGCACCCACACTGGAGAGCGTCCGTACCAATGCGAATTTTGTGGGGCCACGTTTAGCCAACGATCAAATTTACAGTCGCACAAAAGAGCCACTCATTACGATGACAAACGATATAAATGTCAAGAATGTGGAAAAGGCTTTAAAAGGAGAcgttTGTTGGATTATCACACGAAAGCGGCGCACACAGGCGAGCGTCCGTTCAAGTGCAACGTTTGCGGCGCGACTTTCGTGTACCCGgaacattttaagaaacatagGCGCATTCATACGGGGGAGAAGCCATTTTTATGCGAAGTGTGCGGTAAAGCATTCAACAGTCGCGACAACCGCAATGCTCATCGGTTCGTGCATTCAGATAAGAAGCCGTACGAATGTTTGGTGTGCGGCGCGGGATTTATGCGAAAACCTCTACTCTATCAGCACATGCAGTCGCAGGGTCATTTGAACGACACTATTGTTGTCAACCAGCCAAGACTTACCACTGATGACGATCAAATTATCACGGTGAATGCTGATGGTGAAATGGAAATTGTGGATAGTGAACATATCAGCAGCCTGCAAGCTTTGGAAGGAATTGAAGAAGAAGGAAATGAAGATACGAAACTGTTTATCACTGAACATGTCTTAATAGAAGGTGGTGATGTTTTTGGTAACTCCAAAGGTACTCTAGTAGTAAGTGACCAGGTTGATGAAGAAAATATGGAAGACTCGGAGACTGTTGAACATATAATTATAGATGGACAGCAAATTCAATTCACCAATGATGGTGACGAAGACGAGACAGGTGATGGAGAAGACAACTCAGATGGCCAACAAGTGTTAGGCGCCGACGAGTATGAGGAAATAACAGAAGATATGTTTAGTAGCAGTCGCAGTCAAATAATTCAAACTGCAAATGGCCCTGTTCAGTTAGTGAAGGTTCGTATTCCCAACGAAAGTggtgaagaagaagaagcttGGATTAAAATAGTACAGTAA
Protein Sequence
MSVLFTVKENPHCLVCSSRVGYSSRNSVQIFNKDSVTCRERPLRDVISHVLKEDIQEDTVHSLLICKKCFKLIDELEELEQRLEDIKSDLIDNYKKSLLKTKCEEDISDKEAKESMHTPETILEIPSDEDTQGAVEKIDNLTDIEMELEKMHEEDSNDKNIISQNKNFHNYQSINIVNSGNMNSSESDPEAGESPNNLIIINTEKTSGKKAGNAQIKVELDTEEASEKPLILKKRDISNNVDKIFLKKIKEEAPVPVVSREGDLYTCLLCDGDQTVCGAAKAIIQHVRSIHDARLYICDVCGQDFRKRNELSLHLDEHVATEEGDFQCEICNRIFSNLRLFRIHRRMHYPQNKAWTCDVCGKRYSSKNLLEEHINTHTGNRPYICSLCGKDFASKYTFKAHEKTHEVRPRPFQCQQCNKSFLSQQNLTQHERTHSGVKEFACHICGKQFGSAHNLEVHSIVHTGYKPFVCGLCGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCQECGKGFKRRRLLDYHTKAAHTGERPFKCNVCGATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQSQGHLNDTIVVNQPRLTTDDDQIITVNADGEMEIVDSEHISSLQALEGIEEEGNEDTKLFITEHVLIEGGDVFGNSKGTLVVSDQVDEENMEDSETVEHIIIDGQQIQFTNDGDEDETGDGEDNSDGQQVLGADEYEEITEDMFSSSRSQIIQTANGPVQLVKVRIPNESGEEEEAWIKIVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00030401;
90% Identity
iTF_00030401;
80% Identity
-