Amal002887.1
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- -
- Assembly
- GCA_029378335.1
- Location
- CM055654.1:30307005-30311981[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00059 0.058 14.9 3.4 2 23 143 164 142 164 0.97 2 19 3.7e-05 0.0036 18.7 1.1 1 23 170 192 170 192 0.97 3 19 6.5e-06 0.00064 21.0 3.0 1 23 198 220 198 220 0.97 4 19 3.1e-06 0.0003 22.1 0.7 1 23 226 248 226 248 0.96 5 19 0.00088 0.086 14.3 0.3 3 20 256 273 255 276 0.93 6 19 4.5e-07 4.4e-05 24.7 1.8 1 23 282 304 282 304 0.98 7 19 0.015 1.5 10.4 4.1 1 23 310 332 310 332 0.99 8 19 6.3e-07 6.2e-05 24.2 0.1 1 23 338 360 338 360 0.98 9 19 2e-05 0.0019 19.5 0.6 1 21 366 386 366 387 0.94 10 19 0.00019 0.018 16.5 0.5 2 23 523 544 522 544 0.95 11 19 0.0068 0.66 11.5 0.2 3 23 560 580 559 580 0.97 12 19 4.8 4.7e+02 2.6 1.1 1 22 586 607 586 608 0.79 13 19 0.00044 0.043 15.3 1.9 4 23 614 633 614 633 0.96 14 19 5.4e-07 5.2e-05 24.5 1.0 1 23 639 661 639 661 0.99 15 19 2.9e-05 0.0028 19.0 1.6 3 23 669 689 667 689 0.96 16 19 6.9e-07 6.7e-05 24.1 2.5 1 23 695 717 695 717 0.98 17 19 9.1e-05 0.0089 17.4 3.7 1 23 723 745 723 745 0.99 18 19 0.0029 0.28 12.7 0.1 1 23 751 773 751 773 0.98 19 19 5.7e-05 0.0056 18.1 0.6 1 23 779 802 779 802 0.97
Sequence Information
- Coding Sequence
- ATGGgagagaatattttaaaaaaaccttgCAGAATATGTTTATTAAGTGAACACCAGCAATTAAGATCAATTTTTCAGCCCCACGAGAACACAGGAccagatttattaatttcccaAATGATAATGTCTTATACTTCACTGACgATAATGCTAGGAGATGGTTTACCTGAAGAAATTTGTCAAAATTGTTCAGAACAAGCAGCCAGattctacttatttaaattaaaatgtgagGAGTCAGATTTAATTTTACGAAAGAAATTGACTCAAACATTATACAGTGCTGAAAGTATTAATGGTGTAGATGATAAGTTATTTGTGGAACCTAAACAGAATGATGCCGATGATGATATTGATTCAGAATATACTTTTGAATGTAAGGAGGAAGATCAACACTTCTTTGGGGACAAAAAGGACAATCACATTGAATGCCACatttgtcataaaaaattaactgaaaCAACAAACTTGACAAGGCATTTAATGATCCATTCTGCTATAAAACCGCATGTTTGTAATCTATGTTCAAAAGGATTTGCAAGGACTGAGCAATTGAACAATCACATGACTGTTCATTTTGGCATTAGGCCACATGTTTGTAAAGTTTGTGGAAAAGggtTCAATAAATCGTTCTATTTAAAGACTCACATGAAAATTCATAATGAAGAGAAACCATATTTGTGCACTGTATGTGGACGAGTATTTAAACAACTTGGGAATTTAAAACAACATACTTTAAGACATAGCGGAGTTAAAAGTAATCTTTGCAGTGTGTGTGGTAAAGGGTTTGCAAGCAAATGGGAATTGTGTGCACATTTGCCAGTACATACAGGTATTCGTCCTTTTGTTTGCTCTACATGTAATAGAGGTTTTACAACTTCAAACTCTCTCAAGAAACATATGCGAATTCATTCAGGGGAAAAGCCGTACGAGTGTGAATTATGTAAGATGAGATTTTTGCACTCTGCAATGTTTACCAGACATAAACGGACACATTCCGGAGAAAAGCCGTACGCTTGTCCTACGTGCCCGAAAGCTTTTGCTCAAAAAAATGATCTAATGGCACATCAACGAATTCATACAGGTGAACGACCGTTTATTTGCGATAAATGTGGTCAGGCATTCAAGAGAAATTATGGATTGAAAAGGCATAAAAAGggtAACAAGGCAATGGAGAAGAATTCTTTAACTGTTTGTAGAACATGTCTGACTGAAAAGGGGcaatttttgtcaattttcACTGAATATAAAGATGAACATATAGATTCCCATTTTGCAGAAATGTTAATGTCTTACACATccttaaaaataAGCAAGGAAGATGATTTGCCAAAGGAGATTTGTGAAAACTGTGCCAATCaagtaacaaatttttatatttttaaaaggaaatgtGAAGAATCTGATCGCTTTCTGCATGCAGATACTAAATCTGTTATTGCAAGCAATAATGCTATAAATGATACTATAAAATTGGAgtataaagaagaaaatgacATAGAGGACATAAAGAAAAATTCGCATTCATTTGAAAACAACAGAGAATTTGAAACTTTgCAGAGGTGGGAATGTAAAGTTTGCAGAATAAGGTTTGTTCGAAGCAGTATGCTGAAAAAACATGAAGCTTCTCATGCTGAAATAGACAACAGTAAAACAAATACTGCTGAAGAAAATAGTTGTTTGATTTGCAACAAACTATTCAATGAAAAAGAACCTTATGAAGCACATATTAAAACTCATTtggaattaaaagaatttgaaTGCCGAATATGCCAAAAACAATTAACTGATCTGACAATATTTAGTCAACATACATCTTTTCATTCTAGTCAAAAAGCACATGTGTGTCATATATGTTTTAATAAGCCATCAAATTTGGAAGACCACATTCGCATTCACAATGGTGAAAAACCATATAAGTGTAATATTTGTGGAAGAGGGTTCAGTCAAATGGGGAACTTAAAACAACACACAAATAGGCACACTGGTATTAAAGATCATTTGTGTAGTATATGTGATAAAGGATTTGCAAGTAAAAAAGAACTGAGCACTCATATACAAAAACATTcagGAATTCGACCATTTGTGTGTTCGACTTGTAACAAGGGTTTTACGACAAATAGTTCATTGAAAAAACACAAACGCATTCATTCCGGAGAAAAGCCATACGAATGCGACGTATGCAAAGCGAAATTTTCACGTTGCAGTGTTTTAACTAGACACAAACGCACTCACACAGGAGAACGGCCGTATGTGTGCGAGTACTGTGCAAAAGCGTTTGCACAACTCAATGATTTGGTTTTCCACTTGCGAATACACACGGGGGAAAAACCATTCGTTTGTGATATATGTGGTCACGCTTTTATACGAAATCCGTCTTTAAGAATGCATAAACAAAAAGTGCACAAAATTAAtacagcataa
- Protein Sequence
- MGENILKKPCRICLLSEHQQLRSIFQPHENTGPDLLISQMIMSYTSLTIMLGDGLPEEICQNCSEQAARFYLFKLKCEESDLILRKKLTQTLYSAESINGVDDKLFVEPKQNDADDDIDSEYTFECKEEDQHFFGDKKDNHIECHICHKKLTETTNLTRHLMIHSAIKPHVCNLCSKGFARTEQLNNHMTVHFGIRPHVCKVCGKGFNKSFYLKTHMKIHNEEKPYLCTVCGRVFKQLGNLKQHTLRHSGVKSNLCSVCGKGFASKWELCAHLPVHTGIRPFVCSTCNRGFTTSNSLKKHMRIHSGEKPYECELCKMRFLHSAMFTRHKRTHSGEKPYACPTCPKAFAQKNDLMAHQRIHTGERPFICDKCGQAFKRNYGLKRHKKGNKAMEKNSLTVCRTCLTEKGQFLSIFTEYKDEHIDSHFAEMLMSYTSLKISKEDDLPKEICENCANQVTNFYIFKRKCEESDRFLHADTKSVIASNNAINDTIKLEYKEENDIEDIKKNSHSFENNREFETLQRWECKVCRIRFVRSSMLKKHEASHAEIDNSKTNTAEENSCLICNKLFNEKEPYEAHIKTHLELKEFECRICQKQLTDLTIFSQHTSFHSSQKAHVCHICFNKPSNLEDHIRIHNGEKPYKCNICGRGFSQMGNLKQHTNRHTGIKDHLCSICDKGFASKKELSTHIQKHSGIRPFVCSTCNKGFTTNSSLKKHKRIHSGEKPYECDVCKAKFSRCSVLTRHKRTHTGERPYVCEYCAKAFAQLNDLVFHLRIHTGEKPFVCDICGHAFIRNPSLRMHKQKVHKINTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -