Amal029108.1
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- -
- Assembly
- GCA_029378335.1
- Location
- CM055663.1:1730068-1733634[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00048 0.047 15.2 2.5 2 21 35 54 34 55 0.93 2 23 0.0025 0.24 12.9 2.0 3 23 63 83 62 83 0.98 3 23 0.00011 0.011 17.2 2.6 1 23 89 111 89 111 0.98 4 23 1.4e-05 0.0014 20.0 2.3 1 23 117 139 117 139 0.97 5 23 1.9e-05 0.0019 19.6 1.3 1 23 145 167 145 167 0.98 6 23 1.4e-05 0.0014 20.0 3.2 1 23 173 195 173 195 0.97 7 23 2.7e-05 0.0027 19.1 2.7 1 23 201 223 201 223 0.96 8 23 1.2e-06 0.00012 23.3 2.2 1 23 229 252 229 252 0.97 9 23 0.00039 0.038 15.5 1.7 2 23 261 282 261 282 0.98 10 23 0.051 5 8.8 1.4 1 23 323 345 323 345 0.98 11 23 0.23 22 6.8 2.7 1 21 348 368 348 369 0.95 12 23 1.4 1.4e+02 4.3 1.9 2 21 509 528 508 529 0.93 13 23 0.0013 0.13 13.8 1.3 2 23 536 557 535 557 0.91 14 23 0.0098 0.96 11.0 0.6 2 23 564 584 563 584 0.93 15 23 1.2e-06 0.00012 23.3 1.9 1 23 590 612 590 612 0.98 16 23 0.00061 0.06 14.8 3.5 1 23 618 640 618 640 0.98 17 23 1e-06 0.0001 23.6 0.2 2 23 646 667 645 667 0.97 18 23 5.9e-06 0.00058 21.2 4.4 1 23 673 695 673 695 0.99 19 23 0.00035 0.034 15.6 3.5 1 21 701 721 701 724 0.95 20 23 0.0087 0.85 11.2 5.0 2 23 733 754 733 754 0.98 21 23 0.02 1.9 10.1 2.2 1 23 793 815 793 815 0.98 22 23 2 1.9e+02 3.8 3.0 1 15 818 832 818 839 0.84 23 23 0.00066 0.064 14.7 1.4 1 23 895 917 895 917 0.98
Sequence Information
- Coding Sequence
- atgtcCAACACCACGAAAGACACGACTTCTTCATCGTATCAGTCGGCCTTCGAGAAAGCCATCGGCATTTTGAACCCGATAGCGACCAAAACGATCGAAATTGAGTGCGAACTATGCGAGAGGATCTTCACCCAGAACAGCCACTTCAAACGTCACCTCTGCAACCAAAAACCTCGACCGGTTGCGTGCGAAGTTTGCCATAAAAAGTTCTTGTCCAAATCTCGTCTGGAGCGACACTGGCGTGTCCATTCCGGGGAGAGACCTTTCGAATGCCACATTTGCAAAAAGCGATTTCCCTACAAAAATTACATGGCAAGACACCTTCTAATCCACTCGGACGATAAACCGTTCAAGTGCAACGTTTGCGACAAATCTTACGTGCAGCTTTATAAACTCAAACAACATATGTACAACCACACTGGGGAGAAACCGCACAAATGCGAATATTGCGGGAAAGACTTTACGGCGCTGTGGAATTTGAAGGTGCACCTCACTACTCATGAAAGCTCGAAGAGCCATGAGTGCGTCCACTGCCCAAAAGTTTGCTCCACAAAGTATAATCTAATGGCCCACATGGCTATTCACAAAGATGACAAACCGTTTAAGTGTGAGACCTGTGGGAAATGTTTCGTCTTAAAGAGTTCCCTAGAAAAACACTCTAACGCCCATTTGAGGAAAAAATCGTTCAAATGTGACCAATGTCCAAAATCGTTTTCGCGAAAGGACTACCTATTCGTCCATATCAAATATACCCACAATAATCAGTCGAGGATTTTCGAAAAATGTCAAGTTTGCGGCAAACAATTTATGTTCAAGTCCCGTCTAGGAAAGCACATGAAAGTGCACACAAGACGCGAGTGTGTGTTTTGTTGCAGATCTACTGAGGAATGCGTTTGTTCCAAAAATCAAGAAGGGGATGACCCAATGAATTCCTTAAAGGATCCTTTGACCAGGGACTATTTCATGTTCAAGTGCCAGACGTGTTTCCGGATTATTTTACGTCAATCTCAACttaaaattcacttaaaaataCATCGCGATTACAAGTGTGTTGTTTGCGACGAGGATTATAGAAGGTGTCGTTGTTTTGATAACCACATGGAGGTTTCCAGAAGCAAAAACACTTACAAAAAAAGTACCAATATTagcagtagtagtagtagacaATCTTCAGCAAACTCTGATGAAACTGTTGGACCTGTTGATActgttaaagttaaaaaagagGGAGAAGTTGATGGTGAATCTCTTGAGAAAAAGACAATTGAATTGTTAAGTGAAATTGTTGATCTTAAAGAAGAACCCAAGGAAGAGTATGTTGAATTTAACCACCAAAAAGCCTTTGCAGATTTTACCACTGAATTTCATGAAGACGTTAAGGCATTGGACGTTAAAGAAGACGTGCCCAAtaagaaaatggaaaaaatgtCCAAAGAAAATAACGACTTGTCGTTCCAGTGTGCTTTCGAGAAGGCCCTGCAGGTTATGACAGCCACCGATTCCAACGACCTCAAGGGTAGAATCGAATGTGAGGTTTGCAAGGGGATTTTCTTTATGCAGCATCACTTCGAAAGTCACATTTGTAGCGAGAACACTAAACAAATATCGTGCCCCGTCTGTCAAAAGACTTTCACGTCCAGGTTTCGCCTGAGGCAACATTCGTATCTTCATTCGGGAGAGAAACCAGTCGAGTGTAATATTTGCAAGAAACGTTTTAGTCGCACGTACATCGCCAAACACCTTCAGATACACACAGAGAAGAAACGTTTCACGTGCAAAATATGCGACAAGTCCTACAGGTATTCTGACACCCTCAAGGCACACATGTACAGCCACACGGGAGAGAAACCacacaaatgtaaatattgtgGGAGGCAATTTCGTGTGAAGTCAATATTGAGGGTGCACTTAACCACTCACGAGGAAAAGACTAACAAATGTCCCCTATGTCCAAGGGTGTTCTCAACAAAGTATTATTTAAAGGTCCACATGGCTGTgcacgaaaacaaaaaaccttTCAAATGCGAGACCTGCGGGAAGTGCTTCGTTTTGAGGATCACCCTGAAGAAACACATGAAAACCCATTCAGGCAAGAAACCTTTCAAATGTAACCATTGCCTCAAGGCGTTTACCCGTAAAGAAACCCTCGCAATCCACATCAAATGCATCCACTTAAGAGACACGACAGGTCTTGAAAAATGTCACGTATGCGACAAACATTTCTTGTACAAGTCTCGATTAGCGCAACACATGAAGATCCACACAAAATTTGACTGTTTATTCTGCGTACGATCGGCCGATGAGTGCATTTGTTCGGAAAGTCCCGAAAAATACGGGGATTCCCTGAAGAAGCCTTTCGCCAGAGACAATTTCATGTTCAAGTGCCAGACGTGTTCCCGAATTATTTTGCGCCAATCCCAACTGAAGATGCACCTTCGGAAACACCGCGATTACAAGTGTGTCGTATGCGACAAGGATTACAAGAATTGCAGTTGTTCGGACAATCACATAGAGGTTTCCAAGACTAATATTATTACTTATCAGAAAAGTAGTAATGGTAACAGTAGTAAAACTTCGACAAAGGTTGATGAACAGCAGTCGGCAACAAATTCAAGtgttaaaaaagattttggtGAAGACCCAATGAAAAGCGTCGTTGCCAGAGCCAGAGACGAGTTTATGTTCAAATGCCAGACGTGTTCCAGGATCGTCTTGCGCCAGTCCCAGTTGAGGAATCACATGCGGATACATCGCGATTATACGTGTATAGTTTGTAATCAGGATTACAGGAACTGCAGTTGCTCTGACGATTATATGGAAGTTTCGAAAAGCGCGATCACTTACAATAAGAAGAAGACCAACAACAATACAAAATCTAATGCAGAAAAAGAATTAGAATTAGCAGTTGAATGTGATGTTGAAGTTAAGAAGGAAATTATTTCTCTTTCTGGTGTACAAGACGAGAAGAAATCAATCGACTTGATGAGTGAAGTTATTATTCCTAAAGAAGAAGTTAAGATAGAAATTGGTGAAGTCGATAAAAGTACCACCATTAACATTTATAAGAAGAAGACCTCTGGTGTTAAGGAGGAATCCATAGAGCGGTTGTAA
- Protein Sequence
- MSNTTKDTTSSSYQSAFEKAIGILNPIATKTIEIECELCERIFTQNSHFKRHLCNQKPRPVACEVCHKKFLSKSRLERHWRVHSGERPFECHICKKRFPYKNYMARHLLIHSDDKPFKCNVCDKSYVQLYKLKQHMYNHTGEKPHKCEYCGKDFTALWNLKVHLTTHESSKSHECVHCPKVCSTKYNLMAHMAIHKDDKPFKCETCGKCFVLKSSLEKHSNAHLRKKSFKCDQCPKSFSRKDYLFVHIKYTHNNQSRIFEKCQVCGKQFMFKSRLGKHMKVHTRRECVFCCRSTEECVCSKNQEGDDPMNSLKDPLTRDYFMFKCQTCFRIILRQSQLKIHLKIHRDYKCVVCDEDYRRCRCFDNHMEVSRSKNTYKKSTNISSSSSRQSSANSDETVGPVDTVKVKKEGEVDGESLEKKTIELLSEIVDLKEEPKEEYVEFNHQKAFADFTTEFHEDVKALDVKEDVPNKKMEKMSKENNDLSFQCAFEKALQVMTATDSNDLKGRIECEVCKGIFFMQHHFESHICSENTKQISCPVCQKTFTSRFRLRQHSYLHSGEKPVECNICKKRFSRTYIAKHLQIHTEKKRFTCKICDKSYRYSDTLKAHMYSHTGEKPHKCKYCGRQFRVKSILRVHLTTHEEKTNKCPLCPRVFSTKYYLKVHMAVHENKKPFKCETCGKCFVLRITLKKHMKTHSGKKPFKCNHCLKAFTRKETLAIHIKCIHLRDTTGLEKCHVCDKHFLYKSRLAQHMKIHTKFDCLFCVRSADECICSESPEKYGDSLKKPFARDNFMFKCQTCSRIILRQSQLKMHLRKHRDYKCVVCDKDYKNCSCSDNHIEVSKTNIITYQKSSNGNSSKTSTKVDEQQSATNSSVKKDFGEDPMKSVVARARDEFMFKCQTCSRIVLRQSQLRNHMRIHRDYTCIVCNQDYRNCSCSDDYMEVSKSAITYNKKKTNNNTKSNAEKELELAVECDVEVKKEIISLSGVQDEKKSIDLMSEVIIPKEEVKIEIGEVDKSTTINIYKKKTSGVKEESIERL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -