Amal001285.1
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- -
- Assembly
- GCA_029378335.1
- Location
- CM055654.1:15502903-15507730[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0028 0.27 12.8 6.8 2 23 164 185 163 185 0.96 2 15 7.8e-07 7.6e-05 23.9 2.4 1 23 190 212 190 212 0.98 3 15 7.3e-05 0.0071 17.8 5.3 1 23 218 240 218 240 0.97 4 15 0.0013 0.13 13.8 0.2 1 19 246 264 246 267 0.94 5 15 1.9e-05 0.0019 19.6 0.3 1 23 274 296 274 296 0.97 6 15 3.6e-06 0.00035 21.9 4.2 2 23 529 550 529 550 0.97 7 15 5.9e-06 0.00058 21.2 5.2 1 23 556 578 556 578 0.98 8 15 0.00037 0.036 15.5 7.7 1 23 584 607 584 607 0.96 9 15 0.0008 0.079 14.5 1.1 1 23 619 641 619 641 0.97 10 15 5.3e-06 0.00051 21.3 4.1 1 23 647 669 647 669 0.97 11 15 2.6e-06 0.00025 22.3 0.5 1 23 676 698 676 698 0.96 12 15 1.6e-05 0.0016 19.8 1.3 1 23 704 726 704 726 0.98 13 15 4.8e-07 4.7e-05 24.6 0.9 3 23 734 754 732 754 0.96 14 15 7.2e-06 0.0007 20.9 0.1 1 23 760 782 760 782 0.99 15 15 0.21 20 6.9 1.8 1 23 787 810 787 810 0.96
Sequence Information
- Coding Sequence
- ATGGAAAATGTACCTTCAGAATTGTCTAGACTTTGTCGTGCTTGTAAAAATGAATCCAAACATATGTTATCATTGTTTGAATCTCTAGAAAACATGGAGCCCAGTCCCCGGATTGACGAGATGCTAATGGCTTGCACTTCAATTCAAGTTCGTTTGGGAGATGGTTTACCTACAGTTATTTGTTCACCCTGTACAGATCTTCTGAGGGCAtcatatttattcaaaaaaaaatgtgaagatACAGATAATGAGTTAAGAGAgcatattaaacaaattagaaaagatGATGACATTAAACCAAGTACTTCCCAATCTACGTCTGAAGTGACAAGTAATTTATTAGAAGATATCAACAATGTTATGGTTAATAATGTGTCAGATTCTTCATTACATTCATCTAATGTACAACCAAGCCTTCAATCGGAAATCAAATGTGATGCTGAAAACAAAGATTTTATAGAAATTCTAGATAATTGTCAAATTCTTCTTACTTGCCGTACTTGTCATAAAAGTTTTACTACATGTGAGGGGCTTAGGAGTCATAAAAGGTTGCACACTGGTGAATTATTTCAGTGTAAAATATGCCCAAAAGTGTACACTCGCCCAACTCATTTACAAAGACATGAAACAACACATAAAAGGCATAAAGTTCATATTTGTAAAATCtgcaataaaactttaaagagATATGAACATTTAAAACGCCATCTGATTACACATATTAAAGAAAAGCCCTTTGCATGTAAAAGTTGTAATCGTGGTTTTAGCAGGGCAGAACACTTAGCAAATCATGCAGTTCGTTGTAAAGGAGATAAAGTGTATATTTGTGACATTTGCAATAAAGGATTTAATCGTGAAGATAGTTTAGAAGTTCATAAAAAACTACATGAAAATAAACAGCCAGTTTTACCTACTTTAGAAGATTTGAATAATGTGGAGGACCATTATTTTGAGATTGATTTTGAAGATAGTTCAATGCTTCAAGATTTTGCTGATGATGGAGAtggtgatgatgatgatgatgacaaAAGAGAGTGTTTTGAACCACAAGTTAGTATTACAGAAAACACTGATCAGCAGATTGATTTGTATTCAAACAAAATGGAAGATGAAGGTGCTACAATACAaaacgataaaaaaagaacttaTGATACAGATGGGGTAATTCCTGATGATATTGATAATCaatatgataataattttggtaATGTACATCAAAGTGATGACGATCTTAATGTGGAAATAGCTAGAGAGAACAGTGtggaaataataacaaaagaagAACGAGtatatgatgatgatgatgatggcaACTTTATAGATAGCAAGGCTGAAGTAGAAAACTTAACTATACAAGACAAGACCCATATATACCCCGAACATGATATTGCAGATGATGAATATGTTGCTGAAGAATCAGACAGTGCTGATTCTGAATATCGACCCATGAAAACAGTAAGGCGAACAAAAGGTAAAAGAGGCAGACCTAAAAAATACTCTAAGTCCCCTAAAGCAACTGGAAGACCAAGAGGCAGACCATTGGGATctgtaaaagcaaaaaaagttatagatgATGAAAAGGCATCATGTAAGGAATGTGGTAAAAAGTTTGTTAGACATACAAATTTGAAACGACATCTTATGTCTCATTCAGAAATAAAGCCATATCAATGTGAAAAATGCTCTAAAAGATTTAACCGACGTGATCATTTGTCCACTCATATGAAATTACATttcaggaaaaataaattccagtgTGAAATTTGTAAATGCTCATTTAGTAGGGAGGATCATCTTACTAAACATCATGTAACCAAACATAACATTGGAAACATGGTAATTTCAGAGAAGAAATTCAAATGTGAAATTTGCCAAAAAGGATTTACAACAGAAAAATATCGTGATATTCATATGAAAGGACATATGGGTGAAAACACTTACATATGCAAGACATGCGAGAAGACTTTTATTTCTAAGTCACATTTAACAGAACATATGAAGTTCCACAATGATCATTGCAAGAAATTCTTATGTTCAGAATGTGGTCAGCGATTTATTAGAAACGATTACCTTGTTATTCATATGAGACGACATAGGGGAGAAAAGCCTTTCAAATgcaaattttgtggaaaaggatTTCCTCGCACCACAGATCTAACTGTACACGAAAGGTATCACACAGGTGAAAAGACGCATTTGTGTACAATTTGTGGACGGGGATTTGGAAGAGCGTATAATCTAACGGTACACATGAGAACGCATACAGGAGAAAAACCTTATCAATGCACATATTGTGATGCAGCTTTTGCACAAGGAAATGACTTGAAAGCACACATTCGACGACATACTGGTGAAAGGTTCCACTGCGATCTATGTAATGAAAGTTTCTTAATGGGATACTTATTAACACAACACAAAAGAACAGTTCATGgaCTGAATGTTGTAAGTAATATCCGAAGACTTAAGCCAATACATAAAATAGAGAAAATAGATGAAAATAACTCAGATGATCCACCTCCCGTAACTATCAAACTGCCAGCCCCTGTTGTTCCAGTTAATGTTCTTCAAGCTCAGTTAGCTATGGCTCAGCTGCAAAATCAAATGGGTGAATCCtgtgaattaaaatttgaagctACATAA
- Protein Sequence
- MENVPSELSRLCRACKNESKHMLSLFESLENMEPSPRIDEMLMACTSIQVRLGDGLPTVICSPCTDLLRASYLFKKKCEDTDNELREHIKQIRKDDDIKPSTSQSTSEVTSNLLEDINNVMVNNVSDSSLHSSNVQPSLQSEIKCDAENKDFIEILDNCQILLTCRTCHKSFTTCEGLRSHKRLHTGELFQCKICPKVYTRPTHLQRHETTHKRHKVHICKICNKTLKRYEHLKRHLITHIKEKPFACKSCNRGFSRAEHLANHAVRCKGDKVYICDICNKGFNREDSLEVHKKLHENKQPVLPTLEDLNNVEDHYFEIDFEDSSMLQDFADDGDGDDDDDDKRECFEPQVSITENTDQQIDLYSNKMEDEGATIQNDKKRTYDTDGVIPDDIDNQYDNNFGNVHQSDDDLNVEIARENSVEIITKEERVYDDDDDGNFIDSKAEVENLTIQDKTHIYPEHDIADDEYVAEESDSADSEYRPMKTVRRTKGKRGRPKKYSKSPKATGRPRGRPLGSVKAKKVIDDEKASCKECGKKFVRHTNLKRHLMSHSEIKPYQCEKCSKRFNRRDHLSTHMKLHFRKNKFQCEICKCSFSREDHLTKHHVTKHNIGNMVISEKKFKCEICQKGFTTEKYRDIHMKGHMGENTYICKTCEKTFISKSHLTEHMKFHNDHCKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKFCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHIRRHTGERFHCDLCNESFLMGYLLTQHKRTVHGLNVVSNIRRLKPIHKIEKIDENNSDDPPPVTIKLPAPVVPVNVLQAQLAMAQLQNQMGESCELKFEAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00031282;
- 90% Identity
- -
- 80% Identity
- -