Amal019807.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrilus mali
Gene Symbol
Sall1
Assembly
GCA_029378335.1
Location
CM055659.1:24569894-24574111[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.0004 0.039 15.4 3.4 2 23 37 58 36 58 0.97
2 30 0.12 12 7.6 0.9 1 23 79 101 79 101 0.97
3 30 0.00017 0.017 16.6 2.0 1 23 105 127 105 127 0.99
4 30 2 1.9e+02 3.8 1.5 1 23 133 157 133 157 0.94
5 30 0.00082 0.081 14.4 0.6 1 23 163 185 163 185 0.97
6 30 0.00049 0.048 15.1 2.5 1 23 191 214 191 214 0.98
7 30 0.0064 0.63 11.6 1.1 2 23 226 247 225 247 0.97
8 30 0.00023 0.023 16.2 0.4 3 23 264 284 262 284 0.96
9 30 1.7e-05 0.0017 19.7 0.9 1 23 290 312 290 312 0.98
10 30 0.0073 0.71 11.5 2.1 2 23 354 375 353 375 0.96
11 30 0.058 5.7 8.6 0.1 1 23 396 418 396 418 0.98
12 30 0.018 1.8 10.2 0.2 1 23 422 444 422 444 0.97
13 30 0.72 70 5.2 0.7 1 23 450 474 450 474 0.95
14 30 0.00025 0.025 16.0 3.2 1 23 480 502 480 502 0.98
15 30 0.0014 0.13 13.8 1.2 1 23 508 531 508 531 0.96
16 30 0.00078 0.076 14.5 3.8 2 23 543 564 542 564 0.98
17 30 6.6e-05 0.0064 17.9 0.6 3 23 578 598 576 598 0.95
18 30 0.00019 0.019 16.4 1.9 1 23 604 626 604 626 0.98
19 30 4e-05 0.0039 18.6 0.6 1 23 632 654 632 654 0.98
20 30 0.00021 0.02 16.3 0.9 2 23 720 741 719 741 0.97
21 30 0.047 4.6 8.9 3.1 1 23 762 784 762 784 0.97
22 30 0.00016 0.016 16.6 0.5 1 23 788 810 788 810 0.98
23 30 1.2 1.2e+02 4.5 2.9 1 23 816 840 816 840 0.97
24 30 0.00063 0.061 14.8 2.5 1 23 846 868 846 868 0.97
25 30 0.047 4.6 8.9 0.9 1 23 874 897 874 897 0.92
26 30 0.015 1.5 10.5 2.8 2 23 909 930 908 930 0.97
27 30 8.8e-05 0.0086 17.5 1.1 3 23 945 965 943 965 0.96
28 30 6.3e-05 0.0061 18.0 1.2 1 23 971 993 971 993 0.98
29 30 2.1e-06 0.0002 22.6 1.5 1 23 999 1021 999 1021 0.98
30 30 0.00052 0.051 15.1 0.2 1 22 1027 1048 1027 1048 0.95

Sequence Information

Coding Sequence
ATGATCTTTAGGGCTGAAGTCGATATAAAAATTGAGTCGCCCACAATAACGTCGCCTGATGGACAGAACAAATTGAaagggaaaaagaaaaaaaagttggGCACTTGGAAATGCACCAAATGTACAGAAGTGTTTCCTACATGCACCCTCCTCAAGAAGCACCGTAAAGTTCACGTGAAACCGAAATTCGACGACATCCATTACAGTTACAATTTCGACTCTTCTCGAAACATTTACAACTGCGTCACGTGCGATTACGAATGTAATAAAGAAGAAGAGATACAAAAACATGTGATCACACATAAGGAACATTTCACCTGTAAGACGTGCAACAAAAAATTCGACGAACCTTACAAATACGCCACCCATATAAACACCCATACGGGTGacgaaaatttcaaatgtCCTCTTTGCCTGACGTACGAAACCCCAAGAAGAGTTTACCTCCATTCTCATATAAAAACGTTACATTTGCGTCAATACCATTACAGATGCGTCACGTGCGGCAAAGGTTTTAATGACACGGTTCAATTCAAAGAACACAACAATGTTCACGAAGGTTTAAGACCGTTCAAGTGCGTGGTGTGCGGCAAAGATTTCCCCTTTTCAATTTACCTTACGACACATCAACAGAGATGTCACAAAGTTACAATTGACGGGGTCATTGGAACCACACAATGTTCCATTTGCTTACGAAGATACGCAAACGCGCGCACGTACGAGAAACATGTAAAAAAACACGAAAATGATGacaataagaaaaagaagaagccGGAAAAAAGACATTTGTGTGATATTTGCGGTAAAGGATACGCAGTTAAAGAAAAGCTCGTAATACATTATCGTACTCATACTGGTGATAAGCCGTATGTGTGTTCGTATTGCCAAAAAGGCTTTACCAAACGTGATTACTTGATAATGCACGAAAGAGTTCATAGCGGGGAGAAACCGGTGGCGTCGAAGTTAAAAAGTGAGTCTTCCGGTGACGAATCGTGGATACCAAAGAACGAAAAGCTggacaaacaaaaaaagaggAAAAGAAAATCTTCAAGGATTTGGAACTGTACCAAATGCAACGCGAAATTTGATAAGAGCACCCAATTTCGTGACCATCGAAAAGTGCACAAAAAACCAGTGTATGACGACTCACAATACAGCTACACGTACGATCCTGTAAAAGAAACTTACAACTGTGTAACGTGCGACTTGGAAGTCTCTTCGAAAGATGAAATCCAAGAACACGTAAAAAGTCACAAGGAGCACTTTAACTGTGACACTTGTAACTTACAATTCGACGAACCTTACGAATACGCAAAACATACAATAATCCATTCGGACGATGAAACTTACAAATGTCCTATGTGCGAATCGTTTAAGACGAAAGCACGGACTTCGTTGCTTGCCCATATCAACACTTTTCACCTTCACAGATACTTCTACAGATGTACCACATGCGGAAAAGGTTTCAACGACTGCGTCCAGTTCAAAGAACATAAAAACGTCCACGACGGGGTAAAACCTTTCAAATGTGTCGTTTGTGAGAAAGATTTTACCTTCTCGAATTATTTGTTTGCACATCAAGTGCGAAGTCATAAAGTTACGATCGATGGCGTTATCGGAACGAATCAGTGTCATGTGTGTTTACGAAGATTTGCCAACATACGGACTTTACAAAAGCACATGAAGAAACACgaaaacgaaaagaaaaaggaacccgaaaaaaaacatttgtgCGATATTTGCGGAAAAGGATACGCAAGAAAAGCGAAGTTGATTGTTCATTATAGAAATCATACCGGTGATAAACCCTTTAAATGTTCTTATTGTTCGAAAAGGTTTACTCAGAGGGAGTATGTTGTGCTTCATGAAAGGGTTCACAGCGGAGAAAAACCTTATGCTTGTGAATTCTGCGGACGGTGCTTTAATCAAGGTGCACCCCTCAAAGTACACATACGAACCCATACGGGAGAGCGCCCCTTTAGCTGCGAAATTTGCGATGCTCGGAATGTGAAGATCAAGACTGAAGATTCAGAAAACGAAGATTGGAAACCAGATACTACAACCAATTACAGATCATCGAAAACGAATTGCAAatcaaaaagtattaaaaactGGTCGTCAATAAAGAAGAAGCAAACCAGAATGAGAAGAATATGGAAATGCACCAAGTGTCCCGAAGAGTTCGATACAAATCGAAAATTACGTGTTCACAGAAAAATAcaccaaaaaaacaaatacgaaGAGACTAAATACAGCTACATTTTTGATGCTGCAAAGGACATTTACTGCTGCATGACTTGTGACGTAGAATGCAGTACTAAAGAAGAAATTCAAAGGCACGTGTTGACCCACGAAGAACATTACACGTGTGAAATATGCAACTTAACCTTTTCCGAACCCTACAAGTACGCAACACACATGTTTGTCCACAGTAAAGATCATTTCTTTAAGTGTCCCCTCTGTGACTCTTACAAAACCCCAAAAAGAACCTGTTTATTGTCACACATCAACACTTTTCACTTAAAAAGATTCATTTATACATGTTCTACTTGCGGCAAAGGTTTCAACGATTGCGTCCAGTTCAAAGAACACAACAACATTCATAAAGGAATTCGACCCTTTGAGTGTATAGTTTGTGGTAAAGATTTCCCATTCTCGGTCTACCTTCACACCCATCAGGTCCGAAACCATAGGGTCTCAATCGATGGCGTTATCGGTACAAATCAGTGTTACGTGTGCATGCGCAGCTGTGCCAATCCTCAAACCCTCAAAAGACACATAAAGAAACACGCGAAAGAGGGCGAAAAGGGCGGTCGCGAAAAGAAGCACTTGTGCGACATGTGCGGGAAGGGTTTTGCGGTCAAATACAAGTTGATATTGCATTATCGCACCCATACAGGGGTGAAACCTTATAGTTGTTCGTACTGTGCGAAAAGCTTCACTAAACGTGACTATTTGGTAATGCACGAGCGGATTCACAGCGGGGAAAAACCGTACTCTTGCGAATATTGCGGGAAATGTTTTAATCAAACCGCCCCTCTCAGAGTGCACATACGTAGTCATACGGGGGAGCGCCCCTTCGTTTGCCACATATGTAACAGCGGGTTTATTTCGAAGGGGTCTCTTAATATACACATCAAACGGTGCACCGGAAATGACTATGCGGTTTAA
Protein Sequence
MIFRAEVDIKIESPTITSPDGQNKLKGKKKKKLGTWKCTKCTEVFPTCTLLKKHRKVHVKPKFDDIHYSYNFDSSRNIYNCVTCDYECNKEEEIQKHVITHKEHFTCKTCNKKFDEPYKYATHINTHTGDENFKCPLCLTYETPRRVYLHSHIKTLHLRQYHYRCVTCGKGFNDTVQFKEHNNVHEGLRPFKCVVCGKDFPFSIYLTTHQQRCHKVTIDGVIGTTQCSICLRRYANARTYEKHVKKHENDDNKKKKKPEKRHLCDICGKGYAVKEKLVIHYRTHTGDKPYVCSYCQKGFTKRDYLIMHERVHSGEKPVASKLKSESSGDESWIPKNEKLDKQKKRKRKSSRIWNCTKCNAKFDKSTQFRDHRKVHKKPVYDDSQYSYTYDPVKETYNCVTCDLEVSSKDEIQEHVKSHKEHFNCDTCNLQFDEPYEYAKHTIIHSDDETYKCPMCESFKTKARTSLLAHINTFHLHRYFYRCTTCGKGFNDCVQFKEHKNVHDGVKPFKCVVCEKDFTFSNYLFAHQVRSHKVTIDGVIGTNQCHVCLRRFANIRTLQKHMKKHENEKKKEPEKKHLCDICGKGYARKAKLIVHYRNHTGDKPFKCSYCSKRFTQREYVVLHERVHSGEKPYACEFCGRCFNQGAPLKVHIRTHTGERPFSCEICDARNVKIKTEDSENEDWKPDTTTNYRSSKTNCKSKSIKNWSSIKKKQTRMRRIWKCTKCPEEFDTNRKLRVHRKIHQKNKYEETKYSYIFDAAKDIYCCMTCDVECSTKEEIQRHVLTHEEHYTCEICNLTFSEPYKYATHMFVHSKDHFFKCPLCDSYKTPKRTCLLSHINTFHLKRFIYTCSTCGKGFNDCVQFKEHNNIHKGIRPFECIVCGKDFPFSVYLHTHQVRNHRVSIDGVIGTNQCYVCMRSCANPQTLKRHIKKHAKEGEKGGREKKHLCDMCGKGFAVKYKLILHYRTHTGVKPYSCSYCAKSFTKRDYLVMHERIHSGEKPYSCEYCGKCFNQTAPLRVHIRSHTGERPFVCHICNSGFISKGSLNIHIKRCTGNDYAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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