Amal019837.1
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- ZBTB41
- Assembly
- GCA_029378335.1
- Location
- CM055659.1:24658318-24662797[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 3.1e-06 0.00031 22.0 1.1 1 23 10 33 10 33 0.96 2 23 1.9e-05 0.0019 19.6 0.6 1 23 38 60 38 60 0.98 3 23 0.00035 0.034 15.6 1.8 1 23 73 95 73 95 0.96 4 23 3.4e-05 0.0033 18.8 0.0 1 23 102 124 102 124 0.98 5 23 3.8e-05 0.0037 18.6 0.4 1 23 130 152 130 152 0.99 6 23 2.6e-05 0.0026 19.2 2.3 1 23 162 184 162 184 0.98 7 23 0.00021 0.021 16.3 1.9 1 23 190 213 190 213 0.94 8 23 0.013 1.3 10.7 5.8 1 23 221 243 221 243 0.98 9 23 0.0026 0.25 12.9 1.7 1 23 249 272 249 272 0.91 10 23 1.3e-05 0.0012 20.1 0.7 1 23 277 299 277 299 0.99 11 23 2.1e-06 0.0002 22.6 1.1 1 23 311 333 311 333 0.97 12 23 2.8e-06 0.00027 22.2 0.1 1 23 340 362 340 362 0.98 13 23 0.0056 0.55 11.8 1.3 1 23 368 390 368 390 0.97 14 23 1.2e-06 0.00012 23.3 1.5 1 23 396 418 396 418 0.98 15 23 1.3 1.3e+02 4.4 1.5 2 23 484 505 483 505 0.93 16 23 0.021 2.1 10.0 1.2 1 21 511 531 511 534 0.67 17 23 0.66 65 5.3 0.3 1 23 539 561 539 561 0.89 18 23 0.0008 0.078 14.5 2.2 1 23 567 590 567 590 0.96 19 23 0.00022 0.022 16.2 2.9 1 23 602 625 602 625 0.96 20 23 0.0011 0.1 14.1 0.6 1 23 633 655 633 655 0.96 21 23 0.00023 0.023 16.2 4.1 1 23 661 683 661 683 0.98 22 23 2.4e-05 0.0024 19.2 1.2 1 23 689 711 689 711 0.98 23 23 1.1 1.1e+02 4.6 0.3 1 21 717 737 717 738 0.93
Sequence Information
- Coding Sequence
- ATGAGCCGGCACCAAGTGGACAGTTACCACTATTGTCCCAATTGTGGCAGGGCTTTTATATCGAACAGCAAACTACAAAATCATATCGAGAGAACGCACACTGATGTGCTTTACGAATGCGAGATGTGCGgaaaattgttaaagaacaaGTTCACCCTCATAAAGCACATGAATGTTcaccaaaataaaaacgacGATGACAACGATAAGAAAACTTTTACGTGTCAGTTTTGTGAAAAaacttattatacaaaaacgAGTTTGGTGCGACACGTTGAGGAGCACTTGGGTAAAAAGCAAAGTTACGTTTGTGACATTTGCGGTAAGGCTGTGACATCGACTGAAAGTTTAAGAGATCATCTACTGGTCCACGAGAACAATAAATCGTACGAATGTGTCGATTGTGGAAAGCGATTTAACACAAACAACATTCTATGGGCCCATAAAAGAACACATATGGGAGTTGAGAAgagTAACGCGAGTTATGAATGTAACGTTTGCTATAAAAGCTTTTCTAGTATGCGGTACctaaaaaaacattatctGGTCCACAGTCAGGACAGGCCGTTCAACTGTGACTATTGCGACAAAAACTTCAAGCGGAAATACGACAAAACGATCCACGAAAGGGACGTCCACCTCACCCCCAAGGGGTTCGGACACACGTGCGATCAATGCGGAAAACTGTTCAAGTGCGAGAGCACTTTGAAACTACACCTACGTCGACACGTTTTAGATTACAGTTTCTTCTGTTCCCTGTGCGGGAAAGGTTATTATTCGAAGTACGAGTTAAAATATCACAACGACAGGGACCATAGGGGTCTTTTATTTCAATGCGAGATTTGCGGCAAGTCCCTTAGGAACAAATACATTTTGAACAGTCACATGCTCACCCACGAAACGAACAAGAAGGAAGAGGAGAGCGAAATTTTCATATGCTACTCGTGTGGTAAAAGTTACACGTCAAAGAAGAACTTGGTACGGCACATACGAGGTCACATGAGCAAAAGGACAACTTACGTGTGCGACATTTGCGGAAAAACGGTCATGTCGTCTTCCAGTTTACAGAAGCACCTTCTTATACATAAAAACATACGGCCGTACAAATGTATCGAGTGCGGCAAGTCGTTCAATAAAAGTCTTATTTTGAAGGTGCACAAAAGGACGCATTCCGGTATCAAACCTTTTACATGTGATGAGTGCGGAAAGTGTTTTTCGCAAAGGTCACCGTTGGTTATACACAAACGAATTCATTCGGCCAGTGTTTTTTGTAGGTGTCGTAGAAAATCGTCATCTAGAAATAATAGGAGTTCACAGAAGAACGTTATCGAAACATCTGAtccttcattatttatttatattaaaagagAATCCGACGAAAGTTCAAACGGTAACGGCATCGATTATAACAGCACGCAAAGCGATTTGGACACCAAAGACGAACTCCTCCACTGTTTCAATTGCGAAGCAACATTTAACACTAAACTGTCTTACGCGATGCACAGTATAAGTCATAGCGATGATGGAAAGTACTCCTGCCCAATATGCGACTTTACGACATCGtacaaggataaaattaagtTGCACAAACACACACGTGACAACAAAAAGGATTATGCATGTAAAATATGCCGTCAAACCTTTCTCTACAGCAGAGATGCTGAAGAACACGAGAATATCCATCTGGGGAGGAAGCCGTTCATTTGTGAGGTATGCGGAAAAGAATACGCCTTATCGAAACACCTTGCGTCCCACAGGAGACATCAACATTGGGAAATACTCAAAATAGCTCCCTCTAATAAATTTGACTGCACCACCTGCCAAAAACATTATACCACAGCCTCTGGATTGTGGCGGCATCGACTCAGATACCACAACGTTCAGCAACGAGAACAATTTTTGTGTGACGAGTGCGGTAAGGCACTCACGAGCAAGGAAGGGCTCAAGTTCCATCGGAGAACTCACTCGGGTTATAAACCATTTCATTGTTCCACCTGCCCGAAAAAGTTTGTTAAGAAACAGTTGTTGAAAGAACACGAAAGAACTCACTCTGGTGAACGTCCGTTTATTTGTAAGTACTGTAATAGGGCGTTTACACAGAGAACTCCTTTAAAAATACACGAAAGGTCTCACACAGGTGAGAGACCTTATCAGTGTCGATTTTGTGACGGGAAATATGTATCGAAAAGCGTTGCGGATACTCACATGAGAAACTGTAAAGGAAAGGGttga
- Protein Sequence
- MSRHQVDSYHYCPNCGRAFISNSKLQNHIERTHTDVLYECEMCGKLLKNKFTLIKHMNVHQNKNDDDNDKKTFTCQFCEKTYYTKTSLVRHVEEHLGKKQSYVCDICGKAVTSTESLRDHLLVHENNKSYECVDCGKRFNTNNILWAHKRTHMGVEKSNASYECNVCYKSFSSMRYLKKHYLVHSQDRPFNCDYCDKNFKRKYDKTIHERDVHLTPKGFGHTCDQCGKLFKCESTLKLHLRRHVLDYSFFCSLCGKGYYSKYELKYHNDRDHRGLLFQCEICGKSLRNKYILNSHMLTHETNKKEEESEIFICYSCGKSYTSKKNLVRHIRGHMSKRTTYVCDICGKTVMSSSSLQKHLLIHKNIRPYKCIECGKSFNKSLILKVHKRTHSGIKPFTCDECGKCFSQRSPLVIHKRIHSASVFCRCRRKSSSRNNRSSQKNVIETSDPSLFIYIKRESDESSNGNGIDYNSTQSDLDTKDELLHCFNCEATFNTKLSYAMHSISHSDDGKYSCPICDFTTSYKDKIKLHKHTRDNKKDYACKICRQTFLYSRDAEEHENIHLGRKPFICEVCGKEYALSKHLASHRRHQHWEILKIAPSNKFDCTTCQKHYTTASGLWRHRLRYHNVQQREQFLCDECGKALTSKEGLKFHRRTHSGYKPFHCSTCPKKFVKKQLLKEHERTHSGERPFICKYCNRAFTQRTPLKIHERSHTGERPYQCRFCDGKYVSKSVADTHMRNCKGKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -