Amal029355.1
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- -
- Assembly
- GCA_029378335.1
- Location
- CM055663.1:3526762-3528072[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.7e-05 0.0085 17.5 1.5 1 23 10 32 10 32 0.99 2 13 9.9e-07 9.7e-05 23.6 1.5 1 23 38 60 38 60 0.99 3 13 1.7e-06 0.00017 22.9 4.8 1 23 66 88 66 88 0.98 4 13 3.3e-06 0.00032 22.0 0.7 1 23 94 116 94 116 0.98 5 13 1.6e-07 1.6e-05 26.1 1.3 1 23 122 144 122 144 0.99 6 13 3.9e-07 3.8e-05 24.9 4.3 1 23 150 172 150 172 0.98 7 13 1.5e-05 0.0015 19.9 4.1 1 23 178 200 178 200 0.99 8 13 6.5e-06 0.00064 21.1 2.4 1 23 206 228 206 228 0.99 9 13 1.6e-05 0.0016 19.8 3.0 1 23 234 256 234 256 0.99 10 13 1.4e-06 0.00014 23.2 5.4 1 23 262 284 262 284 0.99 11 13 0.00063 0.062 14.8 4.9 1 23 290 312 290 312 0.98 12 13 5.5e-05 0.0054 18.1 1.5 1 23 318 340 318 340 0.98 13 13 0.00088 0.086 14.3 0.2 1 22 346 367 346 370 0.92
Sequence Information
- Coding Sequence
- atggaaaccaatttgggtaaaaaactttttaaatgcgAATTCTGCCAAAAAAGCTTCCCAGAGAAAAAGAACATCGATTCTCACATGAAAATCCATTTGGAGCAAAAGCCTTTCAAATGCGATATTTGCGAAAAAAGCTTCAAACGAAGAGGAGAGATAAAAAGTCACATGACAACTCACCTGGGGGAGAAATCGTTCAAATGCAATATCTGCGAGAAAAGCTTTTCTCGAAAAAATTGCTTGACCACACACCTCAAAATCCATCTGGGTGAAAAACCATTTGAATGCGAAATCTGCAAAAAACGCTTCATTGATAAAAGAAATATCGATGCTCACATGAAAACCCATTTGGGGGACAAACCGTTCAAATGTAGCATTTGCAATAAAAGCTTCATCCGAAACGGTCAGCTAAAAGGTCACATGACAACCCACTTGGTCGAAAATCAGCACGAATGCAGGATCTGCCAAAAAAGGTTTTCGTTTAAGAGTAATTTAAATCGTCACATGATAACCCATTTGAACGAAAAGGCGTTTAAGTGCGAATCCTGCAACAAAAGCTTCACCCAGGAGAAGACTCTGCATCTACACATGAAAATCCATTTAGACGATAGACCCTTCAAATGCGAAGTCTGCAAAAAAGGCTTTATCCAGAAGAAGGATTTATATAACCACACAAAAACCCACTCAAatgaaaaaccttttaaatgcGACGTCTGTAGCAAATGTTTCACTTTGAAAAACGGTTTGCTTCAACATATGAAAATCCACTCAAACGAAAAACCATTCAAATGCGAATTTTGCGACAAATCCTTCtttcataaaaacaatttgaatCAACACATGAAAATCCATTCAGACGAAAAGCCGTTCGAATGCAAAATCTGCAAAAGATGCTTTGCTAGGAAGAGAGGGTTGTATTTCCATATGCAAACTCATTCGGACGAGAAACCGTTCAAATGTGAAGCTTGTGAAAAATACTTCACTCAGAAGAATGGTCTATATCAACACATGAAAATTCATTCAGGTGAAAAACCGTACGAATGCAAAACCTGCAAAGCAGGCTTTGTACGAAAGAGGGATTTAGATGTTCATATAAAGGCTAATTTGCACAACAAGCCGcctctaaaagaaaaaattgttgaacCTACTGTAAAATTTGAAGAAGAATGTGAAAAAGAATCTGTGGAAATAAGGGAAATTGTCGTTACAAAGAAAGAACCTAAGGGAGAGCCCTTTGAAGTTGCCGAAATCTCTGCTGAAACTGAAGCCCCTGAGGTCCTTAGCATTAAAATGGAATCACCAGAGTTCTAA
- Protein Sequence
- METNLGKKLFKCEFCQKSFPEKKNIDSHMKIHLEQKPFKCDICEKSFKRRGEIKSHMTTHLGEKSFKCNICEKSFSRKNCLTTHLKIHLGEKPFECEICKKRFIDKRNIDAHMKTHLGDKPFKCSICNKSFIRNGQLKGHMTTHLVENQHECRICQKRFSFKSNLNRHMITHLNEKAFKCESCNKSFTQEKTLHLHMKIHLDDRPFKCEVCKKGFIQKKDLYNHTKTHSNEKPFKCDVCSKCFTLKNGLLQHMKIHSNEKPFKCEFCDKSFFHKNNLNQHMKIHSDEKPFECKICKRCFARKRGLYFHMQTHSDEKPFKCEACEKYFTQKNGLYQHMKIHSGEKPYECKTCKAGFVRKRDLDVHIKANLHNKPPLKEKIVEPTVKFEEECEKESVEIREIVVTKKEPKGEPFEVAEISAETEAPEVLSIKMESPEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -