Amal010810.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrilus mali
Gene Symbol
ECU06_1150
Assembly
GCA_029378335.1
Location
CM055656.1:24775128-24786634[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 0.02 1.9 10.1 3.8 1 23 93 115 93 115 0.98
2 27 5.4e-07 5.3e-05 24.5 0.6 1 22 121 142 121 142 0.96
3 27 0.0012 0.12 13.9 0.4 1 23 153 175 153 175 0.98
4 27 0.00051 0.05 15.1 5.6 1 23 181 203 181 203 0.98
5 27 1.8e-06 0.00017 22.8 3.8 1 23 209 231 209 231 0.99
6 27 0.00027 0.027 15.9 0.4 1 23 237 259 237 259 0.95
7 27 0.00018 0.018 16.5 1.1 1 23 265 287 265 287 0.98
8 27 1e-05 0.00098 20.5 2.7 1 23 293 315 293 315 0.98
9 27 0.86 85 4.9 0.6 1 15 321 335 321 336 0.87
10 27 0.39 38 6.0 5.9 1 23 480 502 480 502 0.97
11 27 9.8e-08 9.6e-06 26.8 1.5 1 23 508 530 508 530 0.99
12 27 0.00081 0.079 14.5 0.5 1 23 540 562 540 562 0.99
13 27 1.1e-05 0.001 20.4 2.2 1 23 567 589 567 589 0.99
14 27 1.6e-05 0.0016 19.8 0.8 1 23 595 617 595 617 0.98
15 27 3.9e-06 0.00038 21.7 2.2 1 23 623 645 623 645 0.99
16 27 0.068 6.6 8.4 1.0 1 11 651 661 651 663 0.91
17 27 6.6e-07 6.5e-05 24.2 0.7 2 23 703 724 702 724 0.96
18 27 5.4e-07 5.3e-05 24.4 2.0 1 23 730 752 730 752 0.98
19 27 0.0012 0.12 13.9 0.4 1 23 762 784 762 784 0.98
20 27 0.00051 0.05 15.1 5.6 1 23 790 812 790 812 0.98
21 27 1.8e-06 0.00017 22.8 3.8 1 23 818 840 818 840 0.99
22 27 0.00027 0.027 15.9 0.4 1 23 846 868 846 868 0.95
23 27 0.00018 0.018 16.5 1.1 1 23 874 896 874 896 0.98
24 27 5.8e-06 0.00057 21.2 3.2 1 23 902 924 902 924 0.98
25 27 4.4e-05 0.0043 18.4 3.9 1 23 930 952 930 952 0.98
26 27 6.5e-06 0.00064 21.1 2.4 1 20 958 977 958 979 0.94
27 27 2.2e-07 2.1e-05 25.7 1.5 1 23 986 1008 986 1008 0.99

Sequence Information

Coding Sequence
ATGAAAGGCATCGAGTTTATTGACAAAACATGCTGTTTATCAGATAAGGAAGATGAGGTTTTACATTTAGATATTAAAGAAGAAGTTATTATAAAAGATGAAGTAGATGATTACAACATTTATGATGACAGTGAAACATGGGATTATCCTGATAAGGAAGATAATGTGAAATATGaacatttaaattcaaattatagtAAAGATGAaactattacaaaaaagaaaatggaagTTTCTCCTGAAATTGCTAACAACAAACAAGAAGAAGAGAAACGGTTTAAGTGCGAAACGTGCGGCAGACATTTGATCTCAAAATCTAAGCTGGTCTGTCACATTCGGATTCATACTGGGGAGAAACCGTATGAGTGCCATGAGTGTCCAAAAAGCTTTGCAAAGAAAGAAGATTTAAAACGACATTTACGCGTTCCTAATATAGATGATACAGATGAAAATCCATTCAAGTGTGAGTCCTGCGACGAACGTTTTGACTTAAAGTGGAAGTTAGCCACTCATGTTCGCATCCATACTAGAGAAAAACCATTCAAATGTGAAACCTGTGATAAATGTTTCATATCAAAATCAAAGTTGGTCTGTCACATTCGCATTCATACAGGGGAAAAACCGTACAAATGTCAAGTATGTCACACAAGCTTTgccaataaacaaaatttcaatcgACATATTCGCATTCACAAAGGAGAAAGGCCATTCGAGTGTGAAACCTGCGGACAACGATTTACTGAAAAaGCCAGTTTGATGTATCATCAGGTTTTGCATACAGGACAACGTCCCTTTGAATGTGAAATTTGCAAGAAACGTTTTGCTTCAAAACCGAAACTAACTTTTCACATTCGTATGCATACCGAAGAAAAACGGCATGAATGTGAAGTGTGTCAGAAAAGGTATTCCGATAAACGAGATTTCGTACGACACATACGCACACACACAGGAGAAAAACCTTTCAAGTGTGACACATGTGAACGGAGTTATAATCACATTTATAATATGCCACTACAAACAGAAACAAACTCAACAATGAAGAATGAATCGTTACACGATAATTCCAATACGTTGTGTTTTTCAAATGGAGAAGATAATagatgtaataatttaaacgtAGAAAAAGTAAACATTAAGGAAAGAGATACAGAATGTAATATTATGAAAGTCATCGAGTTTATTGACAAAACATGCTGTTTATCTGATAAGGAAGATGAGGttttatatttagatattaaagaagaagtcattataaaagaagaaGTAGATGATGACAACATTGTTGATGACAGTGAAACAAGGCATTATCCTGATAAGGAAGATAATGTGAAATATGaacatttaaattcaaattatactAAAGATGAAACTATTACAAAAAAGGAAATGGAAGTTTCTCCTGAAACTGCTACCAACAAACAAGAAGAAGAGAAACGGTTTAAGTGCGAAACGTGTGGCAGACATTTGATCTCAAAATCTAAGCTGGTCTGTCACATTTGCATTCATACTGGGGAGAAACCGTATGAGTGCCATGTGTGTCCAAAAAGCTTTGCAAAAAAAGAAGATTTAAAACGACATTTACGCGTTCATAATATAGATAATACAGAtgaaaatcaattcaagtgtGAATTCTGCGACGAACGTTTTGACTTAAAGTGGAAGTTAGTCTCTCATGTTCGCATACATGGAGAAAAACCATTCAAATGTGAAACCTGTGATAAacgtttcaaattaaaatcaaaattggtCTATCACATTCGCATacatacaggggaaagtcCATTCAAATGTGATATTTGTGGAAAGAGCTTCACAGAAAATGCTAGTTTGGCCTGTCACATCCGCATCCATACTGGAGAAAAACCATACGAATGTAAAGTGtgtcaaaaaaagttttcagcTAGACAAAACTTAACTCGACATAGGCGCATTCATTCCGGAGAAAAGCCATTCAAATGTGAAATTTGTGGAAGGAGATTTACTGAAAAGTTAGTAACGATAAATGCCACTAATAATAtccaaattattaatttaaaaagaattcgaTTAGTTTTGTGTGCTAGTTTAGTGCACCATCAGATTTTACATACGGGCGAACGTCCTCTTGAGTGTCAAATTTGCGGCAAACGTTTTGTCACAAAGTCGAAGCTTAACGTTCACATTCGCTTTCATACTGGGGAGAAACTGTATGAGTGCCATGTGTGTCCAAAAAGCTTTgcatataaacaaaatttaaaacgacATTTAAGCGTTCATAATATAGATGATACAGATGAAAATCCATTCAAGTGTGAGTCCTGCGACGAACGTTTTGACTTAAAGTGGAAGTTAGCCACTCATGTTCGCATCCATACTAGAGAAAAACCATTCAAATGTGAAACCTGTGATAAATGTTTCATATCAAAATCAAAGTTGGTCTGTCACATTCGCATTCATACAGGGGAAAAACCGTACAAATGTCAAGTATGTCACACAAGCTTTgccaataaacaaaatttcaatcgACATATTCGCATTCACAAAGGAGAAAGGCCATTCGAGTGTGAAACCTGCGGACAACGATTTACTGAAAAaGCCAGTTTGATGTATCATCAGGTTTTGCATACAGGACAACGTCCCTTTGAATGTGAAATTTGCAAGAAACGTTTTGCTTCAAAACCGAAACTAACTTTTCACATTCGTATGCATACCGAAGAAAAACGGCATGAATGTGAAGTGTGTCAGAAAAGGTATTCCGATAAACGAGATTTCGTACGACACATGCGCACACACACAGGAGAAAAACCTTTCAAGTGTGAAACATGTGAACGAAAATATAATCACAAATCCGATTTGGTGCGTCATCAAATGTCACATACGGGTGAACGTCCGTTTGAATGTCCGAAATGCGGAAAACGTTTCATCAGGAAATCGAAATTGACTAAACATAGTTGTGTCAAAACCGGGAATAAACCGTTCAAGTGTGATATGTGCCAGAAAAGTTTTTCCCAAAAACGGACCCTCGCTGTGCATATGCGCATTCACACGAAAGAATATGCGAAACCTACGGAATGA
Protein Sequence
MKGIEFIDKTCCLSDKEDEVLHLDIKEEVIIKDEVDDYNIYDDSETWDYPDKEDNVKYEHLNSNYSKDETITKKKMEVSPEIANNKQEEEKRFKCETCGRHLISKSKLVCHIRIHTGEKPYECHECPKSFAKKEDLKRHLRVPNIDDTDENPFKCESCDERFDLKWKLATHVRIHTREKPFKCETCDKCFISKSKLVCHIRIHTGEKPYKCQVCHTSFANKQNFNRHIRIHKGERPFECETCGQRFTEKASLMYHQVLHTGQRPFECEICKKRFASKPKLTFHIRMHTEEKRHECEVCQKRYSDKRDFVRHIRTHTGEKPFKCDTCERSYNHIYNMPLQTETNSTMKNESLHDNSNTLCFSNGEDNRCNNLNVEKVNIKERDTECNIMKVIEFIDKTCCLSDKEDEVLYLDIKEEVIIKEEVDDDNIVDDSETRHYPDKEDNVKYEHLNSNYTKDETITKKEMEVSPETATNKQEEEKRFKCETCGRHLISKSKLVCHICIHTGEKPYECHVCPKSFAKKEDLKRHLRVHNIDNTDENQFKCEFCDERFDLKWKLVSHVRIHGEKPFKCETCDKRFKLKSKLVYHIRIHTGESPFKCDICGKSFTENASLACHIRIHTGEKPYECKVCQKKFSARQNLTRHRRIHSGEKPFKCEICGRRFTEKLVTINATNNIQIINLKRIRLVLCASLVHHQILHTGERPLECQICGKRFVTKSKLNVHIRFHTGEKLYECHVCPKSFAYKQNLKRHLSVHNIDDTDENPFKCESCDERFDLKWKLATHVRIHTREKPFKCETCDKCFISKSKLVCHIRIHTGEKPYKCQVCHTSFANKQNFNRHIRIHKGERPFECETCGQRFTEKASLMYHQVLHTGQRPFECEICKKRFASKPKLTFHIRMHTEEKRHECEVCQKRYSDKRDFVRHMRTHTGEKPFKCETCERKYNHKSDLVRHQMSHTGERPFECPKCGKRFIRKSKLTKHSCVKTGNKPFKCDMCQKSFSQKRTLAVHMRIHTKEYAKPTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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